MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 73781 bp
Accession: NC_021015 Location: 1309616..1383396 Organism: Ruminococcus torques L2-14 Replicon: draft genome
Accession: NC_021015 Location: 1309616..1383396 Organism: Ruminococcus torques L2-14 Replicon: draft genome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RTO_RS06045 (RTO_12640) | 1305002..1305325 | - | 324 | WP_015528500.1 | MobC family plasmid mobilization relaxosome protein | - |
| RTO_RS06050 | 1305573..1305962 | + | 390 | WP_055039885.1 | MmcQ/YjbR family DNA-binding protein | - |
| RTO_RS06055 | 1305997..1306986 | + | 990 | Protein_1202 | helicase | - |
| RTO_RS06060 (RTO_12680) | 1306988..1307794 | + | 807 | WP_015528502.1 | DUF3849 domain-containing protein | - |
| RTO_RS06065 (RTO_12690) | 1307791..1308135 | + | 345 | WP_015528503.1 | plasmid mobilization relaxosome protein MobC | - |
| RTO_RS06070 (RTO_12700) | 1308291..1308602 | + | 312 | WP_015528504.1 | CD1845 family protein | - |
| RTO_RS06075 (RTO_12710) | 1308698..1309306 | + | 609 | WP_015528505.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| RTO_RS06080 (RTO_12720) | 1309303..1310157 | + | 855 | WP_015528506.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| RTO_RS06085 (RTO_12730) | 1310154..1310462 | + | 309 | WP_015528507.1 | hypothetical protein | - |
| RTO_RS06090 | 1310517..1310648 | + | 132 | Protein_1209 | relaxase | - |
| RTO_RS06095 (RTO_12750) | 1311153..1312104 | + | 952 | WP_208913281.1 | relaxase | - |
| RTO_RS06100 (RTO_12760) | 1312328..1312684 | - | 357 | WP_015528509.1 | helix-turn-helix transcriptional regulator | - |
| RTO_RS06105 (RTO_12770) | 1312823..1312996 | - | 174 | Protein_1212 | helix-turn-helix transcriptional regulator | - |
| RTO_RS06110 | 1313324..1313608 | + | 285 | WP_117539819.1 | autorepressor SdpR family transcription factor | - |
| RTO_RS06115 (RTO_12790) | 1313592..1314188 | + | 597 | WP_015528511.1 | SdpI family protein | - |
| RTO_RS06120 (RTO_12800) | 1314203..1314511 | + | 309 | WP_015528512.1 | DUF1648 domain-containing protein | - |
| RTO_RS06125 (RTO_12810) | 1314598..1315333 | + | 736 | Protein_1216 | ABC transporter ATP-binding protein | - |
| RTO_RS06130 (RTO_12820) | 1315296..1316915 | + | 1620 | WP_208913282.1 | hypothetical protein | - |
| RTO_RS06135 | 1316951..1317136 | + | 186 | WP_117539823.1 | cysteine-rich KTR domain-containing protein | - |
| RTO_RS06140 (RTO_12830) | 1317655..1318068 | + | 414 | WP_015528515.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| RTO_RS06145 (RTO_12840) | 1318190..1318366 | + | 177 | WP_015528516.1 | helix-turn-helix domain-containing protein | - |
| RTO_RS06150 (RTO_12850) | 1318428..1319114 | + | 687 | WP_015528517.1 | response regulator transcription factor | - |
| RTO_RS06155 (RTO_12860) | 1319111..1320142 | + | 1032 | WP_015528518.1 | HAMP domain-containing sensor histidine kinase | - |
| RTO_RS06160 (RTO_12870) | 1320287..1320952 | + | 666 | WP_015528519.1 | ABC transporter ATP-binding protein | - |
| RTO_RS06165 (RTO_12880) | 1320966..1323614 | + | 2649 | WP_015528520.1 | ABC transporter permease | - |
| RTO_RS06170 (RTO_12890) | 1323826..1324491 | + | 666 | WP_015528521.1 | ABC transporter ATP-binding protein | - |
| RTO_RS06175 (RTO_12900) | 1324504..1327137 | + | 2634 | WP_015528522.1 | FtsX-like permease family protein | - |
| RTO_RS06180 (RTO_12910) | 1327775..1328188 | + | 414 | WP_002594724.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| RTO_RS06185 (RTO_12930) | 1328687..1329037 | + | 351 | WP_015528524.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| RTO_RS06190 (RTO_12940) | 1329117..1329278 | + | 162 | WP_004797315.1 | hypothetical protein | - |
| RTO_RS06195 (RTO_12950) | 1329334..1331280 | + | 1947 | WP_015528525.1 | recombinase family protein | - |
| RTO_RS06200 (RTO_12960) | 1331312..1331683 | + | 372 | WP_015528526.1 | TnpV protein | - |
| RTO_RS06205 (RTO_12970) | 1331761..1333470 | - | 1710 | WP_015528527.1 | MobQ family relaxase | - |
| RTO_RS06210 (RTO_12980) | 1333608..1333829 | - | 222 | WP_014080783.1 | DUF3847 domain-containing protein | - |
| RTO_RS06215 (RTO_12990) | 1334000..1334857 | - | 858 | WP_015528528.1 | ATP-binding protein | - |
| RTO_RS06220 (RTO_13000) | 1334854..1335570 | - | 717 | WP_015528529.1 | replication initiator protein A | - |
| RTO_RS06225 (RTO_13010) | 1335815..1337113 | - | 1299 | WP_015528530.1 | IS4 family transposase | - |
| RTO_RS06230 (RTO_13020) | 1337194..1337541 | - | 348 | WP_015528531.1 | hypothetical protein | - |
| RTO_RS06235 (RTO_13030) | 1337779..1338669 | + | 891 | WP_021650489.1 | LysR family transcriptional regulator | - |
| RTO_RS06240 (RTO_13040) | 1338828..1339520 | + | 693 | WP_015528533.1 | DUF4405 domain-containing protein | - |
| RTO_RS06245 (RTO_13050) | 1339538..1340461 | + | 924 | WP_015528534.1 | prolyl oligopeptidase family serine peptidase | - |
| RTO_RS06250 (RTO_13060) | 1340579..1341466 | + | 888 | WP_015528535.1 | aldo/keto reductase | - |
| RTO_RS06255 (RTO_13070) | 1341485..1342117 | + | 633 | WP_006427000.1 | flavodoxin family protein | - |
| RTO_RS06260 (RTO_13080) | 1342163..1342849 | + | 687 | WP_015528536.1 | flavodoxin | - |
| RTO_RS06265 (RTO_13090) | 1342958..1343959 | + | 1002 | WP_015528537.1 | aldo/keto reductase | - |
| RTO_RS06270 (RTO_13110) | 1344088..1344591 | + | 504 | WP_015528539.1 | flavodoxin | - |
| RTO_RS06275 (RTO_13120) | 1344717..1345271 | + | 555 | WP_015528540.1 | flavin reductase | - |
| RTO_RS06280 | 1345287..1346054 | + | 768 | WP_072521411.1 | carboxymuconolactone decarboxylase family protein | - |
| RTO_RS06285 (RTO_13140) | 1346117..1348369 | - | 2253 | WP_015528541.1 | tetratricopeptide repeat protein | - |
| RTO_RS15805 (RTO_13150) | 1348619..1348753 | + | 135 | WP_004844681.1 | hypothetical protein | - |
| RTO_RS06290 (RTO_13160) | 1348793..1349281 | - | 489 | WP_015528542.1 | hypothetical protein | Toxin Detail |
| - | 1349334..1349379 | - | 46 | - | - | Antitoxin Detail |
| RTO_RS06295 (RTO_13170) | 1349570..1351255 | + | 1686 | WP_015528543.1 | recombinase family protein | - |
| RTO_RS06300 (RTO_13180) | 1351566..1352327 | + | 762 | WP_015528544.1 | helix-turn-helix transcriptional regulator | - |
| RTO_RS06305 (RTO_13200) | 1352763..1353110 | + | 348 | Protein_1253 | YjdF family protein | - |
| RTO_RS06310 (RTO_13210) | 1353188..1353568 | + | 381 | WP_015528547.1 | DUF4825 domain-containing protein | - |
| RTO_RS06315 (RTO_13220) | 1353890..1354429 | + | 540 | WP_015528548.1 | sigma-70 family RNA polymerase sigma factor | - |
| RTO_RS15560 (RTO_13230) | 1354416..1354655 | + | 240 | WP_015528549.1 | hypothetical protein | - |
| RTO_RS15565 (RTO_13240) | 1354694..1355194 | + | 501 | WP_015528550.1 | hypothetical protein | - |
| RTO_RS06325 (RTO_13250) | 1355178..1356062 | + | 885 | WP_005338319.1 | ABC transporter ATP-binding protein | - |
| RTO_RS06330 (RTO_13260) | 1356055..1357245 | + | 1191 | WP_015528551.1 | ABC transporter permease | - |
| RTO_RS06335 (RTO_13270) | 1357531..1357896 | + | 366 | WP_055171822.1 | helix-turn-helix domain-containing protein | - |
| RTO_RS06340 (RTO_13280) | 1357983..1358975 | + | 993 | WP_015528553.1 | ORF6N domain-containing protein | - |
| RTO_RS06345 (RTO_13290) | 1359484..1359669 | - | 186 | WP_015528554.1 | hypothetical protein | - |
| RTO_RS06350 | 1359839..1362805 | + | 2967 | WP_208913283.1 | DEAD/DEAH box helicase family protein | - |
| RTO_RS06355 (RTO_13320) | 1362846..1364055 | + | 1210 | Protein_1264 | recombinase family protein | - |
| RTO_RS06360 (RTO_13330) | 1364472..1364747 | + | 276 | WP_015528556.1 | hypothetical protein | - |
| RTO_RS06365 | 1364759..1365211 | + | 453 | WP_243441196.1 | DUF1016 N-terminal domain-containing protein | - |
| RTO_RS06370 (RTO_13350) | 1365252..1370024 | + | 4773 | WP_015528557.1 | SMEK domain-containing protein | - |
| RTO_RS06375 (RTO_13370) | 1370331..1371020 | + | 690 | WP_008120506.1 | response regulator transcription factor | - |
| RTO_RS06380 | 1370996..1372261 | + | 1266 | WP_208913284.1 | HAMP domain-containing sensor histidine kinase | - |
| RTO_RS06385 (RTO_13390) | 1372439..1373113 | + | 675 | WP_015520995.1 | ABC transporter ATP-binding protein | - |
| RTO_RS06390 (RTO_13400) | 1373110..1375554 | + | 2445 | WP_015528558.1 | ABC transporter permease | - |
| RTO_RS06395 (RTO_13410) | 1375766..1376803 | + | 1038 | WP_015528559.1 | helix-turn-helix transcriptional regulator | - |
| RTO_RS06400 (RTO_13420) | 1376946..1377182 | + | 237 | WP_243279953.1 | 23S rRNA methyltransferase | - |
| RTO_RS06405 (RTO_13430) | 1377604..1377882 | + | 279 | WP_015528561.1 | helix-turn-helix domain-containing protein | - |
| RTO_RS06410 (RTO_13440) | 1377963..1379003 | + | 1041 | WP_015528562.1 | ORF6N domain-containing protein | - |
| RTO_RS06415 | 1379024..1379191 | + | 168 | WP_117861743.1 | helix-turn-helix transcriptional regulator | - |
| RTO_RS06420 (RTO_13450) | 1379289..1380611 | + | 1323 | WP_015528563.1 | MATE family efflux transporter | - |
| RTO_RS06425 (RTO_13460) | 1380620..1381471 | + | 852 | WP_015528564.1 | AraC family transcriptional regulator | - |
| RTO_RS06430 (RTO_13470) | 1381909..1382346 | + | 438 | WP_015528565.1 | hypothetical protein | - |
| RTO_RS06435 | 1382407..1382655 | + | 249 | WP_208913285.1 | hypothetical protein | - |
| RTO_RS06440 (RTO_13500) | 1382729..1383652 | + | 924 | WP_015528567.1 | helix-turn-helix transcriptional regulator | - |
| RTO_RS06445 | 1383928..1384524 | + | 597 | Protein_1282 | EamA family transporter | - |
| RTO_RS06450 | 1385022..1385775 | + | 754 | WP_208913286.1 | LytTR family DNA-binding domain-containing protein | - |
| RTO_RS06455 (RTO_13550) | 1385950..1386144 | + | 195 | WP_015528570.1 | hypothetical protein | - |
| RTO_RS06460 (RTO_13560) | 1386427..1387284 | + | 858 | WP_015528571.1 | RNA methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|