MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 106207 bp
Accession: NC_021015 Location: 1131582..1237788 Organism: Ruminococcus torques L2-14 Replicon: draft genome
Accession: NC_021015 Location: 1131582..1237788 Organism: Ruminococcus torques L2-14 Replicon: draft genome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RTO_RS05335 (RTO_11180) | 1128022..1128381 | + | 360 | WP_005937450.1 | PadR family transcriptional regulator | - |
| RTO_RS05340 (RTO_11190) | 1128378..1128836 | + | 459 | WP_005937453.1 | DUF1700 domain-containing protein | - |
| RTO_RS05345 (RTO_11200) | 1128839..1129276 | + | 438 | WP_015528419.1 | hypothetical protein | - |
| RTO_RS05350 (RTO_11210) | 1129288..1129470 | + | 183 | Protein_1063 | cysteine-rich KTR domain-containing protein | - |
| RTO_RS05355 | 1129588..1129920 | - | 333 | WP_147324207.1 | hypothetical protein | - |
| RTO_RS05360 (RTO_11220) | 1130313..1130660 | + | 348 | WP_015528421.1 | plasmid mobilization relaxosome protein MobC | - |
| RTO_RS05365 (RTO_11240) | 1130632..1132266 | + | 1635 | WP_208913263.1 | relaxase/mobilization nuclease domain-containing protein | - |
| RTO_RS05370 | 1132453..1132644 | + | 192 | WP_208913264.1 | hypothetical protein | - |
| RTO_RS05375 (RTO_11250) | 1132634..1133386 | + | 753 | WP_015528424.1 | phage replisome organizer N-terminal domain-containing protein | - |
| RTO_RS05380 (RTO_11260) | 1133383..1134210 | + | 828 | WP_015528425.1 | ATP-binding protein | - |
| RTO_RS05385 (RTO_11270) | 1134223..1134420 | + | 198 | WP_005939431.1 | transposon-encoded TnpW family protein | - |
| RTO_RS05390 (RTO_11280) | 1134479..1134973 | - | 495 | WP_173813709.1 | AAA family ATPase | - |
| RTO_RS05395 (RTO_11290) | 1135185..1136798 | + | 1614 | WP_015528426.1 | recombinase family protein | - |
| RTO_RS05400 | 1138232..1140181 | + | 1950 | WP_208913441.1 | ATP-binding protein | - |
| RTO_RS05405 | 1141476..1143447 | + | 1972 | WP_208913265.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| RTO_RS05410 (RTO_11320) | 1143490..1143792 | + | 303 | WP_008688068.1 | DUF4315 family protein | - |
| RTO_RS05415 | 1143749..1144910 | + | 1162 | WP_208913266.1 | DUF4366 domain-containing protein | - |
| RTO_RS05420 | 1145636..1147499 | + | 1864 | WP_208913267.1 | DNA topoisomerase | - |
| RTO_RS05425 | 1147568..1148059 | + | 492 | WP_208913268.1 | hypothetical protein | - |
| RTO_RS05430 | 1148566..1153206 | + | 4641 | WP_208913269.1 | SpaA isopeptide-forming pilin-related protein | - |
| RTO_RS05435 | 1153949..1154604 | + | 656 | WP_208913270.1 | SpaA isopeptide-forming pilin-related protein | - |
| RTO_RS05440 (RTO_11380) | 1154687..1154827 | + | 141 | WP_005344203.1 | hypothetical protein | - |
| RTO_RS05445 (RTO_11390) | 1154834..1155922 | + | 1089 | WP_015528427.1 | DUF5688 family protein | - |
| RTO_RS05450 | 1155991..1156825 | + | 835 | Protein_1083 | adenine methyltransferase | - |
| RTO_RS05455 | 1158395..1159852 | + | 1458 | WP_208913271.1 | class I SAM-dependent methyltransferase | - |
| RTO_RS05460 (RTO_11420) | 1160915..1163207 | + | 2293 | Protein_1085 | adenine methyltransferase | - |
| RTO_RS05465 (RTO_11430) | 1163288..1166047 | + | 2760 | WP_015528429.1 | YodL domain-containing protein | - |
| RTO_RS05470 | 1166075..1166281 | + | 207 | WP_055059678.1 | hypothetical protein | - |
| RTO_RS05475 | 1166565..1166804 | + | 240 | WP_054337273.1 | helix-turn-helix transcriptional regulator | - |
| RTO_RS05480 (RTO_11460) | 1166892..1167629 | + | 738 | WP_015528430.1 | LytTR family DNA-binding domain-containing protein | - |
| RTO_RS05485 (RTO_11470) | 1167626..1168921 | + | 1296 | WP_015528431.1 | sensor histidine kinase | - |
| RTO_RS05490 (RTO_11480) | 1169023..1169181 | + | 159 | WP_015528432.1 | cyclic lactone autoinducer peptide | - |
| RTO_RS05495 | 1169181..1169780 | + | 600 | WP_054337272.1 | accessory gene regulator B family protein | - |
| RTO_RS05500 | 1169870..1170589 | + | 720 | WP_179961046.1 | alpha/beta fold hydrolase | - |
| RTO_RS05505 (RTO_11520) | 1170600..1171286 | + | 687 | WP_015528434.1 | 4'-phosphopantetheinyl transferase superfamily protein | - |
| RTO_RS05510 (RTO_11530) | 1171288..1172877 | + | 1590 | WP_015528435.1 | AMP-binding protein | - |
| RTO_RS05515 (RTO_11540) | 1172892..1180565 | + | 7674 | WP_015528436.1 | non-ribosomal peptide synthetase | - |
| RTO_RS05520 (RTO_11550) | 1180565..1181998 | + | 1434 | WP_015528437.1 | condensation domain-containing protein | - |
| RTO_RS05525 (RTO_11560) | 1182012..1183004 | + | 993 | WP_015528438.1 | alpha/beta hydrolase | - |
| RTO_RS05530 (RTO_11570) | 1183024..1184763 | + | 1740 | WP_015528439.1 | amino acid adenylation domain-containing protein | - |
| RTO_RS05535 (RTO_11580) | 1184767..1188573 | + | 3807 | WP_015528440.1 | amino acid adenylation domain-containing protein | - |
| RTO_RS05540 (RTO_11590) | 1188563..1189588 | + | 1026 | WP_015528441.1 | Saccharopine dehydrogenase and related proteins | - |
| RTO_RS05545 (RTO_11600) | 1189585..1190685 | + | 1101 | WP_015528442.1 | Gfo/Idh/MocA family oxidoreductase | - |
| RTO_RS05550 | 1190678..1191412 | + | 735 | WP_055222064.1 | class I SAM-dependent methyltransferase | - |
| RTO_RS05555 (RTO_11620) | 1191711..1192676 | + | 966 | WP_015528443.1 | AraC family transcriptional regulator | - |
| RTO_RS05560 (RTO_11630) | 1192807..1193403 | + | 597 | WP_008395315.1 | MptD family putative ECF transporter S component | - |
| RTO_RS05565 (RTO_11640) | 1193403..1194155 | + | 753 | WP_015528444.1 | energy-coupling factor transporter transmembrane component T | - |
| RTO_RS05570 (RTO_11650) | 1194152..1195618 | + | 1467 | WP_015528445.1 | energy-coupling factor ABC transporter ATP-binding protein | - |
| RTO_RS05575 (RTO_11660) | 1195745..1197529 | + | 1785 | WP_015528446.1 | ABC transporter ATP-binding protein | - |
| RTO_RS05580 (RTO_11670) | 1197530..1199278 | + | 1749 | WP_015528447.1 | ABC transporter ATP-binding protein | - |
| RTO_RS05585 (RTO_11680) | 1199290..1199658 | + | 369 | WP_015528448.1 | metal-dependent transcriptional regulator | - |
| RTO_RS05590 (RTO_11690) | 1199782..1200018 | + | 237 | WP_015528449.1 | hypothetical protein | - |
| RTO_RS05595 (RTO_11700) | 1200034..1201413 | - | 1380 | WP_015528450.1 | relaxase/mobilization nuclease domain-containing protein | - |
| RTO_RS05600 (RTO_11710) | 1201380..1201703 | - | 324 | WP_015528451.1 | MobC family plasmid mobilization relaxosome protein | - |
| RTO_RS05605 | 1201953..1202327 | + | 375 | WP_054356897.1 | MmcQ/YjbR family DNA-binding protein | - |
| RTO_RS05610 | 1202404..1202772 | + | 369 | WP_243441194.1 | type IV secretory system conjugative DNA transfer family protein | - |
| RTO_RS05615 (RTO_11740) | 1202845..1204725 | + | 1881 | WP_015524233.1 | recombinase family protein | - |
| RTO_RS05620 (RTO_11750) | 1204752..1205105 | + | 354 | WP_015524234.1 | TnpV protein | - |
| RTO_RS05625 (RTO_11760) | 1205122..1205421 | + | 300 | WP_015524235.1 | hypothetical protein | - |
| RTO_RS05630 (RTO_11770) | 1205449..1205817 | - | 369 | WP_015524236.1 | helix-turn-helix transcriptional regulator | - |
| RTO_RS05635 (RTO_11780) | 1205962..1206150 | + | 189 | WP_015524237.1 | helix-turn-helix domain-containing protein | - |
| RTO_RS05640 (RTO_11790) | 1206143..1206844 | + | 702 | WP_015524238.1 | response regulator transcription factor | - |
| RTO_RS05645 (RTO_11800) | 1206847..1207770 | + | 924 | WP_015524239.1 | HAMP domain-containing sensor histidine kinase | - |
| RTO_RS05650 (RTO_11810) | 1207876..1208643 | + | 768 | WP_015524240.1 | ABC transporter permease | - |
| RTO_RS05655 (RTO_11820) | 1208656..1209081 | + | 426 | WP_015524241.1 | DUF3887 domain-containing protein | - |
| RTO_RS05660 (RTO_11830) | 1209099..1210022 | + | 924 | WP_101105791.1 | ABC transporter ATP-binding protein | - |
| RTO_RS05665 | 1210015..1210746 | + | 732 | WP_055221125.1 | ABC transporter permease | - |
| RTO_RS05670 | 1210760..1211491 | + | 732 | WP_173012942.1 | ABC transporter permease | - |
| RTO_RS05675 (RTO_11860) | 1211961..1212374 | + | 414 | WP_015524243.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| RTO_RS05680 (RTO_11870) | 1212478..1212930 | + | 453 | WP_015524244.1 | hypothetical protein | - |
| RTO_RS05685 (RTO_11880) | 1212941..1213402 | + | 462 | WP_015528452.1 | sigma-70 family RNA polymerase sigma factor | - |
| RTO_RS05690 (RTO_11890) | 1213431..1213721 | + | 291 | WP_015524246.1 | DUF3847 domain-containing protein | - |
| RTO_RS05695 (RTO_11900) | 1213909..1215354 | + | 1446 | WP_082424716.1 | MobQ family relaxase | - |
| RTO_RS05700 (RTO_11910) | 1215432..1215722 | - | 291 | WP_002596328.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| RTO_RS05705 (RTO_11920) | 1215719..1215997 | - | 279 | WP_005924829.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| RTO_RS05710 (RTO_11930) | 1216124..1216522 | + | 399 | WP_015528454.1 | cysteine-rich VLP domain-containing protein | - |
| RTO_RS05715 (RTO_11940) | 1216636..1217370 | + | 735 | WP_015528455.1 | phage replisome organizer N-terminal domain-containing protein | - |
| RTO_RS05720 (RTO_11950) | 1217367..1218230 | + | 864 | WP_015528456.1 | ATP-binding protein | - |
| RTO_RS05725 (RTO_11960) | 1218274..1218468 | + | 195 | WP_002596333.1 | transposon-encoded TnpW family protein | - |
| RTO_RS05730 (RTO_11970) | 1218546..1218911 | + | 366 | WP_015528457.1 | hypothetical protein | - |
| RTO_RS05735 | 1219067..1219399 | + | 333 | WP_243441229.1 | type IV secretory system conjugative DNA transfer family protein | - |
| RTO_RS05740 | 1221017..1222965 | + | 1949 | WP_208913272.1 | ATP-binding protein | - |
| RTO_RS05745 | 1224017..1225988 | + | 1972 | WP_208913273.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| RTO_RS05750 | 1226030..1226323 | + | 294 | WP_055039927.1 | DUF4315 family protein | - |
| RTO_RS05755 | 1226289..1227441 | + | 1153 | WP_208913274.1 | DUF4366 domain-containing protein | - |
| RTO_RS05760 | 1227804..1229670 | + | 1867 | WP_208913275.1 | DNA topoisomerase | - |
| RTO_RS05765 | 1229736..1230227 | + | 492 | WP_208913276.1 | hypothetical protein | - |
| RTO_RS15795 | 1230803..1235289 | + | 4487 | WP_208913277.1 | SpaA isopeptide-forming pilin-related protein | - |
| RTO_RS05775 | 1235927..1236582 | + | 656 | WP_208913278.1 | SpaA isopeptide-forming pilin-related protein | - |
| RTO_RS05780 (RTO_12080) | 1236668..1236808 | + | 141 | WP_015528458.1 | hypothetical protein | - |
| RTO_RS05785 (RTO_12090) | 1236815..1237903 | + | 1089 | WP_015528459.1 | DUF5688 family protein | - |
| RTO_RS05790 | 1237972..1238806 | + | 835 | Protein_1151 | adenine methyltransferase | - |
| RTO_RS05795 | 1240474..1241930 | + | 1457 | WP_208913444.1 | class I SAM-dependent methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|