MGE detailed information
MGE type: IScluster/Tn MGE length: 17787 bp
Accession: NC_019292 Location: 2508..20294 Organism: Pseudomonas savastanoi Replicon: plasmid pPsv48C
Accession: NC_019292 Location: 2508..20294 Organism: Pseudomonas savastanoi Replicon: plasmid pPsv48C
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSPSV_RS00005 (PSPSV_C0001) | 1..1314 | + | 1314 | WP_015060860.1 | replication initiation protein | - |
| PSPSV_RS00010 (PSPSV_C0002) | 1540..1833 | + | 294 | WP_002556165.1 | HU family DNA-binding protein | - |
| PSPSV_RS00015 (PSPSV_C0003) | 1920..2105 | + | 186 | WP_122267529.1 | stability determinant | Antitoxin Detail |
| PSPSV_RS00020 (PSPSV_C0004) | 2105..2398 | + | 294 | WP_003348565.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PSPSV_RS00025 (PSPSV_C0005) | 2508..3392 | - | 885 | Protein_4 | IS3 family transposase IS51 | Transposase |
| PSPSV_RS00030 (PSPSV_C0006) | 3440..3973 | - | 534 | WP_057425675.1 | hypothetical protein | - |
| PSPSV_RS00035 (PSPSV_C0007) | 3979..4272 | - | 294 | WP_002556167.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PSPSV_RS00040 (PSPSV_C0008) | 4260..4532 | - | 273 | WP_002556168.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| PSPSV_RS00045 (PSPSV_C0010) | 4800..4922 | - | 123 | Protein_8 | stability/partitioning determinant | - |
| PSPSV_RS00050 | 5155..5529 | - | 375 | Protein_9 | integrase core domain-containing protein | - |
| PSPSV_RS00055 (PSPSV_C0013) | 5579..6801 | + | 1223 | WP_168550525.1 | IS3 family transposase IS51 | Transposase |
| PSPSV_RS00060 | 6840..7866 | - | 1027 | Protein_11 | transposase | - |
| PSPSV_RS00065 (PSPSV_C0015) | 8055..9041 | - | 987 | WP_244295729.1 | hypothetical protein | - |
| PSPSV_RS00070 (PSPSV_C0016) | 9087..9340 | - | 254 | Protein_13 | IS3 family transposase ISPsy24 | Transposase |
| PSPSV_RS00075 | 9881..10243 | - | 363 | WP_005730278.1 | hypothetical protein | - |
| PSPSV_RS00080 (PSPSV_C0017) | 10234..10914 | - | 681 | WP_005730279.1 | AAA family ATPase | - |
| PSPSV_RS00085 (PSPSV_C0018) | 11470..12504 | - | 1035 | WP_015060660.1 | IS110 family transposase ISPsy16 | Transposase |
| PSPSV_RS00090 (PSPSV_C0020) | 13595..14155 | + | 561 | WP_015060866.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| PSPSV_RS00095 | 14195..14794 | + | 600 | Protein_18 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| PSPSV_RS00100 (PSPSV_C0021) | 14905..15939 | + | 1035 | WP_015060660.1 | IS110 family transposase ISPsy16 | Transposase |
| PSPSV_RS00105 (PSPSV_C0022) | 16285..16668 | - | 384 | Protein_20 | IS5 family transposase ISPre1 | Transposase |
| PSPSV_RS00110 (PSPSV_C0023) | 16777..18450 | + | 1674 | WP_015060867.1 | radical SAM protein | - |
| PSPSV_RS00115 (PSPSV_C0024) | 18473..18931 | + | 459 | WP_015060868.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PSPSV_RS00125 (PSPSV_C0027) | 20469..20876 | - | 408 | WP_015060869.1 | hypothetical protein | - |
| PSPSV_RS00130 (PSPSV_C0028) | 21262..21987 | + | 726 | WP_015060870.1 | ribbon-helix-helix domain-containing protein | - |
| PSPSV_RS00260 | 21977..22681 | + | 705 | Protein_26 | relaxase/mobilization nuclease domain-containing protein | - |
| PSPSV_RS00265 | 22974..23393 | + | 420 | WP_244295731.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|