MGE detailed information
MGE type: Conjugative plasmid MGE length: 45220 bp
Accession: NC_019266 Location: 1..45220 Organism: Pseudomonas savastanoi Replicon: plasmid pPsv48B
Accession: NC_019266 Location: 1..45220 Organism: Pseudomonas savastanoi Replicon: plasmid pPsv48B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSA3335_RS00005 (PSA3335_B0001) | 1..1314 | + | 1314 | WP_015060670.1 | replication initiation protein | - |
| PSA3335_RS00010 (PSA3335_B0002) | 1541..1828 | + | 288 | WP_004667956.1 | HU family DNA-binding protein | - |
| PSA3335_RS00015 (PSA3335_B0003) | 1973..2671 | + | 699 | WP_015060671.1 | GNAT family N-acetyltransferase | - |
| PSA3335_RS00020 (PSA3335_B0004) | 2999..3271 | + | 273 | WP_015060672.1 | hypothetical protein | - |
| PSA3335_RS00025 (PSA3335_B0005) | 3274..3708 | + | 435 | WP_015060673.1 | hypothetical protein | Relaxase |
| PSA3335_RS00030 (PSA3335_B0006) | 3818..6484 | + | 2667 | WP_005740914.1 | hypothetical protein | - |
| PSA3335_RS00035 (PSA3335_B0007) | 6466..7623 | + | 1158 | WP_015060674.1 | putative DNA binding domain-containing protein | - |
| PSA3335_RS00040 | 7976..8125 | + | 150 | WP_168550519.1 | IS5 family transposase ISPst8 | Transposase |
| PSA3335_RS00275 (PSA3335_B0010) | 9501..10901 | + | 1401 | WP_002556090.1 | protein-tyrosine phosphatase family protein | - |
| PSA3335_RS00055 (PSA3335_B0011) | 11113..11436 | - | 324 | WP_015060675.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| PSA3335_RS00060 (PSA3335_B0012) | 11433..11657 | - | 225 | WP_015060676.1 | antitoxin MazE family protein | Antitoxin Detail |
| PSA3335_RS00065 (PSA3335_B0013) | 12220..12873 | + | 654 | WP_015060677.1 | Iron-sulfur cluster carrier protein | VF |
| PSA3335_RS00070 (PSA3335_B0014) | 12922..13233 | + | 312 | WP_168550520.1 | stability/partitioning determinant | - |
| PSA3335_RS00075 (PSA3335_B0016) | 13552..13938 | - | 387 | WP_244312839.1 | hypothetical protein | - |
| PSA3335_RS00080 (PSA3335_B0017) | 14176..14610 | - | 435 | WP_244312841.1 | DUF6392 family protein | - |
| PSA3335_RS00085 (PSA3335_B0018) | 14734..15006 | - | 273 | WP_244312843.1 | helix-turn-helix transcriptional regulator | - |
| PSA3335_RS00090 (PSA3335_B0019) | 15348..15875 | + | 528 | WP_015060683.1 | transcription termination/antitermination NusG family protein | - |
| PSA3335_RS00095 (PSA3335_B0020) | 15889..16155 | + | 267 | WP_228409371.1 | hypothetical protein | - |
| PSA3335_RS00100 (PSA3335_B0021) | 16184..16900 | + | 717 | WP_002556091.1 | Type IV secretion system protein virB1 | VF |
| PSA3335_RS00105 (PSA3335_B0022) | 16897..17235 | + | 339 | WP_002556092.1 | hypothetical protein | - |
| PSA3335_RS00110 (PSA3335_B0023) | 17248..17736 | + | 489 | WP_015060685.1 | VirB3 family type IV secretion system protein | - |
| PSA3335_RS00115 (PSA3335_B0024) | 17663..20137 | + | 2475 | WP_168550521.1 | conjugal transfer protein | - |
| PSA3335_RS00120 (PSA3335_B0025) | 20134..20820 | + | 687 | WP_002556094.1 | P-type DNA transfer protein VirB5 | - |
| PSA3335_RS00125 | 20852..21205 | + | 354 | WP_003347409.1 | hypothetical protein | - |
| PSA3335_RS00130 (PSA3335_B0026) | 21216..22148 | + | 933 | WP_002556095.1 | type IV secretion system protein | - |
| PSA3335_RS00135 (PSA3335_B0028) | 22573..23361 | + | 789 | WP_002556096.1 | type IV secretion system protein | - |
| PSA3335_RS00140 (PSA3335_B0029) | 23351..24160 | + | 810 | WP_002556097.1 | P-type conjugative transfer protein VirB9 | - |
| PSA3335_RS00145 (PSA3335_B0030) | 24147..25496 | + | 1350 | WP_002556098.1 | Type IV secretion system protein virB10 | VF |
| PSA3335_RS00150 (PSA3335_B0031) | 25506..26564 | + | 1059 | WP_002556099.1 | Type IV secretion system protein VirB11 | VF |
| PSA3335_RS00155 (PSA3335_B0032) | 26574..26960 | + | 387 | WP_002556100.1 | hypothetical protein | - |
| PSA3335_RS00160 (PSA3335_B0033) | 26945..27310 | + | 366 | WP_002556101.1 | hypothetical protein | - |
| PSA3335_RS00165 (PSA3335_B0034) | 27357..27623 | + | 267 | WP_015060688.1 | hypothetical protein | - |
| PSA3335_RS00170 (PSA3335_B0035) | 27748..30157 | + | 2410 | Protein_33 | ATP-binding protein | - |
| PSA3335_RS00175 (PSA3335_B0036) | 30204..30506 | + | 303 | WP_002556103.1 | hypothetical protein | - |
| PSA3335_RS00180 (PSA3335_B0037) | 30506..32143 | + | 1638 | WP_015060689.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PSA3335_RS00185 (PSA3335_B0038) | 32184..32546 | + | 363 | WP_015060690.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| PSA3335_RS00190 (PSA3335_B0039) | 32574..34739 | + | 2166 | WP_002556105.1 | type IA DNA topoisomerase | - |
| PSA3335_RS00195 | 34766..35050 | + | 285 | WP_057412150.1 | hypothetical protein | - |
| PSA3335_RS00200 (PSA3335_B0041) | 35078..35650 | + | 573 | WP_002556106.1 | single-stranded DNA-binding protein | - |
| PSA3335_RS00205 (PSA3335_B0042) | 35987..36721 | + | 735 | WP_015060692.1 | StbB family protein | - |
| PSA3335_RS00210 (PSA3335_B0043) | 36718..37290 | + | 573 | WP_002556108.1 | hypothetical protein | - |
| PSA3335_RS00215 (PSA3335_B0044) | 37305..37694 | - | 390 | WP_015060693.1 | hypothetical protein | - |
| PSA3335_RS00220 (PSA3335_B0045) | 38061..38411 | + | 351 | WP_002556109.1 | hypothetical protein | Relaxase |
| PSA3335_RS00265 | 38902..39387 | - | 486 | WP_244312837.1 | hypothetical protein | Relaxase |
| PSA3335_RS00270 | 39398..39802 | + | 405 | WP_244312844.1 | hypothetical protein | Relaxase |
| PSA3335_RS00225 | 40573..42174 | + | 1602 | WP_244312845.1 | hypothetical protein | Relaxase |
| PSA3335_RS00230 (PSA3335_B0047) | 42305..42550 | + | 246 | WP_015060694.1 | PapB/FocB family fimbrial expression transcriptional regulator | - |
| PSA3335_RS00235 (PSA3335_B0048) | 42627..42764 | + | 138 | WP_002556112.1 | hypothetical protein | - |
| PSA3335_RS00240 (PSA3335_B0049) | 42895..43323 | + | 429 | WP_015060695.1 | GntR family transcriptional regulator | - |
| PSA3335_RS00245 (PSA3335_B0051) | 43677..44579 | + | 903 | WP_168550522.1 | hypothetical protein | - |
| PSA3335_RS00250 (PSA3335_B0052) | 44596..44823 | + | 228 | WP_015060698.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|