MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 117003 bp
Accession: NC_018746 Location: 1..117003 Organism: Pseudomonas putida ND6 Replicon: plasmid pND6-2
Accession: NC_018746 Location: 1..117003 Organism: Pseudomonas putida ND6 Replicon: plasmid pND6-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YSA_RS29145 () | 70..1239 | - | 1170 | WP_015026424.1 | tyrosine-type recombinase/integrase | - |
| YSA_RS29150 () | 1211..1492 | - | 282 | WP_041167404.1 | helix-turn-helix domain-containing protein | - |
| YSA_RS29155 () | 1645..1980 | + | 336 | WP_015026426.1 | hypothetical protein | - |
| YSA_RS29160 () | 2089..4353 | - | 2265 | WP_009685665.1 | DotA/TraY family protein | - |
| YSA_RS29165 () | 4666..5163 | + | 498 | WP_015026427.1 | hypothetical protein | - |
| YSA_RS29170 () | 5156..5647 | + | 492 | WP_033955277.1 | hypothetical protein | - |
| YSA_RS29175 () | 5663..6793 | + | 1131 | WP_110389093.1 | hypothetical protein | - |
| YSA_RS29180 () | 6895..7884 | + | 990 | WP_015026430.1 | hypothetical protein | - |
| YSA_RS29190 () | 8265..8777 | + | 513 | WP_009685675.1 | hypothetical protein | - |
| YSA_RS29195 () | 8788..9435 | + | 648 | WP_181406968.1 | hypothetical protein | - |
| YSA_RS29200 () | 9541..10149 | + | 609 | WP_009685677.1 | hypothetical protein | - |
| YSA_RS29205 () | 10130..10648 | + | 519 | WP_041167407.1 | hypothetical protein | - |
| YSA_RS29210 () | 10748..11131 | - | 384 | WP_015026435.1 | hypothetical protein | - |
| YSA_RS29215 () | 11136..11669 | - | 534 | WP_015026436.1 | hypothetical protein | - |
| YSA_RS29220 () | 11890..12321 | - | 432 | WP_015026437.1 | type IV pilus biogenesis protein PilM | - |
| YSA_RS29225 () | 12489..13871 | + | 1383 | WP_015026439.1 | hypothetical protein | - |
| YSA_RS29230 () | 13887..14990 | + | 1104 | WP_041167409.1 | hypothetical protein | - |
| YSA_RS29235 () | 14992..15252 | + | 261 | WP_015026441.1 | hypothetical protein | - |
| YSA_RS29240 () | 15396..15845 | + | 450 | WP_041167428.1 | hypothetical protein | - |
| YSA_RS29245 () | 15846..17435 | + | 1590 | WP_110389094.1 | type IA DNA topoisomerase | - |
| YSA_RS29250 () | 17464..17715 | + | 252 | WP_015026444.1 | hypothetical protein | - |
| YSA_RS29255 () | 17798..18223 | + | 426 | WP_009681560.1 | hypothetical protein | - |
| YSA_RS29260 () | 18223..19395 | + | 1173 | WP_015026445.1 | hypothetical protein | - |
| YSA_RS29265 () | 19388..19855 | + | 468 | WP_015026446.1 | hypothetical protein | - |
| YSA_RS29270 () | 19870..20280 | + | 411 | WP_047150118.1 | lytic transglycosylase domain-containing protein | - |
| YSA_RS29275 () | 20277..21419 | + | 1143 | WP_041167410.1 | hypothetical protein | - |
| YSA_RS29280 () | 21412..22191 | + | 780 | WP_110389095.1 | hypothetical protein | - |
| YSA_RS29285 () | 22206..24737 | + | 2532 | WP_015026451.1 | putative IcmO-like type IV secretion system protein | - |
| YSA_RS29290 () | 24734..25354 | + | 621 | WP_009681552.1 | DUF882 domain-containing protein | - |
| YSA_RS29295 () | 25342..26136 | + | 795 | WP_041167411.1 | thiol:disulfide interchange protein DsbG | - |
| YSA_RS29300 () | 26219..26620 | + | 402 | WP_041167412.1 | hypothetical protein | - |
| YSA_RS30175 () | 26816..26974 | + | 159 | WP_009681549.1 | hypothetical protein | - |
| YSA_RS29305 () | 26980..28602 | + | 1623 | WP_015026455.1 | DUF1738 domain-containing protein | - |
| YSA_RS29310 () | 28618..29790 | + | 1173 | WP_015026456.1 | hypothetical protein | - |
| YSA_RS30180 () | 29894..30058 | - | 165 | WP_009681546.1 | hypothetical protein | - |
| YSA_RS29315 () | 30181..31122 | + | 942 | WP_015026457.1 | tyrosine-type recombinase/integrase | - |
| YSA_RS29320 () | 31187..31807 | + | 621 | WP_015026458.1 | hypothetical protein | - |
| YSA_RS29325 () | 31828..37908 | + | 6081 | WP_080580407.1 | hypothetical protein | - |
| YSA_RS29330 () | 37962..38432 | - | 471 | WP_015026460.1 | hypothetical protein | - |
| YSA_RS29335 () | 38443..40062 | - | 1620 | WP_015026461.1 | DNA sulfur modification protein DndB | - |
| YSA_RS29345 () | 40350..40700 | - | 351 | WP_110389102.1 | hypothetical protein | - |
| YSA_RS29350 () | 40755..41609 | - | 855 | WP_110389103.1 | SprT-like domain-containing protein | - |
| YSA_RS29355 () | 41731..42009 | - | 279 | WP_009683795.1 | HU family DNA-binding protein | - |
| YSA_RS29360 () | 42075..42362 | - | 288 | WP_131201113.1 | hypothetical protein | - |
| YSA_RS29365 () | 42782..43066 | + | 285 | WP_015026466.1 | hypothetical protein | - |
| YSA_RS29370 () | 43075..44007 | + | 933 | WP_015026467.1 | recombination-associated protein RdgC | - |
| YSA_RS29375 () | 44013..46088 | + | 2076 | WP_015026468.1 | DNA cytosine methyltransferase | - |
| YSA_RS29380 () | 46078..46308 | + | 231 | WP_015026469.1 | hypothetical protein | - |
| YSA_RS29385 () | 46305..46841 | + | 537 | WP_015026470.1 | hypothetical protein | - |
| YSA_RS29390 () | 46838..47521 | + | 684 | WP_015026471.1 | hypothetical protein | - |
| YSA_RS29395 () | 47530..47949 | + | 420 | WP_015026472.1 | hypothetical protein | - |
| YSA_RS29400 () | 47978..48454 | + | 477 | WP_015026473.1 | single-stranded DNA-binding protein | - |
| YSA_RS29410 () | 48990..49238 | + | 249 | WP_041167414.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| YSA_RS29415 () | 49235..49603 | + | 369 | WP_015026476.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| YSA_RS29420 () | 49600..49830 | + | 231 | WP_015026477.1 | hypothetical protein | - |
| YSA_RS29425 () | 49997..50425 | + | 429 | WP_015026478.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| YSA_RS29430 () | 50415..51698 | + | 1284 | WP_015026479.1 | Y-family DNA polymerase | - |
| YSA_RS29435 () | 51740..52192 | - | 453 | WP_015026480.1 | hypothetical protein | - |
| YSA_RS29440 () | 52429..52923 | - | 495 | WP_110389096.1 | hypothetical protein | - |
| YSA_RS29445 () | 52905..54251 | - | 1347 | WP_009684314.1 | replicative DNA helicase | - |
| YSA_RS29450 () | 54438..54899 | - | 462 | WP_049806390.1 | hypothetical protein | - |
| YSA_RS29455 () | 55092..55409 | - | 318 | WP_110389097.1 | hypothetical protein | - |
| YSA_RS29460 () | 55502..56215 | - | 714 | WP_041167415.1 | hypothetical protein | - |
| YSA_RS29465 () | 56229..58208 | - | 1980 | WP_015026487.1 | DEAD/DEAH box helicase | - |
| YSA_RS29470 () | 58287..58637 | - | 351 | WP_015026488.1 | hypothetical protein | - |
| YSA_RS29475 () | 59071..59535 | - | 465 | WP_033955315.1 | hypothetical protein | - |
| YSA_RS29480 () | 59723..60049 | - | 327 | WP_015026490.1 | hypothetical protein | - |
| YSA_RS29485 () | 60496..61902 | - | 1407 | WP_049806391.1 | hypothetical protein | - |
| YSA_RS30185 () | 61925..62134 | + | 210 | WP_015026493.1 | hypothetical protein | - |
| YSA_RS29495 () | 62209..62922 | - | 714 | WP_009684325.1 | EAL domain-containing protein | - |
| YSA_RS29500 () | 62950..63465 | - | 516 | WP_080580408.1 | hypothetical protein | - |
| YSA_RS29505 () | 63521..64201 | - | 681 | WP_110389104.1 | hypothetical protein | - |
| YSA_RS29510 () | 64214..66319 | - | 2106 | WP_148667270.1 | topoisomerase DNA-binding C4 zinc finger domain-containing protein | - |
| YSA_RS29515 () | 66459..66737 | + | 279 | WP_015026498.1 | hypothetical protein | - |
| YSA_RS29520 () | 66754..67098 | - | 345 | WP_015026499.1 | hypothetical protein | - |
| YSA_RS29525 () | 67108..72336 | - | 5229 | WP_041167417.1 | strawberry notch C-terminal domain-containing protein | - |
| YSA_RS29530 () | 72412..73713 | - | 1302 | WP_009684332.1 | hypothetical protein | - |
| YSA_RS29535 () | 73749..75248 | - | 1500 | WP_181406969.1 | UvrD-helicase domain-containing protein | - |
| YSA_RS29540 () | 75387..75992 | - | 606 | WP_041167418.1 | hypothetical protein | - |
| YSA_RS29545 () | 76032..76751 | - | 720 | WP_181406970.1 | A24 family peptidase | - |
| YSA_RS29550 () | 76788..77564 | - | 777 | WP_041167419.1 | hypothetical protein | - |
| YSA_RS29555 () | 77768..78373 | - | 606 | WP_015026506.1 | hypothetical protein | - |
| YSA_RS29560 () | 78515..78772 | - | 258 | WP_015026507.1 | hypothetical protein | - |
| YSA_RS29950 () | 78952..79386 | - | 435 | WP_148667269.1 | hypothetical protein | - |
| YSA_RS29575 () | 81206..81382 | + | 177 | WP_110389100.1 | hypothetical protein | - |
| YSA_RS29585 () | 82406..82675 | - | 270 | WP_015026511.1 | hypothetical protein | - |
| YSA_RS29590 () | 82668..83900 | - | 1233 | WP_015026512.1 | hypothetical protein | - |
| YSA_RS29595 () | 83900..84613 | - | 714 | WP_015026513.1 | HNH endonuclease | - |
| YSA_RS29600 () | 84628..85020 | - | 393 | WP_041167421.1 | hypothetical protein | - |
| YSA_RS29605 () | 85038..85571 | - | 534 | WP_009684347.1 | hypothetical protein | - |
| YSA_RS29610 () | 85582..86514 | - | 933 | WP_015026515.1 | hypothetical protein | - |
| YSA_RS29615 () | 86514..87758 | - | 1245 | WP_015026516.1 | hypothetical protein | - |
| YSA_RS29620 () | 87761..88681 | - | 921 | WP_015026517.1 | type IV secretion system protein IcmK | - |
| YSA_RS29625 () | 88678..89331 | - | 654 | WP_015026518.1 | DotI/IcmL family type IV secretion protein | - |
| YSA_RS29630 () | 89465..89983 | - | 519 | WP_015026519.1 | hypothetical protein | - |
| YSA_RS29635 () | 91279..92598 | + | 1320 | WP_009684354.1 | replication initiation protein | - |
| YSA_RS29640 () | 92984..94033 | - | 1050 | WP_009684355.1 | ParB/RepB/Spo0J family partition protein | - |
| YSA_RS29645 () | 94030..95154 | - | 1125 | WP_009684356.1 | AAA family ATPase | - |
| YSA_RS29650 () | 95454..95726 | + | 273 | WP_034051193.1 | hypothetical protein | - |
| YSA_RS29655 () | 95726..96649 | + | 924 | WP_015026522.1 | hypothetical protein | - |
| YSA_RS29660 () | 96700..97239 | + | 540 | WP_181406971.1 | hypothetical protein | - |
| YSA_RS29665 () | 97295..97528 | + | 234 | WP_015026524.1 | hypothetical protein | - |
| YSA_RS29670 () | 97640..98167 | + | 528 | WP_041167423.1 | hypothetical protein | - |
| YSA_RS29675 () | 98432..99124 | + | 693 | WP_041167424.1 | hypothetical protein | - |
| YSA_RS29680 () | 99338..99700 | + | 363 | WP_015026527.1 | DNA binding protein | - |
| YSA_RS29685 () | 99754..100725 | - | 972 | WP_015026528.1 | site-specific integrase | - |
| YSA_RS29690 () | 101251..101739 | + | 489 | WP_009684367.1 | DotD/TraH family lipoprotein | - |
| YSA_RS29695 () | 101726..102535 | + | 810 | WP_015026529.1 | type IV secretory system conjugative DNA transfer family protein | - |
| YSA_RS29700 () | 102532..103737 | + | 1206 | WP_009684369.1 | Flp pilus assembly complex ATPase component TadA | - |
| YSA_RS29705 () | 103730..103999 | + | 270 | WP_009684370.1 | IcmT/TraK family protein | - |
| YSA_RS29710 () | 104010..105143 | + | 1134 | WP_009684371.1 | ParM/StbA family protein | - |
| YSA_RS29715 () | 105147..105593 | + | 447 | WP_009684372.1 | hypothetical protein | - |
| YSA_RS29720 () | 105621..106463 | + | 843 | WP_015026532.1 | toxin co-regulated pilus biosynthesis Q family protein | - |
| YSA_RS29725 () | 106466..108157 | + | 1692 | WP_015026533.1 | PilN family type IVB pilus formation outer membrane protein | - |
| YSA_RS29730 () | 108160..109503 | + | 1344 | WP_015026534.1 | type 4b pilus protein PilO2 | - |
| YSA_RS29735 () | 109490..110011 | + | 522 | WP_041167425.1 | type IV pilus biogenesis protein PilP | - |
| YSA_RS29740 () | 110031..111593 | + | 1563 | WP_009684379.1 | Flp pilus assembly complex ATPase component TadA | - |
| YSA_RS29745 () | 111595..112677 | + | 1083 | WP_009684380.1 | type II secretion system F family protein | - |
| YSA_RS29750 () | 112674..113276 | + | 603 | WP_009684381.1 | type IV B pilus protein | - |
| YSA_RS29755 () | 113303..114280 | + | 978 | WP_009684382.1 | Flp pilus assembly complex ATPase component TadA | - |
| YSA_RS29760 () | 114277..115362 | + | 1086 | Protein_120 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|