MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 109328 bp
Accession: NC_017845 Location: 1694213..1803540 Organism: Pectobacterium sp. SCC3193 Replicon: chromosome
Accession: NC_017845 Location: 1694213..1803540 Organism: Pectobacterium sp. SCC3193 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| W5S_RS07600 () | 1690018..1690512 | - | 495 | WP_148273026.1 | hypothetical protein | - |
| W5S_RS07605 () | 1690569..1693145 | - | 2577 | WP_014699299.1 | fimbrial biogenesis outer membrane usher protein | - |
| W5S_RS07610 () | 1693165..1693863 | - | 699 | WP_043898989.1 | fimbria/pilus periplasmic chaperone | - |
| W5S_RS07615 () | 1694799..1695089 | + | 291 | WP_014699302.1 | Bor family protein | - |
| W5S_RS07620 () | 1695429..1696643 | + | 1215 | WP_014699303.1 | MASE1 domain-containing protein | - |
| W5S_RS07625 () | 1696670..1697275 | + | 606 | WP_014699304.1 | response regulator | - |
| W5S_RS07630 () | 1697746..1699989 | + | 2244 | WP_043898990.1 | PAS domain-containing sensor histidine kinase | - |
| W5S_RS07635 () | 1699964..1700703 | - | 740 | Protein_1511 | prepilin peptidase | - |
| W5S_RS23370 () | 1700728..1701219 | - | 492 | WP_014699307.1 | type II secretion system protein | - |
| W5S_RS07645 () | 1701209..1701568 | - | 360 | WP_014699308.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| W5S_RS07650 () | 1701555..1702028 | - | 474 | WP_014699309.1 | type II secretion system GspH family protein | - |
| W5S_RS07655 () | 1702039..1703922 | - | 1884 | WP_014699310.1 | secretin and TonB N-terminal domain-containing protein | - |
| W5S_RS07660 () | 1703924..1704439 | - | 516 | WP_014699311.1 | hypothetical protein | - |
| W5S_RS07665 () | 1704436..1704972 | - | 537 | WP_014699312.1 | hypothetical protein | - |
| W5S_RS07670 () | 1704962..1705462 | - | 501 | WP_014699313.1 | hypothetical protein | - |
| W5S_RS07675 () | 1705663..1706268 | - | 606 | WP_043898773.1 | hypothetical protein | - |
| W5S_RS07680 () | 1706327..1707970 | - | 1644 | WP_014699315.1 | GspE/PulE family protein | - |
| W5S_RS07685 () | 1707970..1709139 | - | 1170 | WP_014699316.1 | type II secretion system F family protein | - |
| W5S_RS07690 () | 1709148..1709603 | - | 456 | WP_014699317.1 | lytic transglycosylase domain-containing protein | - |
| W5S_RS07695 () | 1709606..1710025 | - | 420 | WP_014699318.1 | type II secretion system major pseudopilin GspG | - |
| W5S_RS07700 () | 1710270..1710953 | + | 684 | WP_014699319.1 | response regulator transcription factor | - |
| W5S_RS23375 () | 1711115..1713106 | + | 1992 | WP_052314883.1 | hypothetical protein | - |
| W5S_RS07710 () | 1713349..1715232 | + | 1884 | WP_187288990.1 | chitinase | - |
| W5S_RS07715 () | 1715867..1716407 | + | 541 | Protein_1527 | type 1 fimbrial protein | - |
| W5S_RS07720 () | 1716878..1719435 | + | 2558 | Protein_1528 | outer membrane usher protein | - |
| W5S_RS07725 () | 1719487..1720242 | + | 756 | WP_043898997.1 | fimbria/pilus periplasmic chaperone | - |
| W5S_RS07730 () | 1720487..1720933 | + | 447 | WP_043898998.1 | fimbrial protein | - |
| W5S_RS07735 () | 1720948..1721445 | + | 498 | WP_014699329.1 | fimbrial protein | - |
| W5S_RS07740 () | 1721513..1722037 | + | 525 | WP_052314899.1 | type 1 fimbrial protein | - |
| W5S_RS07745 () | 1722183..1722986 | + | 804 | WP_014699331.1 | hypothetical protein | - |
| W5S_RS23380 () | 1723746..1725032 | + | 1287 | WP_014699332.1 | YadA-like family protein | - |
| W5S_RS07755 () | 1725107..1725838 | + | 732 | WP_014699333.1 | glucose 1-dehydrogenase | - |
| W5S_RS07760 () | 1726072..1726521 | + | 450 | WP_014699334.1 | molecular chaperone | - |
| W5S_RS25120 () | 1726493..1726810 | + | 318 | WP_148273027.1 | molecular chaperone | - |
| W5S_RS07765 () | 1726944..1728716 | + | 1773 | WP_187288984.1 | fimbria/pilus outer membrane usher protein | - |
| W5S_RS07770 () | 1728653..1729507 | + | 855 | WP_071822852.1 | fimbrial biogenesis outer membrane usher protein | - |
| W5S_RS07775 () | 1729537..1730610 | + | 1074 | WP_043898776.1 | hypothetical protein | - |
| W5S_RS07780 () | 1730603..1731271 | + | 669 | WP_014699339.1 | type 1 fimbrial protein | - |
| W5S_RS07785 () | 1731349..1732188 | + | 840 | WP_014699340.1 | hypothetical protein | - |
| W5S_RS07790 () | 1732281..1733078 | + | 798 | WP_014699341.1 | hypothetical protein | - |
| W5S_RS07795 () | 1733549..1734526 | + | 978 | WP_014699342.1 | LysR family transcriptional regulator | - |
| W5S_RS07800 () | 1734730..1735356 | + | 627 | WP_014699343.1 | DsbA family protein | - |
| W5S_RS07815 () | 1736962..1737231 | + | 270 | WP_187288985.1 | hypothetical protein | - |
| W5S_RS07820 () | 1737422..1739137 | + | 1716 | WP_014699344.1 | type VI secretion system PAAR protein | - |
| W5S_RS23870 () | 1739134..1739307 | + | 174 | WP_014699345.1 | Gp36 | - |
| W5S_RS23875 () | 1739347..1739555 | + | 209 | Protein_1550 | DUF4926 domain-containing protein | - |
| W5S_RS07825 () | 1739704..1739883 | - | 180 | WP_014699346.1 | hypothetical protein | - |
| W5S_RS07830 () | 1740457..1741892 | - | 1436 | Protein_1552 | TIR domain-containing protein | - |
| W5S_RS07835 () | 1742026..1743303 | - | 1278 | WP_014699349.1 | integrase arm-type DNA-binding domain-containing protein | - |
| W5S_RS07840 () | 1743852..1744937 | + | 1086 | WP_043898777.1 | DNA (cytosine-5-)-methyltransferase | - |
| W5S_RS25125 () | 1745034..1745315 | + | 282 | WP_148273028.1 | hypothetical protein | - |
| W5S_RS07845 () | 1745293..1747743 | + | 2451 | WP_148273029.1 | hypothetical protein | - |
| W5S_RS07850 () | 1747828..1750629 | + | 2802 | WP_014699352.1 | hypothetical protein | - |
| W5S_RS07855 () | 1750644..1756565 | + | 5922 | Protein_1558 | DEAD/DEAH box helicase | - |
| W5S_RS07860 () | 1756611..1757768 | + | 1158 | WP_014699355.1 | PD-(D/E)XK nuclease family protein | - |
| W5S_RS07865 () | 1758618..1759562 | + | 945 | WP_014699356.1 | DUF1738 domain-containing protein | - |
| W5S_RS07870 () | 1759881..1760117 | + | 237 | WP_014699357.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| W5S_RS07875 () | 1760120..1760434 | + | 315 | WP_014699358.1 | CcdB family protein | Toxin Detail |
| W5S_RS07880 () | 1760965..1762219 | + | 1255 | Protein_1563 | hypothetical protein | - |
| W5S_RS07885 () | 1762634..1763761 | + | 1128 | WP_014699361.1 | hypothetical protein | - |
| W5S_RS07890 () | 1763918..1764664 | - | 747 | WP_014699362.1 | hypothetical protein | - |
| W5S_RS07895 () | 1764673..1766535 | - | 1863 | WP_014699363.1 | TraM recognition domain-containing protein | - |
| W5S_RS24860 () | 1766628..1767198 | - | 571 | Protein_1567 | hypothetical protein | - |
| W5S_RS07905 () | 1767259..1767561 | - | 303 | WP_014699365.1 | hypothetical protein | - |
| W5S_RS07910 () | 1767605..1768621 | - | 1017 | WP_014699366.1 | P-type DNA transfer ATPase VirB11 | - |
| W5S_RS07915 () | 1768611..1769828 | - | 1218 | WP_014699367.1 | TrbI/VirB10 family protein | - |
| W5S_RS07920 () | 1769825..1770715 | - | 891 | WP_014699368.1 | P-type conjugative transfer protein VirB9 | - |
| W5S_RS07925 () | 1770715..1771398 | - | 684 | WP_014699369.1 | type IV secretion system protein | - |
| W5S_RS25270 () | 1771391..1771531 | - | 141 | WP_014699370.1 | hypothetical protein | - |
| W5S_RS07935 () | 1771611..1772651 | - | 1041 | WP_014699371.1 | type IV secretion system protein | - |
| W5S_RS07940 () | 1772663..1772887 | - | 225 | WP_014699372.1 | EexN family lipoprotein | - |
| W5S_RS07945 () | 1772898..1773614 | - | 717 | WP_014699373.1 | type IV secretion system protein | - |
| W5S_RS07950 () | 1773638..1776385 | - | 2748 | WP_014699374.1 | VirB3 family type IV secretion system protein | - |
| W5S_RS07955 () | 1776395..1776676 | - | 282 | WP_099017452.1 | TrbC/VirB2 family protein | - |
| W5S_RS07960 () | 1776673..1777338 | - | 666 | WP_014699376.1 | lytic transglycosylase domain-containing protein | - |
| W5S_RS07965 () | 1777417..1777638 | - | 222 | WP_014699377.1 | hypothetical protein | - |
| W5S_RS07970 () | 1778256..1779245 | + | 990 | WP_014699378.1 | hypothetical protein | - |
| W5S_RS07975 () | 1779729..1779938 | - | 210 | WP_014699379.1 | TraR/DksA family transcriptional regulator | - |
| W5S_RS07980 () | 1779928..1780512 | - | 585 | WP_014699380.1 | DUF2857 domain-containing protein | - |
| W5S_RS07985 () | 1780529..1780723 | - | 195 | WP_014699381.1 | AlpA family transcriptional regulator | - |
| W5S_RS07990 () | 1780877..1781791 | - | 915 | WP_014699382.1 | hypothetical protein | - |
| W5S_RS07995 () | 1782207..1782479 | - | 273 | WP_014699383.1 | helix-turn-helix domain-containing protein | - |
| W5S_RS08000 () | 1782626..1782940 | + | 315 | WP_014699384.1 | helix-turn-helix domain-containing protein | - |
| W5S_RS08005 () | 1783126..1783440 | + | 315 | WP_014699385.1 | helix-turn-helix domain-containing protein | - |
| W5S_RS08010 () | 1783575..1784846 | - | 1272 | WP_014699386.1 | tyrosine-type recombinase/integrase | - |
| W5S_RS08015 () | 1785589..1785882 | + | 294 | WP_014699387.1 | hypothetical protein | - |
| W5S_RS08020 () | 1786154..1786336 | - | 183 | WP_014699388.1 | hypothetical protein | - |
| W5S_RS08025 () | 1786502..1787353 | + | 852 | WP_014699389.1 | hypothetical protein | - |
| W5S_RS08030 () | 1787476..1787658 | + | 183 | WP_014699390.1 | AlpA family transcriptional regulator | - |
| W5S_RS08035 () | 1788522..1788680 | + | 159 | Protein_1594 | conjugal transfer protein TraD | - |
| W5S_RS08040 () | 1788937..1789338 | - | 402 | WP_014699392.1 | hypothetical protein | - |
| W5S_RS23885 () | 1789772..1790066 | - | 295 | Protein_1596 | IS30 family transposase | - |
| W5S_RS08045 () | 1790124..1791049 | - | 926 | Protein_1597 | IS5 family transposase | - |
| W5S_RS08050 () | 1791494..1792657 | + | 1164 | WP_099092850.1 | site-specific integrase | - |
| W5S_RS08055 () | 1792654..1793958 | + | 1305 | WP_014699396.1 | tyrosine-type recombinase/integrase | - |
| W5S_RS08060 () | 1793951..1795618 | + | 1668 | WP_014699397.1 | DNA-binding protein | - |
| W5S_RS08065 () | 1795667..1796056 | + | 390 | WP_014699398.1 | hypothetical protein | - |
| W5S_RS08070 () | 1796181..1796591 | + | 411 | WP_014699399.1 | hypothetical protein | - |
| W5S_RS08075 () | 1796756..1797096 | + | 341 | Protein_1603 | SOS response-associated peptidase family protein | - |
| W5S_RS08080 () | 1797217..1797522 | - | 306 | WP_014699401.1 | hypothetical protein | - |
| W5S_RS08085 () | 1797536..1798225 | - | 690 | Protein_1605 | hypothetical protein | - |
| W5S_RS08090 () | 1799609..1799932 | - | 324 | WP_014699404.1 | hypothetical protein | - |
| W5S_RS08095 () | 1799972..1800346 | - | 375 | WP_014699405.1 | hypothetical protein | - |
| W5S_RS08100 () | 1800383..1801186 | - | 804 | WP_014699406.1 | hypothetical protein | - |
| W5S_RS08105 () | 1801505..1802908 | - | 1404 | WP_014699407.1 | relaxase/mobilization nuclease domain-containing protein | - |
| W5S_RS08110 () | 1802877..1803254 | - | 378 | WP_014699408.1 | hypothetical protein | - |
| W5S_RS08115 () | 1803441..1804136 | - | 696 | WP_014699409.1 | ankyrin repeat domain-containing protein | - |
| W5S_RS08120 () | 1804209..1804787 | - | 579 | WP_014699410.1 | hypothetical protein | - |
| W5S_RS08125 () | 1805291..1805566 | + | 276 | WP_014699411.1 | His-Xaa-Ser system protein HxsD | - |
| W5S_RS08130 () | 1805829..1807856 | + | 2028 | WP_014699413.1 | AAA family ATPase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|