MGE detailed information
MGE type: Conjugative plasmid MGE length: 160573 bp
Accession: NC_017645 Location: 1..160573 Organism: Escherichia coli UMNK88 Replicon: plasmid pUMNK88
Accession: NC_017645 Location: 1..160573 Organism: Escherichia coli UMNK88 Replicon: plasmid pUMNK88
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
UMNK88_RS28370 () | 323..862 | + | 540 | WP_001447712.1 | hypothetical protein | - |
UMNK88_RS28375 () | 867..1154 | + | 288 | WP_000127321.1 | hypothetical protein | - |
UMNK88_RS28380 () | 1139..2239 | + | 1101 | WP_000350011.1 | plasmid replication protein | - |
UMNK88_RS28390 () | 3276..3710 | - | 435 | WP_000883925.1 | hypothetical protein | - |
UMNK88_RS28395 () | 3728..4843 | - | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
UMNK88_RS28400 () | 5112..5720 | + | 609 | WP_000849071.1 | hypothetical protein | - |
UMNK88_RS28405 () | 5725..6246 | + | 522 | WP_000393785.1 | hypothetical protein | - |
UMNK88_RS28410 () | 6249..6770 | + | 522 | WP_000805800.1 | hypothetical protein | - |
UMNK88_RS28415 () | 6867..7340 | + | 474 | WP_000057877.1 | hypothetical protein | - |
UMNK88_RS28420 () | 7351..7644 | + | 294 | WP_001370730.1 | hypothetical protein | - |
UMNK88_RS28425 () | 7649..8503 | + | 855 | WP_000539392.1 | hypothetical protein | - |
UMNK88_RS28430 () | 8503..9462 | + | 960 | WP_000829616.1 | S49 family peptidase | - |
UMNK88_RS28435 () | 9478..10338 | + | 861 | WP_000139698.1 | DsbA family protein | - |
UMNK88_RS28440 () | 10372..10800 | + | 429 | WP_000591074.1 | hypothetical protein | - |
UMNK88_RS28445 () | 10857..11216 | + | 360 | WP_000422768.1 | hypothetical protein | - |
UMNK88_RS28450 () | 11216..11662 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
UMNK88_RS28455 () | 11659..12177 | + | 519 | WP_000210756.1 | nitrite reductase | - |
UMNK88_RS28460 () | 12177..12407 | + | 231 | WP_000972663.1 | hypothetical protein | - |
UMNK88_RS28465 () | 12394..13251 | + | 858 | WP_001167032.1 | hypothetical protein | - |
UMNK88_RS28470 () | 13277..13465 | + | 189 | WP_001270411.1 | hypothetical protein | - |
UMNK88_RS28475 () | 13482..14009 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
UMNK88_RS28480 () | 14067..14339 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
UMNK88_RS28485 () | 14427..14720 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
UMNK88_RS28490 () | 14747..15049 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
UMNK88_RS28495 () | 15054..15404 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
UMNK88_RS28500 () | 15567..16115 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
UMNK88_RS32945 () | 16456..16650 | + | 195 | WP_000343597.1 | hypothetical protein | - |
UMNK88_RS32950 () | 16661..17032 | + | 372 | WP_000516916.1 | hypothetical protein | - |
UMNK88_RS28520 () | 17025..17495 | + | 471 | WP_001281821.1 | hypothetical protein | - |
UMNK88_RS28525 () | 17510..17845 | - | 336 | WP_000683476.1 | hypothetical protein | - |
UMNK88_RS28530 () | 17942..18430 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
UMNK88_RS28535 () | 18433..18930 | + | 498 | WP_000062185.1 | hypothetical protein | - |
UMNK88_RS28540 () | 19145..19849 | - | 705 | WP_024250745.1 | IS6 family transposase IS26 | Transposase |
UMNK88_RS28545 () | 19914..20093 | - | 180 | Protein_33 | helix-turn-helix transcriptional regulator | - |
UMNK88_RS28550 () | 20400..21104 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
UMNK88_RS34160 () | 21110..21250 | + | 141 | WP_001044210.1 | hypothetical protein | - |
UMNK88_RS28555 () | 21735..22472 | + | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
UMNK88_RS28560 () | 22469..22693 | + | 225 | WP_000743213.1 | hypothetical protein | - |
UMNK88_RS28565 () | 22904..24397 | + | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
UMNK88_RS34565 () | 24866..25312 | + | 447 | Protein_39 | DUF3363 domain-containing protein | - |
UMNK88_RS28575 () | 25529..26743 | + | 1215 | WP_000214123.1 | Inner membrane transport protein YdhC | ARG |
UMNK88_RS28580 () | 26771..27076 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
UMNK88_RS33625 () | 27188..27376 | + | 189 | Protein_42 | IS91 family transposase | - |
UMNK88_RS28585 () | 27343..28542 | - | 1200 | WP_000804063.1 | Tetracycline resistance protein, class C | ARG |
UMNK88_RS28590 () | 28648..29298 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
UMNK88_RS28595 () | 29330..29572 | - | 243 | WP_000844627.1 | transposase | - |
UMNK88_RS28605 () | 29878..30714 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
UMNK88_RS28610 () | 30714..31517 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
UMNK88_RS28615 () | 31578..32393 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
UMNK88_RS28620 () | 32700..33011 | + | 312 | WP_000338945.1 | hypothetical protein | - |
UMNK88_RS28625 () | 33185..33970 | + | 786 | WP_001151304.1 | Sporulation initiation inhibitor protein Soj | VF |
UMNK88_RS28630 () | 33974..35155 | + | 1182 | WP_001207227.1 | ParB/RepB/Spo0J family partition protein | - |
UMNK88_RS28635 () | 35204..35476 | + | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
UMNK88_RS28640 () | 35529..36164 | - | 636 | WP_000074431.1 | N-6 DNA methylase | - |
UMNK88_RS34165 () | 36256..36399 | - | 144 | WP_000939033.1 | hypothetical protein | - |
UMNK88_RS28645 () | 36726..37103 | + | 378 | WP_001125904.1 | hypothetical protein | - |
UMNK88_RS34540 () | 37096..37377 | + | 282 | WP_000044823.1 | hypothetical protein | - |
UMNK88_RS28655 () | 37352..38026 | + | 675 | WP_000344149.1 | hypothetical protein | - |
UMNK88_RS28660 () | 38094..38525 | + | 432 | WP_001326170.1 | hypothetical protein | - |
UMNK88_RS28665 () | 38531..38842 | + | 312 | WP_001447539.1 | hypothetical protein | - |
UMNK88_RS28670 () | 38851..39351 | + | 501 | WP_000647188.1 | hypothetical protein | - |
UMNK88_RS28675 () | 39355..40782 | + | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
UMNK88_RS28680 () | 40782..41438 | + | 657 | WP_000268552.1 | hypothetical protein | - |
UMNK88_RS28685 () | 41494..42111 | + | 618 | WP_000464630.1 | hypothetical protein | - |
UMNK88_RS28695 () | 42323..42622 | + | 300 | WP_001326171.1 | hypothetical protein | - |
UMNK88_RS28700 () | 42713..43201 | - | 489 | WP_000467110.1 | hypothetical protein | - |
UMNK88_RS28705 () | 43216..45408 | - | 2193 | WP_000366823.1 | DNA topoisomerase 3 | - |
UMNK88_RS28710 () | 45408..45641 | - | 234 | WP_001191890.1 | hypothetical protein | - |
UMNK88_RS28715 () | 45623..46240 | - | 618 | WP_001249395.1 | hypothetical protein | - |
UMNK88_RS29430 () | 46408..49380 | + | 2973 | WP_001326173.1 | hypothetical protein | Relaxase |
UMNK88_RS28725 () | 49377..51242 | + | 1866 | WP_000178857.1 | conjugative transfer system coupling protein TraD | - |
UMNK88_RS28730 () | 51253..51837 | + | 585 | WP_000332868.1 | hypothetical protein | - |
UMNK88_RS28735 () | 51794..52423 | + | 630 | WP_000743449.1 | DUF4400 domain-containing protein | - |
UMNK88_RS28740 () | 52433..52879 | + | 447 | WP_000122507.1 | hypothetical protein | - |
UMNK88_RS28745 () | 52889..53266 | + | 378 | WP_000869297.1 | hypothetical protein | - |
UMNK88_RS28750 () | 53266..53928 | + | 663 | WP_001231464.1 | hypothetical protein | - |
UMNK88_RS34545 () | 54109..54252 | + | 144 | WP_001275801.1 | hypothetical protein | - |
UMNK88_RS28755 () | 54252..54629 | + | 378 | WP_001326174.1 | hypothetical protein | - |
UMNK88_RS28760 () | 54774..55055 | + | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
UMNK88_RS28765 () | 55052..55678 | + | 627 | WP_001049717.1 | hypothetical protein | - |
UMNK88_RS28770 () | 55662..56579 | + | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
UMNK88_RS28775 () | 56579..57892 | + | 1314 | WP_024131605.1 | conjugal transfer protein TraB | - |
UMNK88_RS28780 () | 57889..58467 | + | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
UMNK88_RS28785 () | 58471..58863 | + | 393 | WP_000479535.1 | hypothetical protein | - |
UMNK88_RS28790 () | 59144..60399 | + | 1256 | Protein_84 | IS1380 family transposase ISEcp1 | Transposase |
UMNK88_RS28800 () | 60723..61868 | + | 1146 | WP_000976514.1 | Beta-lactamase | ARG |
UMNK88_RS28805 () | 61962..62495 | + | 534 | WP_001221666.1 | lipocalin family protein | - |
UMNK88_RS28810 () | 62492..62809 | - | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
UMNK88_RS28815 () | 63537..69023 | + | 5487 | WP_000606835.1 | DUF4165 domain-containing protein | - |
UMNK88_RS28820 () | 69172..69879 | + | 708 | WP_015674844.1 | DsbC family protein | - |
UMNK88_RS28825 () | 69876..72323 | + | 2448 | WP_000637384.1 | type IV secretion system protein TraC | - |
UMNK88_RS28830 () | 72338..72655 | + | 318 | WP_000351984.1 | hypothetical protein | - |
UMNK88_RS28835 () | 72652..73182 | + | 531 | WP_001010740.1 | S26 family signal peptidase | - |
UMNK88_RS28840 () | 73145..74410 | + | 1266 | WP_001447719.1 | conjugal transfer protein TraW | - |
UMNK88_RS28845 () | 74407..75078 | + | 672 | WP_000575345.1 | EAL domain-containing protein | - |
UMNK88_RS28850 () | 75075..76082 | + | 1008 | WP_000983282.1 | TraU family protein | - |
UMNK88_RS28855 () | 76186..78993 | + | 2808 | WP_001447718.1 | conjugal transfer mating pair stabilization protein TraN | - |
UMNK88_RS28860 () | 79032..79892 | - | 861 | WP_000709517.1 | hypothetical protein | - |
UMNK88_RS28865 () | 80015..80656 | - | 642 | WP_000796664.1 | hypothetical protein | - |
UMNK88_RS28870 () | 80951..81271 | + | 321 | WP_000547566.1 | hypothetical protein | - |
UMNK88_RS28875 () | 81575..81760 | + | 186 | WP_001186917.1 | hypothetical protein | - |
UMNK88_RS28880 () | 81980..82948 | + | 969 | WP_000085160.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
UMNK88_RS28885 () | 82959..83867 | + | 909 | WP_000739139.1 | hypothetical protein | - |
UMNK88_RS28890 () | 83928..84458 | + | 531 | WP_000987165.1 | single-stranded DNA-binding protein | - |
UMNK88_RS28895 () | 84553..85542 | + | 990 | WP_001282585.1 | phage recombination protein Bet | - |
UMNK88_RS28900 () | 85605..86615 | + | 1011 | WP_000706865.1 | YqaJ viral recombinase family protein | - |
UMNK88_RS28905 () | 86815..88092 | + | 1278 | WP_000170087.1 | DUF3150 domain-containing protein | - |
UMNK88_RS28910 () | 88177..89973 | + | 1797 | WP_000039319.1 | VWA domain-containing protein | - |
UMNK88_RS32030 () | 90035..90370 | + | 336 | WP_001447572.1 | hypothetical protein | - |
UMNK88_RS28915 () | 90635..91174 | + | 540 | WP_000018872.1 | hypothetical protein | - |
UMNK88_RS28920 () | 91265..91765 | + | 501 | WP_000793769.1 | hypothetical protein | - |
UMNK88_RS28925 () | 91839..92723 | + | 885 | WP_000477209.1 | hypothetical protein | - |
UMNK88_RS28930 () | 92789..93013 | + | 225 | WP_001102700.1 | 2Fe-2S ferredoxin-like protein | - |
UMNK88_RS28935 () | 93075..93464 | + | 390 | WP_000026577.1 | hypothetical protein | - |
UMNK88_RS32955 () | 93454..93906 | + | 453 | WP_001176699.1 | hypothetical protein | - |
UMNK88_RS34170 () | 93984..94226 | - | 243 | WP_002210529.1 | hypothetical protein | - |
UMNK88_RS28950 () | 94244..94435 | + | 192 | WP_000651508.1 | hypothetical protein | - |
UMNK88_RS28955 () | 94480..94857 | + | 378 | WP_001337696.1 | hypothetical protein | - |
UMNK88_RS28960 () | 95049..95393 | + | 345 | WP_000209093.1 | hypothetical protein | - |
UMNK88_RS28965 () | 95471..95773 | + | 303 | WP_000410925.1 | hypothetical protein | - |
UMNK88_RS28970 () | 95851..97476 | + | 1626 | WP_000201432.1 | DNA cytosine methyltransferase | - |
UMNK88_RS28975 () | 97537..97968 | + | 432 | WP_000687894.1 | hypothetical protein | - |
UMNK88_RS28980 () | 98042..98596 | + | 555 | WP_001093867.1 | hypothetical protein | - |
UMNK88_RS28985 () | 98829..99215 | + | 387 | WP_000042274.1 | hypothetical protein | - |
UMNK88_RS28990 () | 99303..101756 | + | 2454 | WP_001187969.1 | phosphoadenosine phosphosulfate reductase | - |
UMNK88_RS28995 () | 101958..102161 | + | 204 | WP_000050847.1 | hypothetical protein | - |
UMNK88_RS29000 () | 102233..102838 | + | 606 | WP_000071870.1 | 5'-deoxynucleotidase | - |
UMNK88_RS29005 () | 102831..103100 | + | 270 | WP_000184110.1 | hypothetical protein | - |
UMNK88_RS29010 () | 103114..103332 | + | 219 | WP_000260293.1 | hypothetical protein | - |
UMNK88_RS29015 () | 103406..103963 | + | 558 | WP_000064432.1 | hypothetical protein | - |
UMNK88_RS29020 () | 104038..104889 | + | 852 | WP_000595210.1 | hypothetical protein | - |
UMNK88_RS29025 () | 105348..105734 | + | 387 | WP_001077336.1 | hypothetical protein | - |
UMNK88_RS29030 () | 105912..107639 | + | 1728 | WP_000122922.1 | toprim domain-containing protein | - |
UMNK88_RS29035 () | 107626..107904 | + | 279 | WP_000268337.1 | hypothetical protein | - |
UMNK88_RS29040 () | 107977..108198 | + | 222 | WP_000714163.1 | hypothetical protein | - |
UMNK88_RS29045 () | 108380..109384 | - | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
UMNK88_RS29050 () | 109463..112435 | - | 2973 | WP_001138073.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
UMNK88_RS29055 () | 112438..112995 | - | 558 | WP_001162012.1 | Tn3 family transposase TnpR_TnAs2 | Transposase |
UMNK88_RS29065 () | 113301..114314 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
UMNK88_RS29070 () | 114460..115218 | + | 759 | WP_024250748.1 | Streptomycin 3''-adenylyltransferase | ARG |
UMNK88_RS32040 () | 115327..115572 | + | 246 | WP_032492013.1 | DUF1010 domain-containing protein | - |
UMNK88_RS29075 () | 115591..115929 | + | 339 | WP_011977801.1 | integrase | - |
UMNK88_RS29080 () | 116219..117478 | + | 1260 | WP_012300772.1 | Bicyclomycin resistance protein | ARG |
UMNK88_RS29085 () | 117571..118362 | + | 792 | WP_001261740.1 | Streptomycin 3''-adenylyltransferase | ARG |
UMNK88_RS29090 () | 118486..118833 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
UMNK88_RS29095 () | 118827..119666 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
UMNK88_RS29100 () | 119794..120294 | + | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
UMNK88_RS29105 () | 120829..121611 | - | 783 | WP_001163403.1 | IS21 family transposase IS1326 | Transposase |
UMNK88_RS29110 () | 121601..123124 | - | 1524 | WP_001324342.1 | IS21 family transposase IS1326 | Transposase |
UMNK88_RS29115 () | 123247..124791 | + | 1545 | WP_000287615.1 | IS3 family transposase IS1353 | Transposase |
UMNK88_RS29120 () | 124842..125702 | - | 861 | WP_000344784.1 | TniB family NTP-binding protein | - |
UMNK88_RS29125 () | 125705..126139 | - | 435 | Protein_151 | Mu transposase C-terminal domain-containing protein | - |
UMNK88_RS29135 () | 126193..126896 | - | 704 | Protein_152 | IS6 family transposase IS26 | Transposase |
UMNK88_RS29140 () | 127106..128095 | - | 990 | WP_001276635.1 | putative signaling protein | VF |
UMNK88_RS29145 () | 128092..128328 | - | 237 | WP_001087810.1 | broad-spectrum mercury transporter MerE | - |
UMNK88_RS29150 () | 128325..128690 | - | 366 | WP_000995361.1 | mercury resistance co-regulator MerD | - |
UMNK88_RS29155 () | 128802..129440 | - | 639 | WP_000761850.1 | organomercurial lyase MerB | - |
UMNK88_RS29160 () | 129455..131140 | - | 1686 | WP_000149288.1 | mercury(II) reductase | - |
UMNK88_RS29165 () | 131212..131487 | - | 276 | WP_000732290.1 | mercury resistance system periplasmic binding protein MerP | - |
UMNK88_RS29170 () | 131503..131853 | - | 351 | WP_001294666.1 | mercuric transport protein MerT | - |
UMNK88_RS29175 () | 131925..132359 | + | 435 | WP_000414383.1 | IS607 family transposase ISChh1 | Transposase |
UMNK88_RS29180 () | 132459..133463 | + | 1005 | WP_000427623.1 | IS110 family transposase IS4321R | Transposase |
UMNK88_RS34275 () | 133740..133859 | + | 120 | Protein_162 | permease | - |
UMNK88_RS34280 () | 133869..133985 | + | 117 | WP_000338626.1 | hypothetical protein | - |
UMNK88_RS29185 () | 134106..134480 | + | 375 | WP_000868820.1 | hypothetical protein | - |
UMNK88_RS29190 () | 134594..135319 | + | 726 | WP_000988731.1 | hypothetical protein | - |
UMNK88_RS29195 () | 135452..139705 | + | 4254 | WP_001257735.1 | RHS repeat protein | - |
UMNK88_RS29200 () | 139677..140117 | + | 441 | WP_001326394.1 | hypothetical protein | - |
UMNK88_RS34290 () | 140288..140740 | + | 453 | Protein_168 | hypothetical protein | - |
UMNK88_RS29210 () | 140756..141358 | - | 603 | WP_000278322.1 | hypothetical protein | - |
UMNK88_RS29215 () | 141628..141909 | + | 282 | WP_000575657.1 | hypothetical protein | - |
UMNK88_RS29225 () | 142208..142744 | + | 537 | WP_000949433.1 | hypothetical protein | - |
UMNK88_RS29230 () | 142747..143757 | + | 1011 | WP_000543934.1 | IS91 family transposase ISWz1 | Transposase |
UMNK88_RS29235 () | 143762..144631 | + | 870 | WP_000997323.1 | 3'-5' exonuclease | - |
UMNK88_RS29240 () | 144628..145119 | + | 492 | WP_000139717.1 | hypothetical protein | - |
UMNK88_RS29245 () | 145446..146321 | + | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
UMNK88_RS29250 () | 146483..147523 | + | 1041 | WP_000101568.1 | DNA-binding protein | - |
UMNK88_RS29260 () | 147810..149321 | + | 1512 | WP_000811656.1 | ATP-dependent helicase | - |
UMNK88_RS29265 () | 149432..150472 | + | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
UMNK88_RS29270 () | 150474..151907 | + | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
UMNK88_RS29275 () | 151920..155534 | + | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
UMNK88_RS29280 () | 155572..155934 | - | 363 | WP_000683483.1 | hypothetical protein | - |
UMNK88_RS29285 () | 156651..156923 | + | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
UMNK88_RS29290 () | 156923..157456 | + | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
UMNK88_RS29295 () | 157467..158075 | + | 609 | WP_000891157.1 | hypothetical protein | - |
UMNK88_RS29300 () | 158072..158623 | + | 552 | WP_001020646.1 | hypothetical protein | - |
UMNK88_RS29305 () | 158683..159102 | - | 420 | WP_000651490.1 | H-NS histone family protein | - |
UMNK88_RS29310 () | 159104..159397 | - | 294 | WP_000919078.1 | hypothetical protein | - |
UMNK88_RS29315 () | 159414..160397 | - | 984 | WP_000077458.1 | ParM/StbA family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
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