MGE detailed information
MGE type: Conjugative plasmid MGE length: 65549 bp
Accession: NC_017643 Location: 1..65549 Organism: Escherichia coli UMNK88 Replicon: plasmid pUMNK88_Hly
Accession: NC_017643 Location: 1..65549 Organism: Escherichia coli UMNK88 Replicon: plasmid pUMNK88_Hly
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UMNK88_RS28030 () | 825..1172 | - | 348 | WP_000624618.1 | IS66 family transposase ISCro1 | Transposase |
| UMNK88_RS32905 () | 1172..1823 | - | 652 | Protein_2 | transposase | - |
| UMNK88_RS28040 () | 1943..2218 | + | 276 | WP_000503145.1 | hypothetical protein | - |
| UMNK88_RS33600 () | 2300..2458 | + | 159 | Protein_4 | type I toxin-antitoxin system Hok family toxin | - |
| UMNK88_RS28045 () | 3073..3573 | + | 501 | WP_000117637.1 | antirestriction protein ArdA | - |
| UMNK88_RS34535 () | 3625..3978 | - | 354 | Protein_6 | hypothetical protein | - |
| UMNK88_RS28055 () | 4244..4486 | + | 243 | WP_000540594.1 | hypothetical protein | - |
| UMNK88_RS28060 () | 4600..4857 | + | 258 | WP_000174705.1 | hypothetical protein | - |
| UMNK88_RS28065 () | 4912..5548 | + | 637 | Protein_9 | DUF4942 domain-containing protein | - |
| UMNK88_RS33605 () | 5593..5763 | - | 171 | WP_071881852.1 | helix-turn-helix domain-containing protein | - |
| UMNK88_RS28070 () | 6380..6694 | - | 315 | WP_000741300.1 | hypothetical protein | - |
| UMNK88_RS28075 () | 6964..7299 | + | 336 | WP_000045231.1 | mobilization protein | - |
| UMNK88_RS28080 () | 7305..9317 | + | 2013 | WP_000635641.1 | Protein TraI | Relaxase |
| UMNK88_RS28085 () | 9421..9624 | + | 204 | WP_001261052.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| UMNK88_RS28090 () | 9621..9995 | + | 375 | WP_000604346.1 | PIN domain-containing protein | Toxin Detail |
| UMNK88_RS28095 () | 10177..10734 | - | 558 | WP_000735639.1 | Attachment invasion locus protein | VF |
| UMNK88_RS29575 () | 10818..11127 | - | 310 | Protein_17 | transposase | - |
| UMNK88_RS28115 () | 11542..12084 | - | 543 | WP_001005723.1 | hypothetical protein | - |
| UMNK88_RS28120 () | 12178..15403 | - | 3226 | Protein_19 | Intimin | VF |
| UMNK88_RS28125 () | 15512..16012 | - | 501 | WP_015675113.1 | Phospholipase D | VF |
| UMNK88_RS28130 () | 16042..18126 | - | 2085 | WP_106372088.1 | conjugal transfer protein TrbC | - |
| UMNK88_RS29410 () | 18248..19168 | - | 921 | WP_001099721.1 | hypothetical protein | - |
| UMNK88_RS28140 () | 19178..20551 | - | 1374 | WP_000020269.1 | hypothetical protein | - |
| UMNK88_RS28145 () | 20839..20976 | - | 138 | WP_000078925.1 | Hok/Gef family protein | - |
| UMNK88_RS28150 () | 21335..21988 | - | 654 | WP_000090954.1 | hypothetical protein | - |
| UMNK88_RS28155 () | 22027..22383 | - | 357 | WP_000839608.1 | hypothetical protein | - |
| UMNK88_RS28160 () | 22643..22843 | - | 201 | WP_001041139.1 | hemolysin expression modulator Hha | - |
| UMNK88_RS28165 () | 23001..23420 | - | 420 | WP_000221970.1 | hypothetical protein | - |
| UMNK88_RS28170 () | 23581..25731 | - | 2151 | WP_000221823.1 | DotA/TraY family protein | - |
| UMNK88_RS28175 () | 25813..26157 | - | 345 | WP_000061675.1 | hypothetical protein | - |
| UMNK88_RS28180 () | 26159..26659 | - | 501 | WP_148277502.1 | hypothetical protein | - |
| UMNK88_RS28185 () | 26724..27254 | - | 531 | WP_000678126.1 | conjugal transfer protein TraX | - |
| UMNK88_RS28190 () | 27251..28471 | - | 1221 | WP_001039317.1 | conjugal transfer protein TraW | - |
| UMNK88_RS28195 () | 28495..31551 | - | 3057 | WP_000906733.1 | hypothetical protein | VF |
| UMNK88_RS29415 () | 31555..32166 | - | 612 | WP_000955158.1 | hypothetical protein | - |
| UMNK88_RS28205 () | 32160..32429 | - | 270 | WP_001024052.1 | hypothetical protein | - |
| UMNK88_RS29420 () | 32485..32892 | - | 408 | WP_001059622.1 | hypothetical protein | - |
| UMNK88_RS28215 () | 32924..33454 | - | 531 | WP_024250743.1 | conjugal transfer protein TraQ | - |
| UMNK88_RS29425 () | 33459..34169 | - | 711 | WP_000842735.1 | conjugal transfer protein TraP | - |
| UMNK88_RS28225 () | 34170..35363 | - | 1194 | WP_000963756.1 | hypothetical protein | VF |
| UMNK88_RS28230 () | 35366..36409 | - | 1044 | WP_000199394.1 | hypothetical protein | - |
| UMNK88_RS28235 () | 36406..37077 | - | 672 | WP_000753819.1 | hypothetical protein | VF |
| UMNK88_RS28240 () | 37097..37576 | - | 480 | WP_000853820.1 | hypothetical protein | - |
| UMNK88_RS28245 () | 37591..41034 | - | 3444 | WP_000189054.1 | hypothetical protein | - |
| UMNK88_RS33610 () | 41052..41312 | - | 261 | WP_000796496.1 | IcmT/TraK family protein | - |
| UMNK88_RS28255 () | 41305..42477 | - | 1173 | WP_000380306.1 | Twitching mobility protein | VF |
| UMNK88_RS28260 () | 42483..43265 | - | 783 | WP_000872512.1 | hypothetical protein | VF |
| UMNK88_RS28265 () | 43262..43687 | - | 426 | WP_000776569.1 | DotD/TraH family lipoprotein | - |
| UMNK88_RS28270 () | 43714..44184 | - | 471 | WP_000269367.1 | hypothetical protein | VF |
| UMNK88_RS28275 () | 44184..44681 | - | 498 | WP_000559317.1 | hypothetical protein | - |
| UMNK88_RS28280 () | 44691..44933 | - | 243 | WP_001245734.1 | hypothetical protein | - |
| UMNK88_RS28285 () | 45227..45913 | - | 687 | WP_000206190.1 | DUF2913 family protein | - |
| UMNK88_RS28290 () | 46010..46513 | - | 504 | WP_000206175.1 | transcription termination factor NusG | - |
| UMNK88_RS28295 () | 47272..48303 | + | 1032 | WP_000907883.1 | replication initiation protein | - |
| UMNK88_RS28300 () | 49165..49434 | + | 270 | WP_000079928.1 | hypothetical protein | - |
| UMNK88_RS28305 () | 50489..51001 | + | 513 | WP_015675120.1 | Hemolysin-activating lysine-acyltransferase HlyC | VF |
| UMNK88_RS28310 () | 51013..54087 | + | 3075 | WP_001142368.1 | Hemolysin, plasmid | VF |
| UMNK88_RS28315 () | 54159..56282 | + | 2124 | WP_000376538.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| UMNK88_RS28320 () | 56301..57737 | + | 1437 | WP_000860465.1 | Hemolysin secretion protein D, plasmid | VF |
| UMNK88_RS33620 () | 57815..58150 | + | 336 | Protein_60 | IS3 family transposase | - |
| UMNK88_RS31980 () | 58149..58304 | + | 156 | Protein_61 | transposase domain-containing protein | - |
| UMNK88_RS28325 () | 58809..60017 | + | 1209 | WP_000343732.1 | IS256 family transposase IS1414 | Transposase |
| UMNK88_RS28330 () | 60092..60445 | - | 354 | WP_001259260.1 | hypothetical protein | - |
| UMNK88_RS28335 () | 60791..61771 | + | 981 | WP_001218108.1 | plasmid segregation protein ParM | - |
| UMNK88_RS28340 () | 61774..62196 | + | 423 | WP_000774834.1 | plasmid partitioning/stability family protein | - |
| UMNK88_RS32935 () | 62200..62511 | + | 312 | WP_077633986.1 | hypothetical protein | - |
| UMNK88_RS28345 () | 62587..63270 | + | 684 | WP_000085951.1 | DNA methylase | - |
| UMNK88_RS28355 () | 63380..63940 | + | 561 | WP_122989243.1 | DUF1380 family protein | - |
| UMNK88_RS28360 () | 63986..64757 | + | 772 | Protein_69 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|