MGE detailed information
MGE type: Conjugative plasmid MGE length: 90868 bp
Accession: NC_017642 Location: 1..90868 Organism: Escherichia coli UMNK88 Replicon: plasmid pUMNK88_91
Accession: NC_017642 Location: 1..90868 Organism: Escherichia coli UMNK88 Replicon: plasmid pUMNK88_91
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UMNK88_RS26995 () | 455..1486 | + | 1032 | WP_000907861.1 | replication initiation protein | - |
| UMNK88_RS27000 () | 2555..3064 | - | 510 | WP_000045394.1 | hypothetical protein | - |
| UMNK88_RS27005 () | 3120..3722 | - | 603 | WP_000517692.1 | hypothetical protein | - |
| UMNK88_RS27010 () | 4076..5422 | + | 1347 | WP_001132033.1 | hypothetical protein | - |
| UMNK88_RS27015 () | 5701..7580 | + | 1880 | Protein_4 | colicin | - |
| UMNK88_RS27025 () | 7602..7937 | - | 336 | WP_001080734.1 | colicin 1A immunity protein | - |
| UMNK88_RS27030 () | 8066..8413 | + | 348 | WP_000142451.1 | hypothetical protein | - |
| UMNK88_RS27035 () | 8433..9023 | - | 591 | WP_000194576.1 | hypothetical protein | - |
| UMNK88_RS27040 () | 9023..9280 | - | 258 | WP_000343088.1 | hypothetical protein | - |
| UMNK88_RS27045 () | 9937..10221 | + | 285 | WP_001331078.1 | hypothetical protein | - |
| UMNK88_RS27050 () | 10214..10903 | + | 690 | WP_000796232.1 | hypothetical protein | - |
| UMNK88_RS27055 () | 10900..11688 | + | 789 | WP_000016498.1 | site-specific integrase | - |
| UMNK88_RS27060 () | 11868..12512 | + | 645 | WP_001144036.1 | ParA family protein | - |
| UMNK88_RS27065 () | 12599..12907 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| UMNK88_RS27070 () | 13321..14301 | + | 981 | WP_000688519.1 | plasmid segregation protein ParM | - |
| UMNK88_RS27075 () | 14294..14710 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| UMNK88_RS27080 () | 14712..15986 | - | 1275 | WP_000457517.1 | Y-family DNA polymerase | - |
| UMNK88_RS27085 () | 15986..16423 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| UMNK88_RS27090 () | 16420..16668 | - | 249 | WP_000618111.1 | DinI-like family protein | - |
| UMNK88_RS27095 () | 17086..17883 | + | 798 | WP_024250728.1 | DUF1281 domain-containing protein | - |
| UMNK88_RS32785 () | 17880..18191 | + | 312 | WP_014640311.1 | hypothetical protein | - |
| UMNK88_RS27105 () | 18267..18950 | + | 684 | WP_000086149.1 | DNA methylase | - |
| UMNK88_RS27110 () | 18951..19172 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| UMNK88_RS27115 () | 19186..19620 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| UMNK88_RS34060 () | 19666..20442 | + | 777 | WP_001005044.1 | hypothetical protein | - |
| UMNK88_RS27130 () | 20983..21285 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| UMNK88_RS33540 () | 21309..21377 | + | 69 | Protein_26 | antirestriction protein | - |
| UMNK88_RS27135 () | 21424..21846 | + | 423 | WP_000271729.1 | DUF1380 family protein | - |
| UMNK88_RS27140 () | 21843..22034 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| UMNK88_RS34505 () | 22367..22435 | - | 69 | Protein_29 | pilus protein | - |
| UMNK88_RS27145 () | 22804..23331 | + | 528 | WP_001276127.1 | single-stranded DNA-binding protein | - |
| UMNK88_RS27150 () | 23389..23622 | + | 234 | WP_000006012.1 | DUF905 family protein | - |
| UMNK88_RS27155 () | 23681..25639 | + | 1959 | WP_001145458.1 | ParB/RepB/Spo0J family partition protein | - |
| UMNK88_RS27160 () | 25694..26128 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| UMNK88_RS27165 () | 26125..26844 | + | 720 | WP_001276260.1 | plasmid SOS inhibition protein A | - |
| UMNK88_RS27170 () | 26974..28149 | + | 1176 | WP_000942656.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| UMNK88_RS27180 () | 28597..29097 | + | 501 | WP_000117627.1 | antirestriction protein ArdA | - |
| UMNK88_RS27185 () | 29829..30263 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| UMNK88_RS27190 () | 30357..30623 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| UMNK88_RS27195 () | 30688..31629 | + | 942 | WP_000038340.1 | Recombination-promoting nuclease RpnA | VF |
| UMNK88_RS27200 () | 31691..31897 | + | 207 | WP_000150315.1 | hypothetical protein | VF |
| UMNK88_RS27205 () | 31928..32179 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| UMNK88_RS34510 () | 32213..32410 | - | 198 | WP_001161115.1 | hypothetical protein | - |
| UMNK88_RS27215 () | 32759..33607 | + | 849 | WP_001077019.1 | DUF4942 domain-containing protein | - |
| UMNK88_RS27220 () | 33693..34028 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| UMNK88_RS27225 () | 34262..34594 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| UMNK88_RS27230 () | 34605..37304 | + | 2700 | WP_001474686.1 | Protein TraI | Relaxase |
| UMNK88_RS27235 () | 37341..39632 | - | 2292 | WP_001289269.1 | TrbC | - |
| UMNK88_RS27240 () | 39625..40695 | - | 1071 | WP_000151576.1 | IncI1-type conjugal transfer protein TrbB | - |
| UMNK88_RS27245 () | 40714..41922 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 42102..42164 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 42102..42164 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 42102..42164 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 42102..42164 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| UMNK88_RS27250 () | 42214..42366 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| UMNK88_RS27255 () | 42438..42689 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| - () | 43076..43127 | - | 52 | NuclAT_1 | - | - |
| - () | 43076..43127 | - | 52 | NuclAT_1 | - | - |
| - () | 43076..43127 | - | 52 | NuclAT_1 | - | - |
| - () | 43076..43127 | - | 52 | NuclAT_1 | - | - |
| UMNK88_RS27260 () | 43422..44072 | + | 651 | WP_000993956.1 | IS66 family transposase IS679 | Transposase |
| UMNK88_RS27265 () | 44072..44419 | + | 348 | WP_000624600.1 | IS66 family transposase IS679 | Transposase |
| UMNK88_RS27270 () | 44439..46010 | + | 1572 | WP_000381458.1 | IS66 family transposase IS679 | Transposase |
| UMNK88_RS34515 () | 46326..46502 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| UMNK88_RS27285 () | 46894..47103 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| UMNK88_RS27290 () | 47175..47837 | - | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| UMNK88_RS27295 () | 47908..50076 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| UMNK88_RS27300 () | 50173..50757 | - | 585 | WP_001037985.1 | IncI1-type conjugal transfer protein TraX | - |
| UMNK88_RS27305 () | 50786..51988 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| UMNK88_RS27310 () | 51955..52569 | - | 615 | WP_000337400.1 | IncI1-type conjugal transfer protein TraV | - |
| UMNK88_RS27315 () | 52569..55613 | - | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| UMNK88_RS27320 () | 55703..56503 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| UMNK88_RS27325 () | 56487..56675 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| UMNK88_RS27330 () | 56739..57143 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| UMNK88_RS27335 () | 57194..57721 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| UMNK88_RS27340 () | 57721..58425 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| UMNK88_RS27345 () | 58425..59714 | - | 1290 | WP_001271998.1 | conjugal transfer protein TraO | - |
| UMNK88_RS27350 () | 59717..60700 | - | 984 | WP_001191878.1 | hypothetical protein | VF |
| UMNK88_RS27355 () | 60711..61403 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| UMNK88_RS27360 () | 61400..61747 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| UMNK88_RS27365 () | 61765..65532 | - | 3768 | WP_001141534.1 | DNA primase | - |
| UMNK88_RS27370 () | 65622..66173 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| UMNK88_RS31785 () | 66188..66478 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| UMNK88_RS27375 () | 66475..67623 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| UMNK88_RS27380 () | 67620..68438 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| UMNK88_RS27385 () | 68435..68800 | - | 366 | Protein_77 | hypothetical protein | VF |
| UMNK88_RS27400 () | 70601..71185 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| UMNK88_RS27405 () | 71245..72447 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| UMNK88_RS27410 () | 72533..73357 | - | 825 | WP_001238931.1 | conjugal transfer protein TraE | - |
| UMNK88_RS27415 () | 73508..74662 | - | 1155 | WP_001139955.1 | integrase | - |
| UMNK88_RS27425 () | 74974..76308 | - | 1335 | WP_024250730.1 | hypothetical protein | VF |
| UMNK88_RS27430 () | 76308..76964 | - | 657 | WP_001193549.1 | hypothetical protein | VF |
| UMNK88_RS27435 () | 76949..77509 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| UMNK88_RS27440 () | 77519..78133 | - | 615 | WP_000908226.1 | hypothetical protein | VF |
| UMNK88_RS27445 () | 78150..79235 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| UMNK88_RS27450 () | 79248..80801 | - | 1554 | WP_000362206.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| UMNK88_RS27455 () | 80812..81264 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| UMNK88_RS27460 () | 81251..82546 | - | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| UMNK88_RS27465 () | 82539..84221 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| UMNK88_RS27470 () | 84235..84672 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| UMNK88_RS27475 () | 84672..85739 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| UMNK88_RS27485 () | 86711..87085 | - | 375 | WP_001136188.1 | PilI type IV pilus biogenesis protein | - |
| UMNK88_RS27490 () | 87247..87798 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| UMNK88_RS27495 () | 87971..88654 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| UMNK88_RS27500 () | 88907..89440 | - | 534 | WP_001306770.1 | transcription termination factor NusG | - |
| UMNK88_RS27505 () | 89882..90169 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| UMNK88_RS27510 () | 90087..90350 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|