MGE detailed information
MGE type: Prophage MGE length: 68400 bp
Accession: NC_017641 Location: 1899408..1967807 Organism: Escherichia coli UMNK88 Replicon: chromosome
Accession: NC_017641 Location: 1899408..1967807 Organism: Escherichia coli UMNK88 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UMNK88_RS09685 () | 1894965..1895483 | + | 519 | WP_001024745.1 | 2-oxo-tetronate isomerase | - |
| UMNK88_RS09690 () | 1895528..1897573 | - | 2046 | WP_001459755.1 | peptidyl-dipeptidase Dcp | - |
| UMNK88_RS09695 () | 1897710..1898456 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| UMNK88_RS09700 () | 1898545..1899231 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| UMNK88_RS09705 () | 1899408..1899611 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| UMNK88_RS09710 () | 1899647..1901107 | - | 1461 | WP_000527813.1 | mannitol dehydrogenase family protein | - |
| UMNK88_RS09715 () | 1901196..1902479 | - | 1284 | Protein_1860 | MHS family MFS transporter YdfJ | - |
| UMNK88_RS33820 () | 1903081..1903194 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| UMNK88_RS09725 () | 1903263..1903496 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| UMNK88_RS09730 () | 1903813..1904403 | + | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| UMNK88_RS09735 () | 1904501..1905076 | - | 576 | WP_000885595.1 | tail fiber assembly protein | - |
| UMNK88_RS30385 () | 1905076..1908183 | - | 3108 | WP_000279160.1 | prophage tail fiber N-terminal domain-containing protein | - |
| UMNK88_RS09755 () | 1908248..1908847 | - | 600 | WP_001233110.1 | hypothetical protein | VF |
| UMNK88_RS09760 () | 1908915..1912394 | - | 3480 | WP_000515295.1 | host specificity protein J | - |
| UMNK88_RS09765 () | 1912455..1913087 | - | 633 | WP_071881833.1 | tail assembly protein | - |
| UMNK88_RS09770 () | 1913024..1913767 | - | 744 | WP_000140768.1 | C40 family peptidase | - |
| UMNK88_RS09775 () | 1913772..1914470 | - | 699 | WP_001152612.1 | phage minor tail protein L | - |
| UMNK88_RS09780 () | 1914470..1914799 | - | 330 | WP_000847342.1 | phage tail protein | - |
| UMNK88_RS09785 () | 1914796..1917357 | - | 2562 | WP_000840341.1 | phage tail tape measure protein | - |
| UMNK88_RS09790 () | 1917350..1917784 | - | 435 | WP_000459471.1 | phage tail assembly protein T | - |
| UMNK88_RS09795 () | 1917766..1918188 | - | 423 | WP_000479164.1 | phage minor tail protein G | - |
| UMNK88_RS09800 () | 1918204..1918944 | - | 741 | WP_015675224.1 | phage tail protein | - |
| UMNK88_RS09805 () | 1918952..1919347 | - | 396 | WP_000683142.1 | phage minor tail U family protein | - |
| UMNK88_RS09810 () | 1919344..1919922 | - | 579 | WP_000985129.1 | phage tail protein | - |
| UMNK88_RS09815 () | 1919934..1920287 | - | 354 | WP_000752963.1 | head-tail joining protein | - |
| UMNK88_RS09820 () | 1920299..1920697 | - | 399 | WP_000158861.1 | DNA-packaging protein FI | - |
| UMNK88_RS09825 () | 1920739..1921764 | - | 1026 | WP_000063274.1 | major capsid protein | - |
| UMNK88_RS09830 () | 1921820..1922152 | - | 333 | WP_001299443.1 | head decoration protein | - |
| UMNK88_RS09835 () | 1922162..1923481 | - | 1320 | WP_000123321.1 | S49 family peptidase | - |
| UMNK88_RS09840 () | 1923462..1925063 | - | 1602 | WP_015675225.1 | phage portal protein | - |
| UMNK88_RS09845 () | 1925060..1925266 | - | 207 | WP_000198153.1 | gpW family protein | - |
| UMNK88_RS09850 () | 1925263..1927188 | - | 1926 | WP_001027314.1 | phage terminase large subunit family protein | - |
| UMNK88_RS09855 () | 1927163..1927708 | - | 546 | WP_000453576.1 | DNA-packaging protein | - |
| UMNK88_RS09870 () | 1928097..1928330 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| UMNK88_RS09875 () | 1928388..1928798 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| UMNK88_RS09880 () | 1928950..1929123 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| UMNK88_RS33830 () | 1929295..1929450 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| UMNK88_RS33835 () | 1929530..1929595 | - | 66 | WP_122134696.1 | hypothetical protein | - |
| UMNK88_RS30390 () | 1929598..1929786 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| UMNK88_RS09890 () | 1929797..1930009 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| UMNK88_RS09895 () | 1930373..1930870 | - | 498 | WP_001071766.1 | DUF2514 domain-containing protein | - |
| UMNK88_RS09900 () | 1930867..1931400 | - | 534 | WP_001092971.1 | lysozyme | - |
| UMNK88_RS09905 () | 1931397..1931708 | - | 312 | WP_000189915.1 | YdfR family protein | - |
| UMNK88_RS09910 () | 1931713..1931928 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| UMNK88_RS09915 () | 1932682..1932897 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| UMNK88_RS09920 () | 1933198..1933410 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| UMNK88_RS33840 () | 1933465..1933554 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| UMNK88_RS09925 () | 1933832..1934584 | - | 753 | WP_001047136.1 | antitermination protein | - |
| UMNK88_RS09930 () | 1934598..1935647 | - | 1050 | WP_001424248.1 | DUF968 domain-containing protein | - |
| UMNK88_RS30395 () | 1935649..1935927 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| UMNK88_RS09935 () | 1935994..1936245 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| UMNK88_RS09940 () | 1936462..1936617 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| UMNK88_RS09945 () | 1936689..1936976 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| UMNK88_RS09950 () | 1936976..1937215 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| UMNK88_RS30400 () | 1937240..1937545 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| UMNK88_RS09955 () | 1937748..1938080 | + | 333 | WP_001301033.1 | protein FlxA | - |
| UMNK88_RS09960 () | 1938517..1939830 | - | 1314 | WP_000589009.1 | ISNCY family transposase ISCARN112 | Transposase |
| UMNK88_RS34365 () | 1940599..1940886 | - | 288 | Protein_1911 | hypothetical protein | - |
| UMNK88_RS09975 () | 1941497..1941853 | - | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| UMNK88_RS09980 () | 1941850..1942272 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| UMNK88_RS09985 () | 1942313..1943278 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| UMNK88_RS09990 () | 1943259..1943780 | - | 522 | WP_000705358.1 | hypothetical protein | - |
| UMNK88_RS09995 () | 1943764..1943994 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| UMNK88_RS10000 () | 1944078..1944485 | + | 408 | WP_000448565.1 | DNA-binding transcriptional dual regulator DicA | - |
| UMNK88_RS10005 () | 1944652..1944807 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| UMNK88_RS10010 () | 1944967..1945185 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| UMNK88_RS10015 () | 1945745..1945933 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| UMNK88_RS10020 () | 1945930..1946121 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| UMNK88_RS32300 () | 1946214..1947188 | + | 975 | Protein_1922 | exonuclease | - |
| UMNK88_RS33150 () | 1947095..1948456 | + | 1362 | WP_148277496.1 | exonuclease | - |
| UMNK88_RS33850 () | 1948453..1948683 | + | 231 | WP_015675228.1 | 3'-5' exoribonuclease | - |
| UMNK88_RS10030 () | 1948756..1949007 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| UMNK88_RS10035 () | 1949042..1950322 | + | 1281 | WP_000877005.1 | hypothetical protein ; Integrase | Integrase |
| UMNK88_RS32315 () | 1950324..1950452 | - | 129 | WP_015953164.1 | hypothetical protein | - |
| UMNK88_RS10040 () | 1950510..1951529 | - | 1020 | WP_000836059.1 | Zn-dependent oxidoreductase | - |
| UMNK88_RS10045 () | 1951541..1952755 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| UMNK88_RS10050 () | 1952961..1953287 | - | 327 | WP_001295395.1 | YnfA family protein | - |
| UMNK88_RS10055 () | 1953422..1953763 | + | 342 | WP_000705209.1 | DUF1283 family protein | - |
| UMNK88_RS10060 () | 1953798..1954358 | + | 561 | WP_001138583.1 | spermidine N1-acetyltransferase | - |
| UMNK88_RS10065 () | 1954361..1955071 | - | 711 | WP_072104773.1 | YnfC family lipoprotein | - |
| UMNK88_RS10070 () | 1955179..1955484 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| UMNK88_RS10075 () | 1955683..1957095 | + | 1413 | Protein_1935 | molybdopterin-dependent oxidoreductase | - |
| UMNK88_RS10085 () | 1957972..1958961 | - | 990 | WP_024250695.1 | hypothetical protein | - |
| UMNK88_RS10090 () | 1959043..1959534 | - | 492 | WP_000971494.1 | hypothetical protein | - |
| UMNK88_RS29335 () | 1959800..1960558 | - | 759 | WP_000107258.1 | KilA-N domain-containing protein | - |
| UMNK88_RS10100 () | 1961158..1961625 | - | 468 | WP_001018629.1 | hypothetical protein | - |
| UMNK88_RS10105 () | 1961981..1963603 | - | 1623 | WP_015675229.1 | Chaperone protein DnaJ ; Integrase | Integrase |
| UMNK88_RS10110 () | 1963586..1964695 | + | 1110 | WP_000248657.1 | molybdopterin-dependent oxidoreductase | - |
| UMNK88_RS10115 () | 1964756..1967179 | + | 2424 | WP_074151088.1 | dimethyl sulfoxide reductase subunit A | - |
| UMNK88_RS10120 () | 1967190..1967807 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| UMNK88_RS10125 () | 1967809..1968663 | + | 855 | WP_000526477.1 | dimethyl sulfoxide reductase anchor subunit | - |
| UMNK88_RS10130 () | 1968706..1969320 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| UMNK88_RS10135 () | 1969479..1970771 | + | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| UMNK88_RS10140 () | 1970724..1971419 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| UMNK88_RS10145 () | 1971544..1972764 | - | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|