MGE detailed information
MGE type: Conjugative plasmid MGE length: 81475 bp
Accession: NC_017640 Location: 1..81475 Organism: Escherichia coli UMNK88 Replicon: plasmid pUMNK88_Ent
Accession: NC_017640 Location: 1..81475 Organism: Escherichia coli UMNK88 Replicon: plasmid pUMNK88_Ent
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UMNK88_RS27520 () | 3..980 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| UMNK88_RS27525 () | 1265..2005 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| UMNK88_RS27535 () | 2649..2899 | - | 251 | Protein_2 | type II toxin-antitoxin system ParD family antitoxin | - |
| UMNK88_RS33550 () | 3422..3531 | - | 110 | Protein_3 | IS5/IS1182 family transposase | - |
| UMNK88_RS31820 () | 3982..4317 | + | 336 | Protein_4 | toxin-activating lysine-acyltransferase | - |
| UMNK88_RS27540 () | 4702..5196 | + | 495 | WP_000377907.1 | Transcriptional repressor MprA | VF |
| UMNK88_RS32815 () | 5543..6666 | - | 1124 | Protein_6 | IS3 family transposase IS3F | Transposase |
| UMNK88_RS33555 () | 6841..7554 | + | 714 | WP_001423761.1 | IS3 family transposase ISKpn38 | Transposase |
| UMNK88_RS32835 () | 7682..8445 | - | 764 | Protein_8 | IS3 family transposase IS2 | Transposase |
| UMNK88_RS31840 () | 8521..8703 | + | 183 | Protein_9 | transposase | - |
| UMNK88_RS27565 () | 9000..10534 | + | 1535 | Protein_10 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| UMNK88_RS31845 () | 10650..10928 | - | 279 | Protein_11 | transposase | - |
| UMNK88_RS27570 () | 10955..12568 | - | 1614 | WP_000080200.1 | IS66 family transposase ISEc23 | Transposase |
| UMNK88_RS27575 () | 12599..12949 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| UMNK88_RS27580 () | 12946..13371 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| UMNK88_RS32840 () | 13457..14300 | - | 844 | Protein_15 | IS3 family transposase | - |
| UMNK88_RS27600 () | 14688..14903 | - | 216 | WP_000739296.1 | heat-stable enterotoxin ST-II | - |
| UMNK88_RS27605 () | 15380..15959 | - | 580 | Protein_17 | IS256 family transposase | - |
| UMNK88_RS32845 () | 15985..16628 | + | 644 | Protein_18 | DDE-type integrase/transposase/recombinase | - |
| UMNK88_RS27615 () | 16720..17691 | - | 972 | WP_001078349.1 | IS481 family transposase ISEc18 | Transposase |
| UMNK88_RS27620 () | 17903..18616 | - | 714 | WP_001424997.1 | hypothetical protein | - |
| UMNK88_RS31860 () | 19483..20259 | + | 777 | WP_042634421.1 | Heat-labile enterotoxin A chain | VF |
| UMNK88_RS27635 () | 20256..20630 | + | 375 | WP_015675362.1 | Heat-labile enterotoxin B chain | VF |
| UMNK88_RS31865 () | 20978..21374 | + | 397 | Protein_23 | ATP-binding protein | - |
| UMNK88_RS27645 () | 21488..22656 | + | 1169 | WP_085959723.1 | IS3 family transposase ISLad1 | Transposase |
| - () | 22733..22794 | + | 62 | NuclAT_1 | - | - |
| - () | 22733..22794 | + | 62 | NuclAT_1 | - | - |
| - () | 22733..22794 | + | 62 | NuclAT_1 | - | - |
| - () | 22733..22794 | + | 62 | NuclAT_1 | - | - |
| UMNK88_RS27655 () | 23090..23401 | + | 312 | WP_000765906.1 | hypothetical protein | - |
| UMNK88_RS34520 () | 23582..23668 | - | 87 | Protein_26 | endonuclease | - |
| UMNK88_RS27665 () | 23912..24127 | - | 216 | WP_032166857.1 | hypothetical protein | - |
| UMNK88_RS27670 () | 24263..24823 | - | 561 | WP_000139309.1 | fertility inhibition protein FinO | - |
| UMNK88_RS32850 () | 24878..25621 | - | 744 | Protein_29 | conjugal transfer pilus acetylase TraX | - |
| UMNK88_RS27685 () | 25641..30911 | - | 5271 | WP_000986925.1 | Multifunctional conjugation protein TraI | Relaxase |
| UMNK88_RS27690 () | 30911..33106 | - | 2196 | Protein_31 | type IV conjugative transfer system coupling protein TraD | - |
| UMNK88_RS27695 () | 33427..34119 | - | 693 | WP_000351852.1 | hypothetical protein | - |
| UMNK88_RS27700 () | 34334..34645 | + | 312 | WP_000522221.1 | heavy metal-binding domain-containing protein | - |
| UMNK88_RS27705 () | 34648..37467 | - | 2820 | WP_001007033.1 | conjugal transfer mating pair stabilization protein TraG | - |
| UMNK88_RS27710 () | 37464..38838 | - | 1375 | Protein_35 | conjugal transfer protein TraH | - |
| UMNK88_RS27715 () | 38825..39217 | - | 393 | WP_000126336.1 | F-type conjugal transfer protein TrbF | - |
| UMNK88_RS32855 () | 39171..40019 | - | 849 | WP_000052615.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| UMNK88_RS27725 () | 40006..40290 | - | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| UMNK88_RS27730 () | 40409..40756 | - | 348 | WP_001287893.1 | conjugal transfer protein TrbA | - |
| UMNK88_RS27735 () | 40772..41515 | - | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| UMNK88_RS27740 () | 41508..41765 | - | 258 | WP_000864325.1 | conjugal transfer protein TrbE | - |
| UMNK88_RS27745 () | 41792..43600 | - | 1809 | WP_000821823.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| UMNK88_RS27750 () | 43597..44235 | - | 639 | WP_001104248.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| UMNK88_RS27755 () | 44263..44715 | - | 453 | WP_000069427.1 | hypothetical protein | - |
| UMNK88_RS27760 () | 44745..45206 | - | 462 | WP_000277845.1 | hypothetical protein | - |
| UMNK88_RS27765 () | 45232..46224 | - | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| UMNK88_RS27770 () | 46221..46853 | - | 633 | WP_001203747.1 | type-F conjugative transfer system protein TraW | - |
| UMNK88_RS27775 () | 46850..47236 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| UMNK88_RS27780 () | 47233..49859 | - | 2627 | Protein_49 | type IV secretion system protein TraC | - |
| UMNK88_RS31875 () | 50021..50242 | - | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| UMNK88_RS27785 () | 50377..50892 | - | 516 | WP_000809841.1 | type IV conjugative transfer system lipoprotein TraV | - |
| UMNK88_RS27790 () | 50889..51141 | - | 253 | Protein_52 | conjugal transfer protein TrbG | - |
| UMNK88_RS27795 () | 51153..51350 | - | 198 | WP_001423674.1 | conjugal transfer protein TrbD | - |
| UMNK88_RS33565 () | 51337..51927 | - | 591 | Protein_54 | conjugal transfer protein TraP | - |
| UMNK88_RS27805 () | 51917..53344 | - | 1428 | WP_000146630.1 | conjugal transfer protein TraB | - |
| UMNK88_RS27810 () | 53344..54048 | - | 705 | WP_158414288.1 | type-F conjugative transfer system secretin TraK | - |
| UMNK88_RS27815 () | 54059..54625 | - | 567 | WP_000399785.1 | type IV conjugative transfer system protein TraE | - |
| UMNK88_RS27820 () | 54647..54958 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| UMNK88_RS27825 () | 54973..55332 | - | 360 | WP_000340272.1 | type IV conjugative transfer system pilin TraA | - |
| UMNK88_RS27830 () | 55366..55593 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| UMNK88_RS27835 () | 55687..56373 | - | 687 | WP_000332484.1 | PAS domain-containing protein | - |
| UMNK88_RS27840 () | 56564..56946 | - | 383 | Protein_62 | relaxosome protein TraM | - |
| UMNK88_RS27845 () | 57282..57872 | + | 591 | WP_000252680.1 | hypothetical protein | VF |
| UMNK88_RS27850 () | 58169..58990 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| UMNK88_RS27855 () | 59110..59397 | - | 288 | WP_000107537.1 | hypothetical protein | - |
| UMNK88_RS27865 () | 60316..60474 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 60518..60742 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 60518..60742 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 60518..60742 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 60518..60742 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| UMNK88_RS27875 () | 60754..61473 | - | 720 | WP_001276278.1 | plasmid SOS inhibition protein A | - |
| UMNK88_RS31890 () | 61470..61903 | - | 434 | Protein_68 | conjugation system SOS inhibitor PsiB | - |
| UMNK88_RS27885 () | 61958..63916 | - | 1959 | WP_000117205.1 | ParB/RepB/Spo0J family partition protein | - |
| UMNK88_RS27890 () | 63980..64213 | - | 234 | WP_000005985.1 | DUF905 family protein | - |
| UMNK88_RS27895 () | 64275..64814 | - | 540 | WP_000290811.1 | single-stranded DNA-binding protein | - |
| UMNK88_RS34525 () | 64840..65046 | - | 207 | WP_000275848.1 | hypothetical protein | - |
| UMNK88_RS34560 () | 65116..65542 | + | 427 | Protein_73 | hypothetical protein | - |
| UMNK88_RS27910 () | 65628..66191 | - | 564 | WP_001423687.1 | class I SAM-dependent methyltransferase | - |
| UMNK88_RS27915 () | 66238..67599 | - | 1362 | WP_000170717.1 | DUF3560 domain-containing protein | - |
| UMNK88_RS27920 () | 67651..67881 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| UMNK88_RS27930 () | 68868..69059 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| UMNK88_RS27935 () | 69059..69478 | - | 420 | WP_000271716.1 | DUF1380 family protein | - |
| UMNK88_RS27940 () | 69525..69827 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| UMNK88_RS34530 () | 70368..71147 | - | 780 | WP_024250736.1 | hypothetical protein | - |
| UMNK88_RS27955 () | 71198..71632 | - | 435 | WP_000274480.1 | DUF1380 family protein | - |
| UMNK88_RS27960 () | 71646..71867 | - | 222 | WP_001104880.1 | hypothetical protein | - |
| UMNK88_RS27965 () | 71868..72521 | - | 654 | WP_000769465.1 | DNA methylase | - |
| UMNK88_RS27970 () | 73101..74801 | + | 1701 | WP_000125555.1 | group II intron reverse transcriptase/maturase | - |
| UMNK88_RS32880 () | 75031..75342 | - | 312 | WP_001309256.1 | hypothetical protein | - |
| UMNK88_RS34155 () | 75406..75765 | - | 360 | WP_001385002.1 | DUF1281 domain-containing protein | - |
| UMNK88_RS33595 () | 75772..75915 | - | 144 | WP_000270807.1 | DUF1281 domain-containing protein | - |
| UMNK88_RS32895 () | 76082..76859 | - | 778 | Protein_88 | hypothetical protein | - |
| UMNK88_RS27995 () | 77093..78055 | - | 963 | WP_000756327.1 | ParB/RepB/Spo0J family partition protein | - |
| UMNK88_RS28000 () | 78052..79257 | - | 1206 | WP_000817634.1 | Plasmid partition protein A | VF |
| UMNK88_RS28005 () | 79631..79843 | + | 213 | WP_000402944.1 | hypothetical protein | - |
| UMNK88_RS28010 () | 80016..80267 | + | 252 | WP_001132895.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| UMNK88_RS28015 () | 80264..80551 | + | 288 | WP_001270417.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| UMNK88_RS31930 () | 80550..80798 | + | 249 | Protein_94 | integrase core domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|