MGE detailed information
MGE type: Mobilizable plasmid MGE length: 81883 bp
Accession: NC_017639 Location: 1..81883 Organism: Escherichia coli UMNK88 Replicon: plasmid pUMNK88_K88
Accession: NC_017639 Location: 1..81883 Organism: Escherichia coli UMNK88 Replicon: plasmid pUMNK88_K88
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UMNK88_RS26455 () | 1694..2023 | + | 330 | WP_000493288.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| UMNK88_RS26460 () | 2004..2285 | + | 282 | WP_000780224.1 | helix-turn-helix transcriptional regulator | - |
| UMNK88_RS26465 () | 2430..2795 | - | 366 | WP_000124140.1 | hypothetical protein | - |
| UMNK88_RS31595 () | 2949..3035 | - | 87 | WP_077633983.1 | hypothetical protein | - |
| UMNK88_RS26470 () | 3068..3765 | - | 698 | Protein_5 | IS1-like element IS1A family transposase | - |
| UMNK88_RS26475 () | 4116..4427 | + | 312 | WP_044538108.1 | Major pilu subunit operon regulatory protein PapB | VF |
| UMNK88_RS26480 () | 4424..4969 | + | 546 | WP_000708866.1 | hypothetical protein | VF |
| UMNK88_RS26485 () | 4981..7416 | + | 2436 | WP_000761063.1 | Outer membrane usher protein YraJ | VF |
| UMNK88_RS26490 () | 7409..8185 | + | 777 | WP_000044493.1 | Chaperone protein FaeE | VF |
| UMNK88_RS26495 () | 8220..8711 | + | 492 | WP_000753462.1 | hypothetical protein | VF |
| UMNK88_RS26500 () | 8948..9796 | + | 849 | WP_000751752.1 | K88 fimbrial protein AC | VF |
| UMNK88_RS26505 () | 9967..10764 | + | 798 | WP_000704731.1 | hypothetical protein | VF |
| UMNK88_RS26510 () | 10794..11558 | + | 765 | WP_000758129.1 | hypothetical protein | VF |
| UMNK88_RS26515 () | 11575..12348 | + | 774 | WP_000932014.1 | hypothetical protein | VF |
| UMNK88_RS26520 () | 12498..12776 | - | 279 | Protein_15 | ISKra4 family transposase | - |
| UMNK88_RS26525 () | 12819..13292 | - | 474 | Protein_16 | IS3 family transposase ISEc25 | Transposase |
| UMNK88_RS26530 () | 13382..14779 | - | 1398 | Protein_17 | group II intron reverse transcriptase/maturase | - |
| UMNK88_RS31605 () | 14938..15988 | - | 1051 | Protein_18 | IS4 family transposase IS186B | Transposase |
| UMNK88_RS32720 () | 16032..16178 | - | 147 | WP_001384906.1 | hypothetical protein | - |
| UMNK88_RS32725 () | 16851..17590 | - | 740 | Protein_20 | IS3 family transposase ISEc25 | Transposase |
| UMNK88_RS26565 () | 17651..18151 | + | 501 | Protein_21 | transposase | - |
| UMNK88_RS31610 () | 18202..19164 | + | 963 | Protein_22 | IS66 family transposase ISEc43 | Transposase |
| UMNK88_RS34465 () | 19188..19557 | + | 370 | Protein_23 | resolvase | - |
| UMNK88_RS26580 () | 19833..21311 | - | 1479 | WP_000119410.1 | anion permease | - |
| UMNK88_RS26585 () | 21359..23011 | - | 1653 | WP_001423959.1 | NAD-dependent malic enzyme | - |
| UMNK88_RS26590 () | 23094..24191 | - | 1098 | WP_001384897.1 | choloylglycine hydrolase family protein | - |
| UMNK88_RS26595 () | 24234..24452 | - | 219 | WP_001292878.1 | hypothetical protein | - |
| UMNK88_RS26600 () | 24571..25410 | + | 840 | WP_042634625.1 | Diacetyl reductase [(S)-acetoin forming] | VF |
| UMNK88_RS34470 () | 25782..25943 | - | 162 | WP_001384894.1 | hypothetical protein | - |
| UMNK88_RS26605 () | 26016..26663 | + | 648 | WP_000993920.1 | IS66 family transposase IS679 | Transposase |
| UMNK88_RS26610 () | 26663..26974 | + | 312 | WP_000624624.1 | IS66 family transposase ISCro1 | Transposase |
| UMNK88_RS26615 () | 27572..28468 | + | 897 | Protein_32 | reverse transcriptase N-terminal domain-containing protein | - |
| UMNK88_RS26620 () | 28524..28742 | + | 219 | Protein_33 | IS1 family transposase IS1A | Transposase |
| UMNK88_RS26625 () | 28828..29247 | + | 420 | WP_000422708.1 | IS66 family transposase ISEc23 | Transposase |
| UMNK88_RS26630 () | 29244..29594 | + | 351 | WP_000624709.1 | IS66 family transposase ISEc47 | Transposase |
| UMNK88_RS32735 () | 29625..31236 | + | 1612 | Protein_36 | IS66 family transposase ISEc43 | Transposase |
| UMNK88_RS26645 () | 31323..31976 | + | 654 | WP_000616803.1 | CPBP family intramembrane metalloprotease | - |
| UMNK88_RS34055 () | 32069..32326 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| UMNK88_RS26655 () | 32259..32660 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| UMNK88_RS26660 () | 32944..34716 | + | 1773 | WP_001262766.1 | DUF262 domain-containing protein | - |
| UMNK88_RS26670 () | 35192..35716 | - | 525 | Protein_41 | IS21 family transposase IS21 | Transposase |
| UMNK88_RS26675 () | 35716..36888 | - | 1173 | WP_000952340.1 | IS21 family transposase IS21 | Transposase |
| UMNK88_RS32740 () | 36989..37817 | - | 829 | Protein_43 | transposase | - |
| UMNK88_RS31635 () | 37864..38091 | + | 228 | Protein_44 | transposase | - |
| UMNK88_RS26690 () | 38381..38651 | - | 271 | Protein_45 | IS256 family transposase ISSoEn2 | Transposase |
| UMNK88_RS26695 () | 38778..39851 | - | 1074 | WP_000395522.1 | carbohydrate porin | - |
| UMNK88_RS26710 () | 41194..41526 | - | 333 | Protein_48 | carbohydrate porin | - |
| UMNK88_RS26715 () | 42126..43559 | - | 1434 | WP_024183910.1 | glycoside hydrolase family 32 protein | - |
| UMNK88_RS26720 () | 43556..44833 | - | 1278 | WP_001083371.1 | MFS transporter | - |
| UMNK88_RS26725 () | 44896..47022 | - | 2127 | WP_000624161.1 | alpha-galactosidase | - |
| UMNK88_RS26730 () | 47116..48126 | - | 1011 | WP_000053334.1 | substrate-binding domain-containing protein | - |
| UMNK88_RS34555 () | 48248..48421 | - | 174 | Protein_53 | IS3 family transposase | - |
| UMNK88_RS26735 () | 48532..48744 | - | 213 | WP_000970005.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| UMNK88_RS26740 () | 48741..48944 | - | 204 | WP_000567252.1 | hypothetical protein | Antitoxin Detail |
| UMNK88_RS32745 () | 49000..50537 | + | 1538 | Protein_56 | IS3 family transposase | - |
| UMNK88_RS26760 () | 50648..51271 | + | 624 | WP_000912989.1 | potassium channel family protein | - |
| UMNK88_RS26765 () | 51697..52403 | - | 707 | Protein_58 | IS1 family transposase | - |
| UMNK88_RS31655 () | 52461..53000 | + | 540 | Protein_59 | F1 capsule-anchoring protein | VF |
| UMNK88_RS26770 () | 53132..53611 | + | 480 | WP_000721505.1 | hypothetical protein | - |
| UMNK88_RS26775 () | 53639..54118 | + | 480 | WP_000737093.1 | F1 capsule antigen | VF |
| UMNK88_RS34475 () | 54492..54668 | + | 177 | WP_001385113.1 | F1 capsule antigen | VF |
| UMNK88_RS26780 () | 54800..55390 | - | 591 | WP_000194557.1 | hypothetical protein | - |
| UMNK88_RS26785 () | 55387..55647 | - | 261 | WP_000343089.1 | hypothetical protein | - |
| UMNK88_RS26790 () | 56217..56567 | + | 351 | WP_000493379.1 | hypothetical protein | - |
| UMNK88_RS26795 () | 56611..57291 | + | 681 | Protein_66 | hypothetical protein | - |
| UMNK88_RS26800 () | 57365..58087 | + | 723 | WP_071881846.1 | site-specific integrase | - |
| UMNK88_RS26805 () | 58225..58500 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| UMNK88_RS26810 () | 58494..59138 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
| UMNK88_RS26815 () | 59367..60338 | + | 972 | WP_001103690.1 | hypothetical protein | - |
| UMNK88_RS26820 () | 60343..60735 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| UMNK88_RS26825 () | 60740..62011 | - | 1272 | WP_000457520.1 | Y-family DNA polymerase | - |
| UMNK88_RS26830 () | 62011..62388 | - | 378 | WP_000457136.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| UMNK88_RS26835 () | 62444..62692 | - | 249 | WP_000618111.1 | DinI-like family protein | - |
| UMNK88_RS26840 () | 63110..63514 | + | 405 | Protein_75 | DUF1281 domain-containing protein | - |
| UMNK88_RS26845 () | 63513..63878 | + | 366 | Protein_76 | hypothetical protein | - |
| UMNK88_RS26850 () | 63933..64367 | + | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| UMNK88_RS26855 () | 64364..65125 | + | 762 | Protein_78 | plasmid SOS inhibition protein A | - |
| - () | 65094..65291 | + | 198 | NuclAT_0 | - | - |
| - () | 65094..65291 | + | 198 | NuclAT_0 | - | - |
| - () | 65094..65291 | + | 198 | NuclAT_0 | - | - |
| - () | 65094..65291 | + | 198 | NuclAT_0 | - | - |
| UMNK88_RS26860 () | 65357..65518 | + | 162 | WP_000775238.1 | type I toxin-antitoxin system Hok family toxin | - |
| UMNK88_RS34220 () | 65878..66090 | - | 213 | WP_162136584.1 | hypothetical protein | - |
| UMNK88_RS34480 () | 66215..66421 | + | 207 | WP_000547959.1 | hypothetical protein | - |
| UMNK88_RS26870 () | 66446..66733 | + | 288 | WP_000107526.1 | hypothetical protein | - |
| UMNK88_RS26875 () | 66853..67674 | + | 822 | WP_001234483.1 | DUF945 domain-containing protein | - |
| UMNK88_RS26880 () | 67970..68572 | - | 603 | WP_001323326.1 | hypothetical protein | VF |
| UMNK88_RS26885 () | 68903..69286 | + | 384 | WP_001151562.1 | relaxosome protein TraM | - |
| UMNK88_RS26890 () | 69480..70166 | + | 687 | WP_000332489.1 | PAS domain-containing protein | - |
| UMNK88_RS26895 () | 70260..70487 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| UMNK88_RS26900 () | 70521..70880 | + | 360 | WP_001098988.1 | type IV conjugative transfer system pilin TraA | - |
| UMNK88_RS26905 () | 70895..71206 | + | 312 | WP_000012100.1 | type IV conjugative transfer system protein TraL | - |
| UMNK88_RS26910 () | 71228..71794 | + | 567 | WP_000399776.1 | type IV conjugative transfer system protein TraE | - |
| UMNK88_RS26915 () | 71781..72511 | + | 731 | Protein_91 | type-F conjugative transfer system secretin TraK | - |
| UMNK88_RS26920 () | 72511..73938 | + | 1428 | WP_000146669.1 | conjugal transfer protein TraB | - |
| UMNK88_RS34485 () | 73928..74263 | + | 336 | WP_015675409.1 | conjugal transfer protein TraP | - |
| UMNK88_RS34490 () | 74280..74526 | + | 247 | Protein_94 | traP family protein | - |
| UMNK88_RS26930 () | 74513..74833 | + | 321 | WP_001057283.1 | conjugal transfer protein TrbD | - |
| UMNK88_RS26935 () | 74830..75345 | + | 516 | WP_000724018.1 | type IV conjugative transfer system lipoprotein TraV | - |
| UMNK88_RS31685 () | 75480..75701 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| UMNK88_RS33525 () | 75863..77326 | + | 1464 | Protein_98 | TraC family protein | - |
| UMNK88_RS26950 () | 77479..78435 | + | 957 | Protein_99 | conjugal transfer pilus assembly protein TraU | - |
| UMNK88_RS34495 () | 78560..78922 | - | 363 | Protein_100 | Tn3 family transposase TnpA_Tn3 | Transposase |
| UMNK88_RS34500 () | 78929..79302 | - | 374 | Protein_101 | transposase | - |
| UMNK88_RS26965 () | 79391..79786 | + | 396 | Protein_102 | conjugal transfer protein TraD | - |
| UMNK88_RS31695 () | 79785..80570 | + | 786 | Protein_103 | conjugal transfer protein TraI | - |
| UMNK88_RS33530 () | 80569..80721 | - | 153 | Protein_104 | IS3 family transposase | - |
| UMNK88_RS26980 () | 81218..81478 | + | 261 | WP_000078108.1 | replication regulatory protein RepA | - |
| UMNK88_RS26985 () | 81716..81790 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|