MGE detailed information
MGE type: Conjugative plasmid MGE length: 113346 bp
Accession: NC_017627 Location: 1..113346 Organism: Escherichia coli 042 Replicon: plasmid pAA
Accession: NC_017627 Location: 1..113346 Organism: Escherichia coli 042 Replicon: plasmid pAA
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC042_RS29825 () | 13..870 | + | 858 | WP_000130960.1 | incFII family plasmid replication initiator RepA | - |
| EC042_RS26235 () | 1053..1226 | + | 174 | Protein_2 | integrase core domain-containing protein | - |
| EC042_RS26240 () | 1397..2425 | + | 1029 | WP_000869855.1 | class 1 isoprenoid biosynthesis enzyme | - |
| EC042_RS26245 () | 2429..2968 | + | 540 | WP_014639416.1 | isopentenyl-diphosphate Delta-isomerase | - |
| EC042_RS30880 () | 3392..3544 | - | 153 | WP_000565590.1 | hypothetical protein | - |
| EC042_RS30500 () | 3776..4142 | - | 367 | Protein_6 | IS3 family transposase IS629 | Transposase |
| EC042_RS26265 () | 4520..5650 | + | 1131 | WP_000209220.1 | dispersin export ABC transporter permease subunit AatP | - |
| EC042_RS26270 () | 5647..6885 | + | 1239 | WP_001216023.1 | dispersin export ABC transporter outer membrane protein AatA | - |
| EC042_RS26275 () | 6782..7603 | + | 822 | WP_032490785.1 | dispersin export-associated protein AatB | - |
| EC042_RS26280 () | 7596..8225 | + | 630 | WP_000621745.1 | dispersin export ABC transporter ATP-binding protein AatC | - |
| EC042_RS26285 () | 8237..9451 | + | 1215 | WP_014639418.1 | dispersin export-associated protein AatD | - |
| EC042_RS26290 () | 9748..11286 | - | 1539 | Protein_12 | IS66 family transposase ISEc8 | Transposase |
| EC042_RS26295 () | 11336..11683 | - | 348 | WP_000612588.1 | IS66 family transposase ISEc8 | Transposase |
| EC042_RS30645 () | 11680..12060 | - | 381 | WP_001171558.1 | IS66 family transposase ISEc8 | Transposase |
| EC042_RS30510 () | 12221..12373 | + | 153 | WP_144335553.1 | IS3 family transposase ISBope1 | Transposase |
| EC042_RS26310 () | 12612..13418 | - | 807 | WP_000016964.1 | site-specific integrase | - |
| EC042_RS26315 () | 13419..13724 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| EC042_RS26320 () | 13726..13944 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| EC042_RS26325 () | 14466..14725 | + | 260 | Protein_19 | hypothetical protein | - |
| EC042_RS26330 () | 14725..15315 | + | 591 | Protein_20 | hypothetical protein | - |
| EC042_RS26335 () | 15559..16401 | + | 843 | WP_032489528.1 | polysaccharide deacetylase family protein | - |
| EC042_RS27190 () | 16404..17492 | + | 1089 | WP_011666408.1 | putative hexosyltransferase CapU | - |
| EC042_RS26345 () | 17497..18447 | + | 951 | WP_014639423.1 | virulence factor VirK | - |
| EC042_RS26350 () | 18514..18774 | + | 261 | Protein_24 | IS66 family transposase ISEc47 | Transposase |
| EC042_RS26355 () | 18805..19314 | + | 510 | Protein_25 | IS66 family transposase ISEc23 | Transposase |
| EC042_RS26360 () | 19399..20145 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| EC042_RS26380 () | 21543..22394 | + | 852 | Protein_28 | IS3 family transposase ISKpn38 | Transposase |
| EC042_RS26385 () | 22554..22994 | - | 441 | WP_000715633.1 | Protein AggB | VF |
| EC042_RS26390 () | 23011..25536 | - | 2526 | WP_049794100.1 | F1 capsule-anchoring protein | VF |
| EC042_RS29105 () | 25644..26259 | - | 616 | Protein_31 | fimbria/pilus periplasmic chaperone | - |
| EC042_RS26405 () | 27080..27777 | + | 698 | Protein_32 | IS1-like element IS1A family transposase | - |
| EC042_RS26410 () | 28073..31960 | + | 3888 | WP_014639426.1 | Serine protease pet autotransporter | VF |
| EC042_RS26415 () | 32251..33242 | - | 992 | Protein_34 | IS256 family transposase IS1414 | Transposase |
| EC042_RS26425 () | 33296..34509 | + | 1214 | WP_173281274.1 | IS3 family transposase IS629 | Transposase |
| EC042_RS30650 () | 34512..34682 | - | 171 | WP_000343713.1 | IS256 family transposase IS1414 | Transposase |
| EC042_RS26435 () | 34766..35074 | - | 309 | WP_000030202.1 | hypothetical protein | - |
| EC042_RS26440 () | 35161..35805 | - | 645 | WP_001144036.1 | ParA family protein | - |
| EC042_RS30515 () | 35993..36877 | - | 885 | Protein_39 | IS3 family transposase IS911 | Transposase |
| EC042_RS26450 () | 36887..37372 | - | 486 | WP_064717075.1 | IS30 family transposase IS30D | Transposase |
| EC042_RS29845 () | 37440..37697 | - | 258 | Protein_41 | IS3 family transposase IS911 | Transposase |
| EC042_RS29115 () | 37870..38208 | + | 339 | Protein_42 | IS3 family transposase ISKpn38 | Transposase |
| EC042_RS26460 () | 38499..39248 | + | 750 | WP_014639428.1 | Chaperone protein caf1M | VF |
| EC042_RS26465 () | 39652..40134 | + | 483 | WP_014639430.1 | hypothetical protein | VF |
| EC042_RS26470 () | 40269..40966 | - | 698 | Protein_45 | IS1-like element IS1A family transposase | - |
| EC042_RS26480 () | 41080..41877 | - | 798 | WP_000769456.1 | CFA/I fimbrial subunit D | VF |
| EC042_RS30525 () | 42102..42395 | - | 294 | Protein_47 | IS3 family transposase ISEc48 | Transposase |
| EC042_RS29125 () | 42385..42576 | + | 192 | Protein_48 | IS3 family transposase | - |
| EC042_RS30530 () | 42684..43034 | - | 351 | WP_000721278.1 | hypothetical protein | VF |
| EC042_RS26490 () | 43600..44629 | - | 1030 | Protein_50 | IS481 family transposase ISErsp1 | Transposase |
| EC042_RS29130 () | 44758..45945 | - | 1188 | Protein_51 | IS3 family transposase | - |
| EC042_RS26510 () | 46246..46437 | + | 192 | WP_000643554.1 | AggR-activated transcriptional regulator Aar | - |
| EC042_RS26515 () | 46630..46809 | + | 180 | Protein_53 | IS630 family transposase ISSpu2 | Transposase |
| EC042_RS26520 () | 46839..48410 | - | 1572 | WP_000381465.1 | IS66 family transposase ISCro1 | Transposase |
| EC042_RS26525 () | 48430..48777 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| EC042_RS26530 () | 48777..49454 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| EC042_RS30655 () | 49491..49646 | - | 156 | WP_000343734.1 | IS256 family transposase IS1414 | Transposase |
| EC042_RS29140 () | 49801..49935 | - | 135 | Protein_58 | IS66 family insertion sequence element accessory protein TnpB | - |
| EC042_RS26545 () | 50186..50398 | - | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| EC042_RS26550 () | 50530..51090 | - | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| EC042_RS26555 () | 51145..51891 | - | 747 | WP_000205739.1 | conjugal transfer pilus acetylase TraX | - |
| EC042_RS26560 () | 51911..57181 | - | 5271 | WP_000986978.1 | Multifunctional conjugation protein TraI | Relaxase |
| EC042_RS26565 () | 57181..59532 | - | 2352 | WP_000009342.1 | Coupling protein TraD | VF |
| EC042_RS26570 () | 59583..60320 | - | 738 | WP_000199915.1 | hypothetical protein | - |
| EC042_RS26575 () | 60523..61254 | - | 732 | WP_000850429.1 | complement resistance protein TraT | - |
| EC042_RS26580 () | 61286..61789 | - | 504 | WP_000605508.1 | hypothetical protein | - |
| EC042_RS26585 () | 61804..64626 | - | 2823 | WP_001007076.1 | conjugal transfer mating pair stabilization protein TraG | - |
| EC042_RS26590 () | 64623..65996 | - | 1374 | WP_001137365.1 | conjugal transfer protein TraH | - |
| EC042_RS26595 () | 65983..66408 | - | 426 | WP_071821413.1 | F-type conjugal transfer protein TrbF | - |
| EC042_RS26600 () | 66356..66703 | - | 348 | WP_071821414.1 | P-type conjugative transfer protein TrbJ | - |
| EC042_RS26605 () | 66633..67178 | - | 546 | WP_000059820.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| EC042_RS26610 () | 67165..67449 | - | 285 | WP_000623730.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| EC042_RS26615 () | 67576..67914 | - | 339 | WP_001287905.1 | conjugal transfer protein TrbA | - |
| EC042_RS26620 () | 67930..68673 | - | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| EC042_RS26625 () | 68666..68923 | - | 258 | WP_000864329.1 | conjugal transfer protein TrbE | - |
| EC042_RS26630 () | 68950..70800 | - | 1851 | WP_000821864.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| EC042_RS26635 () | 70797..71435 | - | 639 | WP_001080257.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| EC042_RS26640 () | 71444..71749 | - | 306 | WP_000224413.1 | hypothetical protein | - |
| EC042_RS26645 () | 71779..72771 | - | 993 | WP_000830190.1 | conjugal transfer pilus assembly protein TraU | - |
| EC042_RS26650 () | 72768..73400 | - | 633 | WP_001203729.1 | type-F conjugative transfer system protein TraW | - |
| EC042_RS26655 () | 73397..73783 | - | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| EC042_RS26660 () | 73780..76407 | - | 2628 | WP_001064267.1 | type IV secretion system protein TraC | - |
| EC042_RS29150 () | 76567..76788 | - | 222 | WP_001278977.1 | conjugal transfer protein TraR | - |
| EC042_RS26670 () | 76923..77438 | - | 516 | WP_000809883.1 | type IV conjugative transfer system lipoprotein TraV | - |
| EC042_RS26675 () | 77435..77803 | - | 369 | WP_071821415.1 | conjugal transfer protein TrbD | - |
| EC042_RS26680 () | 77742..78323 | - | 582 | WP_071821416.1 | conjugal transfer protein TraP | - |
| EC042_RS26685 () | 78292..79743 | - | 1452 | WP_000146647.1 | conjugal transfer protein TraB | - |
| EC042_RS26690 () | 79743..80447 | - | 705 | WP_110093084.1 | type-F conjugative transfer system secretin TraK | - |
| EC042_RS26695 () | 80458..81024 | - | 567 | WP_000399805.1 | type IV conjugative transfer system protein TraE | - |
| EC042_RS26700 () | 81046..81357 | - | 312 | WP_000012116.1 | type IV conjugative transfer system protein TraL | - |
| EC042_RS26705 () | 81372..81737 | - | 366 | WP_001098991.1 | type IV conjugative transfer system pilin TraA | - |
| EC042_RS26710 () | 81771..81998 | - | 228 | WP_001254383.1 | conjugal transfer relaxosome protein TraY | - |
| EC042_RS26715 () | 82092..82778 | - | 687 | WP_000332487.1 | PAS domain-containing protein | - |
| EC042_RS26720 () | 82972..83355 | - | 384 | WP_001151564.1 | relaxosome protein TraM | - |
| EC042_RS26725 () | 83641..84288 | + | 648 | WP_000614288.1 | hypothetical protein | VF |
| EC042_RS26730 () | 84585..85406 | - | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| EC042_RS26735 () | 85517..85813 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| EC042_RS30890 () | 86156..86425 | + | 270 | WP_000820286.1 | hypothetical protein | - |
| EC042_RS26755 () | 86663..86824 | - | 162 | WP_000775234.1 | type I toxin-antitoxin system Hok family toxin | - |
| - () | 86870..87075 | - | 206 | NuclAT_0 | - | - |
| - () | 86870..87075 | - | 206 | NuclAT_0 | - | - |
| - () | 86870..87075 | - | 206 | NuclAT_0 | - | - |
| - () | 86870..87075 | - | 206 | NuclAT_0 | - | - |
| EC042_RS26765 () | 87032..87346 | - | 315 | WP_000872086.1 | hypothetical protein | - |
| EC042_RS26770 () | 87343..88062 | - | 720 | WP_001276253.1 | plasmid SOS inhibition protein A | - |
| EC042_RS26775 () | 88059..88493 | - | 435 | WP_000845946.1 | conjugation system SOS inhibitor PsiB | - |
| EC042_RS26780 () | 88548..90506 | - | 1959 | WP_001145502.1 | ParB/RepB/Spo0J family partition protein | - |
| EC042_RS26785 () | 90565..90798 | - | 234 | WP_000005971.1 | DUF905 domain-containing protein | - |
| EC042_RS26790 () | 90854..91381 | - | 528 | WP_000290786.1 | single-stranded DNA-binding protein | - |
| EC042_RS30945 () | 91683..92222 | + | 540 | Protein_106 | hypothetical protein | - |
| EC042_RS26800 () | 92308..92871 | - | 564 | WP_014639443.1 | class I SAM-dependent methyltransferase | - |
| EC042_RS26805 () | 92918..94279 | - | 1362 | WP_000170663.1 | DUF3560 domain-containing protein | - |
| EC042_RS26810 () | 94331..94561 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| EC042_RS30660 () | 95073..95321 | + | 249 | WP_001403191.1 | hypothetical protein | - |
| EC042_RS26815 () | 95594..95785 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| EC042_RS26820 () | 95782..96204 | - | 423 | WP_000271740.1 | DUF1380 family protein | - |
| EC042_RS26825 () | 96251..96553 | - | 303 | WP_072126845.1 | antirestriction protein | - |
| EC042_RS30950 () | 97092..97862 | - | 771 | WP_001044394.1 | hypothetical protein | - |
| EC042_RS26835 () | 97907..98341 | - | 435 | WP_000274485.1 | DUF1380 family protein | - |
| EC042_RS26840 () | 98355..98576 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| EC042_RS26845 () | 98577..99260 | - | 684 | WP_000085884.1 | DNA methylase | - |
| EC042_RS29885 () | 99337..99630 | - | 294 | WP_041031844.1 | hypothetical protein | - |
| EC042_RS26855 () | 99778..100740 | + | 963 | WP_000959878.1 | plasmid segregation protein ParM | - |
| EC042_RS26860 () | 100743..101093 | + | 351 | WP_000361382.1 | plasmid partitioning/stability family protein | - |
| EC042_RS29195 () | 101350..101592 | + | 243 | Protein_121 | helix-turn-helix domain-containing protein | - |
| EC042_RS27195 () | 101635..101793 | + | 159 | Protein_122 | integrase core domain-containing protein | - |
| EC042_RS26870 () | 101942..102940 | + | 999 | WP_000756333.1 | ABC transporter substrate-binding protein | - |
| EC042_RS26875 () | 102940..103227 | + | 288 | Protein_124 | iron chelate uptake ABC transporter family permease subunit | - |
| EC042_RS26880 () | 103230..103739 | + | 510 | Protein_125 | Fe(3+) dicitrate transport ATP-binding protein FecE | VF |
| EC042_RS26885 () | 103796..104983 | + | 1188 | WP_162467506.1 | MFS transporter | - |
| EC042_RS26890 () | 105061..105336 | - | 276 | WP_000877663.1 | bacteriocin immunity protein | - |
| EC042_RS26895 () | 105695..105994 | - | 300 | WP_000119542.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| EC042_RS26900 () | 105984..106247 | - | 264 | WP_001089474.1 | hypothetical protein | - |
| EC042_RS30740 () | 106354..106614 | - | 261 | WP_000829589.1 | hypothetical protein | - |
| EC042_RS26910 () | 107317..108174 | - | 858 | WP_000130960.1 | incFII family plasmid replication initiator RepA | - |
| EC042_RS29215 () | 108167..108241 | - | 75 | WP_032241916.1 | RepA leader peptide Tap | - |
| EC042_RS26920 () | 108474..108731 | - | 258 | WP_000083844.1 | replication regulatory protein RepA | - |
| EC042_RS26925 () | 108925..109485 | + | 561 | Protein_134 | IS256 family transposase IS1414 | Transposase |
| EC042_RS26955 () | 112039..112608 | - | 570 | Protein_137 | IS256 family transposase IS1414 | Transposase |
| EC042_RS26960 () | 112802..113059 | + | 258 | WP_000083844.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|