MGE detailed information
MGE type: Prophage MGE length: 56627 bp
Accession: NC_017530 Location: 3097039..3153665 Organism: Pseudomonas putida BIRD-1 Replicon: chromosome
Accession: NC_017530 Location: 3097039..3153665 Organism: Pseudomonas putida BIRD-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PPUBIRD1_RS13835 () | 3092963..3093628 | + | 666 | WP_014591151.1 | SOS response-associated peptidase family protein | - |
| PPUBIRD1_RS13840 () | 3093902..3094159 | - | 258 | WP_019438535.1 | hypothetical protein | - |
| PPUBIRD1_RS13850 () | 3095034..3095507 | + | 474 | WP_014591152.1 | OsmC family protein | - |
| PPUBIRD1_RS13855 () | 3096191..3096733 | - | 543 | WP_019438537.1 | AAA family ATPase | - |
| PPUBIRD1_RS27205 () | 3097006..3097362 | + | 357 | Protein_2741 | hypothetical protein ; Integrase | Integrase |
| PPUBIRD1_RS13865 () | 3097803..3098396 | + | 594 | WP_041166985.1 | hypothetical protein | - |
| PPUBIRD1_RS13870 () | 3098661..3099533 | - | 873 | WP_041166986.1 | LysR family transcriptional regulator | - |
| PPUBIRD1_RS13875 () | 3099658..3100371 | + | 714 | WP_148236331.1 | AzlC family ABC transporter permease | - |
| PPUBIRD1_RS13880 () | 3100361..3100681 | + | 321 | WP_014591156.1 | AzlD domain-containing protein | - |
| PPUBIRD1_RS13885 () | 3100715..3101356 | + | 642 | WP_014591157.1 | LysE family translocator | - |
| PPUBIRD1_RS13890 () | 3101698..3102051 | - | 354 | WP_021782005.1 | hypothetical protein | - |
| PPUBIRD1_RS13895 () | 3102174..3103727 | + | 1554 | WP_014591158.1 | hypothetical protein ; Integrase | Integrase |
| PPUBIRD1_RS13900 () | 3103727..3104620 | + | 894 | WP_014591159.1 | ParB N-terminal domain-containing protein | - |
| PPUBIRD1_RS13905 () | 3104617..3105522 | + | 906 | WP_041166987.1 | ParB N-terminal domain-containing protein | - |
| PPUBIRD1_RS26360 () | 3105644..3106045 | - | 402 | WP_158306293.1 | HNH endonuclease family protein | - |
| PPUBIRD1_RS13915 () | 3106252..3106461 | - | 210 | WP_014591161.1 | hypothetical protein | - |
| PPUBIRD1_RS13920 () | 3106455..3107729 | - | 1275 | WP_041166988.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| PPUBIRD1_RS13925 () | 3107719..3108147 | - | 429 | WP_041166989.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PPUBIRD1_RS13930 () | 3108250..3108969 | + | 720 | WP_041166990.1 | SOS response-associated peptidase family protein | - |
| PPUBIRD1_RS13935 () | 3109167..3109379 | - | 213 | WP_041166991.1 | hypothetical protein | - |
| PPUBIRD1_RS13940 () | 3109459..3110253 | - | 795 | WP_014591163.1 | DNA adenine methylase | - |
| PPUBIRD1_RS26370 () | 3110432..3110938 | - | 507 | WP_080557798.1 | DUF2514 domain-containing protein | - |
| PPUBIRD1_RS13950 () | 3110935..3111384 | - | 450 | WP_014591165.1 | hypothetical protein | - |
| PPUBIRD1_RS13955 () | 3111481..3112239 | - | 759 | WP_014591166.1 | hypothetical protein | - |
| PPUBIRD1_RS26375 () | 3113658..3114026 | - | 369 | Protein_2761 | hypothetical protein | - |
| PPUBIRD1_RS13965 () | 3114070..3114552 | - | 483 | WP_041166992.1 | hypothetical protein | - |
| PPUBIRD1_RS13970 () | 3114555..3117659 | - | 3105 | WP_041166993.1 | hypothetical protein | - |
| PPUBIRD1_RS13975 () | 3117631..3118032 | - | 402 | WP_014591170.1 | hypothetical protein | - |
| PPUBIRD1_RS13980 () | 3118032..3118517 | - | 486 | WP_014591171.1 | DUF1833 family protein | - |
| PPUBIRD1_RS13985 () | 3118514..3121939 | - | 3426 | WP_041166994.1 | phage tail tape measure protein | - |
| PPUBIRD1_RS25895 () | 3122022..3122957 | - | 936 | WP_049870130.1 | hypothetical protein | - |
| PPUBIRD1_RS13995 () | 3123002..3123241 | - | 240 | WP_193384014.1 | hypothetical protein | - |
| PPUBIRD1_RS14000 () | 3123247..3123576 | - | 330 | WP_014591173.1 | hypothetical protein | - |
| PPUBIRD1_RS14005 () | 3123617..3124120 | - | 504 | WP_014591174.1 | hypothetical protein | - |
| PPUBIRD1_RS14010 () | 3124176..3124562 | - | 387 | WP_014591175.1 | DUF3168 domain-containing protein | - |
| PPUBIRD1_RS14015 () | 3124555..3125055 | - | 501 | WP_014591176.1 | HK97 gp10 family phage protein | - |
| PPUBIRD1_RS14020 () | 3125059..3125238 | - | 180 | WP_014591177.1 | hypothetical protein | - |
| PPUBIRD1_RS26380 () | 3125247..3125573 | - | 327 | WP_080557799.1 | phage head closure protein | - |
| PPUBIRD1_RS14025 () | 3125570..3125911 | - | 342 | WP_014591178.1 | head-tail connector protein | - |
| PPUBIRD1_RS27555 () | 3125915..3126448 | - | 534 | WP_158306294.1 | hypothetical protein | - |
| PPUBIRD1_RS14035 () | 3126496..3127680 | - | 1185 | WP_014591179.1 | phage major capsid protein | - |
| PPUBIRD1_RS14040 () | 3127683..3128540 | - | 858 | WP_014591180.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| PPUBIRD1_RS14045 () | 3128544..3129854 | - | 1311 | WP_014591181.1 | phage portal protein | - |
| PPUBIRD1_RS27645 () | 3129847..3130008 | - | 162 | WP_085983377.1 | hypothetical protein | - |
| PPUBIRD1_RS14050 () | 3130005..3131684 | - | 1680 | WP_014591182.1 | terminase large subunit | - |
| PPUBIRD1_RS14055 () | 3131688..3132164 | - | 477 | WP_041166996.1 | terminase small subunit | - |
| PPUBIRD1_RS14060 () | 3132321..3132659 | - | 339 | WP_041166997.1 | HNH endonuclease | - |
| PPUBIRD1_RS14065 () | 3132760..3133230 | - | 471 | WP_041166998.1 | hypothetical protein | - |
| PPUBIRD1_RS14070 () | 3133327..3133644 | - | 318 | WP_041166999.1 | hypothetical protein | - |
| PPUBIRD1_RS14075 () | 3133644..3134015 | - | 372 | WP_014591184.1 | hypothetical protein | - |
| PPUBIRD1_RS14080 () | 3134041..3134463 | - | 423 | WP_014591185.1 | hypothetical protein | - |
| PPUBIRD1_RS26390 () | 3134612..3134794 | + | 183 | WP_016715573.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| PPUBIRD1_RS14085 () | 3134832..3135233 | + | 402 | WP_014591186.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| PPUBIRD1_RS14090 () | 3135327..3135887 | - | 561 | WP_041167000.1 | hypothetical protein | - |
| PPUBIRD1_RS14095 () | 3136042..3136431 | - | 390 | WP_041167001.1 | antitermination protein Q | - |
| PPUBIRD1_RS14100 () | 3136443..3136760 | - | 318 | WP_041167002.1 | hypothetical protein | - |
| PPUBIRD1_RS14105 () | 3136757..3137035 | - | 279 | WP_041167003.1 | hypothetical protein | - |
| PPUBIRD1_RS14110 () | 3137032..3138330 | - | 1299 | WP_014591189.1 | hypothetical protein ; Integrase | Integrase |
| PPUBIRD1_RS14115 () | 3138327..3138755 | - | 429 | WP_014591190.1 | VRR-NUC domain-containing protein | - |
| PPUBIRD1_RS14120 () | 3138752..3139048 | - | 297 | WP_014591191.1 | DUF1364 domain-containing protein | - |
| PPUBIRD1_RS14125 () | 3139051..3139860 | - | 810 | WP_014591192.1 | ATP-binding protein | - |
| PPUBIRD1_RS14130 () | 3139850..3140707 | - | 858 | WP_080557800.1 | replication protein | - |
| PPUBIRD1_RS14135 () | 3140864..3141058 | - | 195 | WP_026034465.1 | Cro/Cl family transcriptional regulator | - |
| PPUBIRD1_RS14140 () | 3141164..3142045 | + | 882 | WP_014591194.1 | XRE family transcriptional regulator | - |
| PPUBIRD1_RS14145 () | 3142074..3142391 | - | 318 | WP_014591195.1 | DUF1654 domain-containing protein | - |
| PPUBIRD1_RS14150 () | 3143197..3143580 | + | 384 | WP_014591196.1 | hypothetical protein | VF |
| PPUBIRD1_RS14155 () | 3143599..3143937 | + | 339 | WP_014591197.1 | hypothetical protein | - |
| PPUBIRD1_RS14160 () | 3143934..3144431 | + | 498 | WP_014591198.1 | single-stranded DNA-binding protein | - |
| PPUBIRD1_RS27650 () | 3144434..3144595 | + | 162 | WP_014591199.1 | hypothetical protein | - |
| PPUBIRD1_RS14165 () | 3144684..3145031 | + | 348 | WP_014591200.1 | hypothetical protein | - |
| PPUBIRD1_RS14170 () | 3145058..3145873 | + | 816 | WP_014591201.1 | DUF2303 family protein | - |
| PPUBIRD1_RS27210 () | 3145920..3146525 | - | 606 | WP_148236312.1 | hypothetical protein | - |
| PPUBIRD1_RS14180 () | 3146584..3147496 | + | 913 | Protein_2809 | DNA cytosine methyltransferase | - |
| PPUBIRD1_RS27215 () | 3147560..3148132 | - | 573 | WP_041167005.1 | hypothetical protein | - |
| PPUBIRD1_RS14190 () | 3148211..3148894 | + | 684 | WP_148236313.1 | hypothetical protein | - |
| PPUBIRD1_RS14195 () | 3149740..3150600 | + | 861 | WP_041167006.1 | hypothetical protein | - |
| PPUBIRD1_RS14200 () | 3150597..3150848 | + | 252 | WP_014591205.1 | hypothetical protein | - |
| PPUBIRD1_RS14205 () | 3150845..3151072 | + | 228 | WP_014591206.1 | hypothetical protein | - |
| PPUBIRD1_RS14210 () | 3151069..3151464 | + | 396 | WP_014591207.1 | DUF2591 family protein | - |
| PPUBIRD1_RS14215 () | 3151461..3151646 | + | 186 | WP_041167007.1 | hypothetical protein | - |
| PPUBIRD1_RS14220 () | 3151693..3151893 | + | 201 | WP_008099673.1 | hypothetical protein | - |
| PPUBIRD1_RS14225 () | 3151942..3152259 | + | 318 | WP_041167008.1 | hypothetical protein | - |
| PPUBIRD1_RS14230 () | 3152472..3153665 | + | 1194 | WP_014591208.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| PPUBIRD1_RS14235 () | 3153686..3155272 | + | 1587 | WP_014591209.1 | ABC-F family ATPase | - |
| PPUBIRD1_RS14240 () | 3155501..3156694 | + | 1194 | WP_014591210.1 | MFS transporter | - |
| PPUBIRD1_RS14245 () | 3156656..3157687 | - | 1032 | WP_041167009.1 | dienelactone hydrolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|