MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 81860 bp
Accession: NC_017376 Location: 19737..101596 Organism: Helicobacter pylori SNT49 Replicon: chromosome
Accession: NC_017376 Location: 19737..101596 Organism: Helicobacter pylori SNT49 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSNT_RS00105 () | 16974..18314 | + | 1341 | WP_014536644.1 | hypothetical protein | - |
| HPSNT_RS00110 () | 18414..19379 | + | 966 | WP_000785470.1 | chemotaxis protein CheV1 | - |
| HPSNT_RS00115 () | 19376..20593 | + | 1218 | WP_000760868.1 | carboxynorspermidine decarboxylase | - |
| HPSNT_RS00120 () | 20603..21175 | - | 573 | WP_000819566.1 | lipid A 1-phosphatase LpxE | - |
| HPSNT_RS00125 () | 21186..22751 | - | 1566 | WP_000157526.1 | Phosphoethanolamine transferase EptA | VF |
| HPSNT_RS00130 () | 23140..25209 | - | 2070 | WP_000726398.1 | hypothetical protein | VF |
| HPSNT_RS00135 () | 25730..27010 | - | 1281 | WP_000117424.1 | citrate synthase | - |
| HPSNT_RS00140 () | 27210..28487 | + | 1278 | WP_000331115.1 | isocitrate dehydrogenase (NADP(+)) | - |
| HPSNT_RS00145 () | 28559..29086 | + | 528 | WP_014536646.1 | DUF1523 family protein | - |
| HPSNT_RS00150 () | 29063..29719 | - | 657 | WP_000897559.1 | dethiobiotin synthase | - |
| HPSNT_RS00155 () | 29723..31362 | - | 1640 | Protein_25 | hypothetical protein | - |
| HPSNT_RS00160 () | 31470..31883 | + | 414 | WP_001023008.1 | universal stress protein | - |
| HPSNT_RS00165 () | 31906..32181 | + | 276 | WP_000708538.1 | ATP-dependent Clp protease adaptor ClpS | - |
| HPSNT_RS00170 () | 32181..34406 | + | 2226 | WP_001051471.1 | ATP-dependent Clp protease ATP-binding subunit ClpA | VF |
| HPSNT_RS00175 () | 34396..34749 | + | 354 | WP_000142229.1 | aspartate 1-decarboxylase | - |
| HPSNT_RS00180 () | 34752..35045 | + | 294 | WP_000347915.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPSNT_RS00185 () | 35045..36049 | + | 1005 | WP_000468459.1 | PDZ domain-containing protein | - |
| HPSNT_RS00190 () | 36057..37112 | + | 1056 | WP_000786650.1 | P-type conjugative transfer protein TrbL | - |
| HPSNT_RS00195 () | 37128..37241 | + | 114 | WP_001217873.1 | hypothetical protein | - |
| HPSNT_RS00200 () | 37238..37981 | + | 744 | WP_001208407.1 | hypothetical protein | VF |
| HPSNT_RS00205 () | 37981..38952 | + | 972 | WP_014536647.1 | hypothetical protein | VF |
| HPSNT_RS00210 () | 38945..40075 | + | 1131 | WP_001045863.1 | Type IV secretion system protein PtlG | VF |
| HPSNT_RS00215 () | 40145..41557 | + | 1413 | WP_000694844.1 | Alginate biosynthesis protein AlgA | VF |
| HPSNT_RS00220 () | 41587..42732 | + | 1146 | WP_000659832.1 | GDP-mannose 4,6-dehydratase | VF |
| HPSNT_RS00225 () | 42725..43657 | + | 933 | WP_001002914.1 | GDP-L-colitose synthase | VF |
| HPSNT_RS00235 () | 44221..45219 | - | 999 | WP_000378786.1 | hydrogenase expression/formation protein HypE | - |
| HPSNT_RS00240 () | 45231..47483 | - | 2253 | WP_014536648.1 | carbamoyltransferase HypF | - |
| HPSNT_RS00245 () | 47480..48472 | - | 993 | WP_000827204.1 | agmatine/peptidylarginine deiminase | - |
| HPSNT_RS00250 () | 48524..49222 | - | 699 | WP_000614606.1 | site-specific DNA-methyltransferase | - |
| HPSNT_RS00255 () | 49219..49785 | - | 567 | WP_041200381.1 | DNA cytosine methyltransferase | - |
| HPSNT_RS00260 () | 49824..51314 | - | 1491 | WP_000510267.1 | sodium/proline symporter PutP | - |
| HPSNT_RS00265 () | 51341..54898 | - | 3558 | WP_001169374.1 | bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase | - |
| HPSNT_RS00270 () | 55228..55437 | + | 210 | WP_000849030.1 | hypothetical protein | - |
| HPSNT_RS07845 () | 56307..57148 | + | 842 | Protein_48 | dihydrolipoamide acetyltransferase | - |
| HPSNT_RS07850 () | 57145..57483 | + | 339 | WP_041200385.1 | hypothetical protein | - |
| HPSNT_RS08255 () | 57545..58738 | + | 1194 | Protein_50 | hypothetical protein | - |
| HPSNT_RS00295 () | 58783..59298 | + | 516 | Protein_51 | hypothetical protein | - |
| HPSNT_RS00300 () | 59314..59574 | + | 261 | WP_000092089.1 | hypothetical protein | - |
| HPSNT_RS00305 () | 59584..60987 | + | 1404 | WP_041200387.1 | HNH endonuclease | - |
| HPSNT_RS00310 () | 60957..61271 | + | 315 | Protein_54 | SMI1/KNR4 family protein | - |
| HPSNT_RS08190 () | 61504..61731 | + | 228 | WP_000749485.1 | hypothetical protein | - |
| HPSNT_RS00320 () | 61731..62580 | + | 850 | Protein_56 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HPSNT_RS00325 () | 62643..63848 | - | 1206 | WP_001146461.1 | hypothetical protein | - |
| HPSNT_RS00330 () | 63848..65233 | - | 1386 | WP_000387734.1 | hypothetical protein | - |
| HPSNT_RS00335 () | 65243..67439 | - | 2197 | Protein_59 | competence protein | - |
| HPSNT_RS00340 () | 67475..68869 | - | 1395 | WP_000895785.1 | hypothetical protein | - |
| HPSNT_RS00345 () | 68870..69907 | - | 1038 | WP_001075321.1 | hypothetical protein | - |
| HPSNT_RS00350 () | 70062..78488 | + | 8427 | WP_001170020.1 | DEAD/DEAH box helicase family protein | - |
| HPSNT_RS00355 () | 78755..79411 | + | 657 | WP_000587422.1 | ParA family protein | - |
| HPSNT_RS00360 () | 79493..79777 | + | 285 | WP_000394643.1 | hypothetical protein | - |
| HPSNT_RS00365 () | 79809..80996 | + | 1188 | WP_000753638.1 | hypothetical protein | - |
| HPSNT_RS00370 () | 81021..82931 | - | 1911 | WP_001162743.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HPSNT_RS00375 () | 83227..83541 | + | 315 | WP_000065302.1 | hypothetical protein | Antitoxin Detail |
| HPSNT_RS00380 () | 83534..83815 | + | 282 | WP_000921928.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HPSNT_RS00385 () | 84137..85864 | - | 1728 | WP_001227391.1 | Conjugal transfer protein TraG | VF |
| HPSNT_RS00390 () | 85865..86422 | - | 558 | WP_001167765.1 | hypothetical protein | - |
| HPSNT_RS00395 () | 86423..86713 | - | 291 | WP_000159825.1 | hypothetical protein | - |
| HPSNT_RS00400 () | 86710..87165 | - | 456 | WP_000795456.1 | hypothetical protein | - |
| HPSNT_RS00405 () | 87162..88103 | - | 942 | WP_000625151.1 | Type IV secretion system protein VirB11 | VF |
| HPSNT_RS00410 () | 88093..88398 | - | 306 | WP_014536654.1 | hypothetical protein | - |
| HPSNT_RS00415 () | 88395..88658 | - | 264 | WP_000564646.1 | hypothetical protein | - |
| HPSNT_RS00420 () | 88651..88944 | - | 294 | WP_000773938.1 | hypothetical protein | - |
| HPSNT_RS00425 () | 89014..90249 | - | 1236 | WP_000734981.1 | Type IV secretion system protein virB10 | VF |
| HPSNT_RS00430 () | 90246..91787 | - | 1542 | WP_000714787.1 | hypothetical protein | VF |
| HPSNT_RS00435 () | 91787..92773 | - | 987 | WP_000416475.1 | hypothetical protein | VF |
| HPSNT_RS00440 () | 92903..94839 | - | 1937 | Protein_80 | type IA DNA topoisomerase | - |
| HPSNT_RS00445 () | 94832..97330 | - | 2499 | WP_000478392.1 | Type IV secretion system protein PtlC | VF |
| HPSNT_RS00450 () | 97343..97603 | - | 261 | WP_000602756.1 | hypothetical protein | - |
| HPSNT_RS00455 () | 97604..97906 | - | 303 | WP_000649840.1 | TrbC/VirB2 family protein | - |
| HPSNT_RS00460 () | 97896..99812 | - | 1917 | WP_000332143.1 | hypothetical protein | - |
| HPSNT_RS00465 () | 99823..100587 | - | 765 | WP_000667730.1 | hypothetical protein | - |
| HPSNT_RS00470 () | 100643..100812 | + | 170 | Protein_86 | SMI1/KNR4 family protein | - |
| HPSNT_RS00475 () | 100814..101161 | + | 348 | WP_000491342.1 | hypothetical protein | - |
| HPSNT_RS00480 () | 101158..101448 | + | 291 | WP_080004644.1 | cell division protein | - |
| HPSNT_RS00485 () | 101826..103341 | + | 1516 | Protein_89 | DNA translocase FtsK | - |
| HPSNT_RS00490 () | 103412..104209 | - | 798 | WP_001099424.1 | urease accessory protein UreD | - |
| HPSNT_RS00495 () | 104209..104808 | - | 600 | WP_000238767.1 | urease accessory protein UreG | - |
| HPSNT_RS00500 () | 104837..105601 | - | 765 | WP_000357393.1 | urease accessory protein UreF | - |
| HPSNT_RS00505 () | 105613..106125 | - | 513 | WP_000583048.1 | urease accessory protein UreE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|