MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 58884 bp
Accession: NC_017372 Location: 1587161..1646044 Organism: Helicobacter pylori India7 (Helicobacter pylori Ind7) Replicon: chromosome
Accession: NC_017372 Location: 1587161..1646044 Organism: Helicobacter pylori India7 (Helicobacter pylori Ind7) Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPIN_RS07530 () | 1584138..1585490 | - | 1353 | WP_014536235.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| HPIN_RS07535 () | 1585483..1586277 | - | 795 | WP_001178827.1 | Jag N-terminal domain-containing protein | - |
| HPIN_RS07540 () | 1586277..1587917 | - | 1641 | WP_000360243.1 | membrane protein insertase YidC | - |
| HPIN_RS07545 () | 1587923..1588276 | - | 354 | WP_001245498.1 | membrane protein insertion efficiency factor YidD | - |
| HPIN_RS07550 () | 1588263..1588748 | - | 486 | WP_001112486.1 | ribonuclease P protein component | - |
| HPIN_RS07555 () | 1588708..1588842 | - | 135 | WP_001847286.1 | 50S ribosomal protein L34 | - |
| HPIN_RS07560 () | 1588914..1589315 | - | 402 | WP_000755082.1 | biopolymer transporter ExbD | - |
| HPIN_RS07565 () | 1589326..1589778 | - | 453 | WP_000661835.1 | TonB-system energizer ExbB | - |
| HPIN_RS07570 () | 1589784..1590242 | - | 459 | WP_000766500.1 | SsrA-binding protein | - |
| HPIN_RS07575 () | 1590239..1591042 | - | 804 | WP_000542970.1 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase | - |
| HPIN_RS07580 () | 1591042..1591272 | - | 231 | WP_000906447.1 | carbon storage regulator | - |
| HPIN_RS07585 () | 1591290..1591778 | - | 489 | WP_014536236.1 | hypothetical protein | VF |
| HPIN_RS07590 () | 1591902..1592681 | + | 780 | WP_000896373.1 | hypothetical protein | - |
| HPIN_RS07600 () | 1595009..1595218 | + | 210 | WP_000888607.1 | hypothetical protein | - |
| HPIN_RS07605 () | 1595780..1596235 | - | 456 | WP_000370553.1 | hypothetical protein | - |
| HPIN_RS07610 () | 1596246..1596731 | - | 486 | WP_000897943.1 | hypothetical protein | - |
| HPIN_RS07615 () | 1596740..1597438 | - | 699 | WP_001293480.1 | toll/interleukin-1 receptor domain-containing protein | - |
| HPIN_RS07620 () | 1597648..1597908 | - | 261 | WP_000752195.1 | hypothetical protein | - |
| HPIN_RS07625 () | 1597979..1598857 | + | 879 | WP_000269536.1 | signal peptide peptidase SppA | - |
| HPIN_RS07630 () | 1598860..1599741 | + | 882 | WP_014536239.1 | formyltetrahydrofolate deformylase | - |
| HPIN_RS07635 () | 1599783..1600979 | + | 1197 | WP_014536240.1 | restriction endonuclease subunit S | - |
| HPIN_RS07645 () | 1601630..1601845 | - | 216 | WP_080004686.1 | nickel-binding protein HpnL | - |
| HPIN_RS07650 () | 1602100..1602915 | + | 816 | WP_000259442.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| HPIN_RS07655 () | 1602953..1605028 | + | 2076 | WP_000131588.1 | ribonuclease J | - |
| HPIN_RS07660 () | 1605012..1606001 | + | 990 | WP_000062249.1 | Phosphoheptose isomerase | VF |
| HPIN_RS07665 () | 1605998..1607071 | + | 1074 | WP_000647749.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| HPIN_RS07670 () | 1607269..1607451 | + | 183 | WP_001917609.1 | nickel storage protein Hpn | - |
| HPIN_RS08355 () | 1607759..1608591 | + | 833 | Protein_1469 | outer membrane beta-barrel protein | - |
| HPIN_RS07685 () | 1608722..1609342 | - | 621 | WP_000671811.1 | hypothetical protein | - |
| HPIN_RS07690 () | 1609444..1609701 | + | 258 | WP_001217191.1 | RNA-binding S4 domain-containing protein | - |
| HPIN_RS07695 () | 1609725..1612487 | + | 2763 | WP_000393436.1 | isoleucine--tRNA ligase | - |
| HPIN_RS07700 () | 1612504..1613418 | + | 915 | WP_000449342.1 | hypothetical protein | VF |
| HPIN_RS07705 () | 1613419..1614723 | + | 1305 | WP_001128780.1 | V-type ATP synthase beta chain | VF |
| HPIN_RS07710 () | 1614734..1615000 | + | 267 | WP_000445741.1 | hypothetical protein | VF |
| HPIN_RS07715 () | 1615004..1615783 | + | 780 | WP_000894416.1 | UDP-N-acetylmuramate dehydrogenase | - |
| HPIN_RS08360 () | 1616259..1616525 | - | 267 | WP_014536242.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | - |
| HPIN_RS07725 () | 1616512..1616790 | - | 279 | WP_000910426.1 | hypothetical protein | - |
| HPIN_RS08455 () | 1617628..1617771 | + | 144 | WP_154017395.1 | hypothetical protein | - |
| HPIN_RS07735 () | 1617936..1618643 | - | 708 | Protein_1480 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| HPIN_RS07740 () | 1618615..1618866 | - | 252 | WP_001116806.1 | hypothetical protein | - |
| HPIN_RS07745 () | 1619056..1620129 | + | 1074 | WP_001278372.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| HPIN_RS07755 () | 1620210..1620886 | - | 677 | Protein_1483 | CAAX protease | - |
| HPIN_RS07760 () | 1620959..1621627 | - | 669 | Protein_1484 | P-type conjugative transfer protein TrbL | - |
| HPIN_RS07765 () | 1621624..1621797 | + | 174 | Protein_1485 | ParA family protein | - |
| HPIN_RS07770 () | 1621879..1622163 | + | 285 | WP_000394635.1 | hypothetical protein | - |
| HPIN_RS07775 () | 1622247..1623380 | + | 1134 | WP_049768375.1 | hypothetical protein | - |
| HPIN_RS07780 () | 1623405..1625314 | - | 1910 | Protein_1488 | relaxase/mobilization nuclease domain-containing protein | - |
| HPIN_RS07785 () | 1625608..1625922 | + | 315 | WP_000065296.1 | hypothetical protein | Antitoxin Detail |
| HPIN_RS07790 () | 1625915..1626196 | + | 282 | WP_000921933.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HPIN_RS07795 () | 1626447..1627022 | - | 576 | WP_001146911.1 | hypothetical protein | - |
| HPIN_RS07800 () | 1627080..1628147 | - | 1068 | WP_000014381.1 | elongation factor Ts | - |
| HPIN_RS07805 () | 1628147..1628941 | - | 795 | WP_000258279.1 | 30S ribosomal protein S2 | - |
| HPIN_RS07810 () | 1629191..1632037 | + | 2847 | WP_000380066.1 | RecB-like helicase | - |
| HPIN_RS07815 () | 1632061..1633377 | + | 1317 | WP_001022245.1 | sodium/proton antiporter NhaA | - |
| HPIN_RS07820 () | 1633425..1633808 | + | 384 | WP_000531786.1 | preprotein translocase subunit YajC | - |
| HPIN_RS07825 () | 1633805..1635382 | + | 1578 | WP_000765467.1 | protein translocase subunit SecD | - |
| HPIN_RS07830 () | 1635391..1636362 | + | 972 | WP_000418597.1 | protein translocase subunit SecF | - |
| HPIN_RS07835 () | 1636372..1636713 | + | 342 | WP_000383773.1 | hypothetical protein | - |
| HPIN_RS07840 () | 1636723..1639143 | + | 2421 | WP_000345745.1 | leucine--tRNA ligase | - |
| HPIN_RS07845 () | 1639140..1639652 | + | 513 | WP_001202108.1 | hypothetical protein | - |
| HPIN_RS07850 () | 1639642..1640826 | + | 1185 | WP_000798456.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| HPIN_RS07855 () | 1640826..1641752 | + | 927 | WP_001136018.1 | M23 family metallopeptidase | - |
| HPIN_RS07860 () | 1641761..1642699 | + | 939 | WP_000478083.1 | hypothetical protein | VF |
| HPIN_RS07865 () | 1642618..1643028 | + | 411 | WP_001917026.1 | polymer-forming cytoskeletal protein | - |
| HPIN_RS07870 () | 1643032..1646031 | + | 3000 | WP_000616374.1 | transcription-repair coupling factor | - |
| HPIN_RS07875 () | 1646156..1646659 | + | 504 | WP_000763648.1 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
| HPIN_RS07880 () | 1646670..1647908 | + | 1239 | WP_000807843.1 | cytochrome bc complex cytochrome b subunit | - |
| HPIN_RS07885 () | 1647905..1648762 | + | 858 | WP_000657641.1 | cytochrome c1 | - |
| HPIN_RS08365 () | 1648944..1649157 | - | 214 | Protein_1510 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|