MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 51074 bp
Accession: NC_017367 Location: 277195..328268 Organism: Helicobacter pylori F57 Replicon: chromosome
Accession: NC_017367 Location: 277195..328268 Organism: Helicobacter pylori F57 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPF57_RS01355 () | 272425..272964 | + | 540 | WP_000157402.1 | DUF2393 domain-containing protein | - |
| HPF57_RS01360 () | 273019..274569 | - | 1551 | WP_000889787.1 | ABC transporter ATP-binding protein | - |
| HPF57_RS01365 () | 274579..275601 | - | 1023 | WP_000116849.1 | ABC transporter permease | - |
| HPF57_RS01375 () | 275941..277386 | + | 1446 | WP_000788621.1 | Hop family outer membrane protein HopF | - |
| HPF57_RS01380 () | 277399..278817 | + | 1419 | WP_000799332.1 | hypothetical protein | VF |
| HPF57_RS01385 () | 278916..280151 | + | 1236 | WP_000796188.1 | adenylosuccinate synthase | - |
| HPF57_RS01390 () | 280148..280576 | + | 429 | WP_000712752.1 | hypothetical protein | VF |
| HPF57_RS01395 () | 280569..281228 | + | 660 | WP_001226696.1 | MotE family protein | - |
| HPF57_RS01400 () | 281228..282280 | + | 1053 | WP_000471108.1 | Metalloprotease MmpA | VF |
| HPF57_RS01405 () | 282293..283555 | + | 1263 | WP_000382858.1 | exodeoxyribonuclease VII large subunit | - |
| HPF57_RS01410 () | 283574..284302 | - | 729 | Protein_268 | site-specific DNA-methyltransferase | - |
| HPF57_RS01415 () | 284353..285117 | + | 765 | WP_000667755.1 | hypothetical protein | - |
| HPF57_RS01420 () | 285128..287044 | + | 1917 | WP_000332160.1 | hypothetical protein | - |
| HPF57_RS01425 () | 287034..287336 | + | 303 | WP_000649841.1 | TrbC/VirB2 family protein | - |
| HPF57_RS01430 () | 287337..287597 | + | 261 | WP_000602756.1 | hypothetical protein | - |
| HPF57_RS01435 () | 287610..290108 | + | 2499 | WP_000478395.1 | Type IV secretion system protein PtlC | VF |
| HPF57_RS01440 () | 290101..292035 | + | 1935 | WP_041201912.1 | type IA DNA topoisomerase | - |
| HPF57_RS01445 () | 292168..293154 | + | 987 | WP_000410981.1 | hypothetical protein | VF |
| HPF57_RS01450 () | 293154..294695 | + | 1542 | WP_000714783.1 | hypothetical protein | VF |
| HPF57_RS01455 () | 294692..295927 | + | 1236 | WP_000734990.1 | Type IV secretion system protein virB10 | VF |
| HPF57_RS01460 () | 295997..296290 | + | 294 | WP_041201867.1 | hypothetical protein | - |
| HPF57_RS01465 () | 296283..296546 | + | 264 | WP_000564642.1 | hypothetical protein | - |
| HPF57_RS08290 () | 296543..296695 | + | 153 | WP_014535548.1 | hypothetical protein | - |
| HPF57_RS01475 () | 296841..297782 | + | 942 | WP_000625136.1 | Type IV secretion system protein VirB11 | VF |
| HPF57_RS01480 () | 297779..298234 | + | 456 | WP_000795411.1 | hypothetical protein | - |
| HPF57_RS01485 () | 298231..298521 | + | 291 | WP_000159829.1 | hypothetical protein | - |
| HPF57_RS01490 () | 298522..299079 | + | 558 | WP_001167763.1 | hypothetical protein | - |
| HPF57_RS01495 () | 299080..300803 | + | 1724 | Protein_285 | Protein VirD4 | VF |
| HPF57_RS01500 () | 301112..301393 | - | 282 | WP_000921941.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| HPF57_RS01505 () | 301386..301700 | - | 315 | WP_000065312.1 | hypothetical protein | Antitoxin Detail |
| HPF57_RS01510 () | 301996..303906 | + | 1911 | WP_001162750.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HPF57_RS01515 () | 303931..305094 | - | 1164 | WP_000753629.1 | hypothetical protein | - |
| HPF57_RS01520 () | 305126..305395 | - | 270 | WP_000394631.1 | hypothetical protein ; Integrase | Integrase |
| HPF57_RS01525 () | 305477..306133 | - | 657 | WP_000587366.1 | ParA family protein | - |
| HPF57_RS01530 () | 306399..314855 | - | 8457 | WP_001169849.1 | DEAD/DEAH box helicase family protein | - |
| HPF57_RS01535 () | 315009..316046 | + | 1038 | WP_001075353.1 | hypothetical protein | - |
| HPF57_RS07965 () | 316047..316718 | + | 672 | Protein_294 | hypothetical protein | - |
| HPF57_RS07970 () | 316736..317439 | + | 704 | Protein_295 | hypothetical protein | - |
| HPF57_RS01545 () | 317496..319613 | + | 2118 | WP_014535553.1 | hypothetical protein | - |
| HPF57_RS01550 () | 319617..321002 | + | 1386 | WP_000645662.1 | hypothetical protein | - |
| HPF57_RS01555 () | 321002..322204 | + | 1203 | WP_001146626.1 | hypothetical protein | - |
| HPF57_RS01560 () | 322267..323343 | - | 1077 | WP_000749459.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HPF57_RS01565 () | 323629..324087 | - | 459 | Protein_300 | site-specific DNA-methyltransferase | - |
| HPF57_RS01570 () | 324080..324526 | - | 447 | WP_000226273.1 | hypothetical protein | - |
| HPF57_RS08305 () | 324544..324693 | - | 150 | WP_014535554.1 | hypothetical protein | - |
| HPF57_RS01575 () | 324875..325570 | + | 696 | WP_000049997.1 | hypothetical protein | - |
| HPF57_RS01580 () | 325567..326325 | + | 759 | WP_000806077.1 | site-specific DNA-methyltransferase | - |
| HPF57_RS01585 () | 326397..328967 | + | 2571 | WP_001048014.1 | AAA family ATPase | - |
| HPF57_RS01590 () | 329024..329743 | + | 720 | WP_001870247.1 | cytochrome c biogenesis protein CcdA | - |
| HPF57_RS01595 () | 329753..330889 | + | 1137 | WP_000924940.1 | dihydroorotase family protein | - |
| HPF57_RS01600 () | 330874..332103 | + | 1230 | WP_001155830.1 | adenosine deaminase | - |
| HPF57_RS01605 () | 332164..332406 | + | 243 | WP_000780041.1 | nuclease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|