MGE detailed information
MGE type: Genomic_island MGE length: 58338 bp
Accession: NC_017271 Location: 3641705..3700042 Organism: Xanthomonas campestris pv. raphani 756C Replicon: chromosome
Accession: NC_017271 Location: 3641705..3700042 Organism: Xanthomonas campestris pv. raphani 756C Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XCR_RS15515 () | 3637732..3638613 | + | 882 | WP_011038204.1 | outer membrane protein assembly factor BamD | - |
| XCR_RS15520 () | 3639064..3640056 | + | 993 | WP_014508698.1 | hypothetical protein | - |
| XCR_RS15525 () | 3640050..3641705 | - | 1656 | WP_043921908.1 | NAD+ synthase | - |
| XCR_RS15530 () | 3641705..3642007 | - | 303 | WP_011038207.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XCR_RS15535 () | 3642011..3642421 | - | 411 | WP_029628876.1 | DNA-binding protein | - |
| XCR_RS15540 () | 3642525..3643400 | - | 876 | WP_011038208.1 | succinate--CoA ligase subunit alpha | - |
| XCR_RS15545 () | 3643425..3644594 | - | 1170 | WP_014508701.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| XCR_RS15550 () | 3644828..3646438 | + | 1611 | WP_014508702.1 | Globin-coupled histidine kinase | VF |
| XCR_RS15555 () | 3646647..3648041 | + | 1395 | WP_043921909.1 | Regulatory protein AtoC | VF |
| XCR_RS23200 () | 3648233..3648595 | + | 363 | WP_148263072.1 | hypothetical protein | - |
| XCR_RS15565 () | 3648540..3649331 | + | 792 | WP_202796265.1 | toxin | - |
| XCR_RS15570 () | 3649514..3651250 | - | 1737 | WP_043921911.1 | putative type II secretion system protein HxcR | VF |
| XCR_RS15575 () | 3651388..3651819 | - | 432 | WP_043922199.1 | pilin | - |
| XCR_RS15580 () | 3652168..3653425 | + | 1258 | Protein_3087 | Type II secretion system protein F | VF |
| XCR_RS15585 () | 3653432..3654295 | + | 864 | WP_011038216.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| XCR_RS15590 () | 3654309..3654932 | + | 624 | WP_014508710.1 | dephospho-CoA kinase | - |
| XCR_RS15595 () | 3655465..3655866 | + | 402 | WP_043921912.1 | type I toxin-antitoxin system SymE family toxin | - |
| XCR_RS15600 () | 3655941..3656231 | + | 291 | WP_014508712.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| XCR_RS15605 () | 3656228..3656719 | + | 492 | WP_014508713.1 | GNAT family N-acetyltransferase | Toxin Detail |
| XCR_RS15610 () | 3656862..3658196 | - | 1335 | WP_012437598.1 | HAMP domain-containing histidine kinase | - |
| XCR_RS15615 () | 3658189..3658866 | - | 678 | WP_003490678.1 | Transcriptional regulatory protein TcrA | VF |
| XCR_RS15620 () | 3659516..3660391 | - | 876 | WP_043921913.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| XCR_RS15625 () | 3660883..3663012 | + | 2130 | WP_014508716.1 | glycogen debranching protein GlgX | - |
| XCR_RS15630 () | 3663554..3663946 | - | 393 | WP_011038224.1 | H-NS histone family protein | - |
| XCR_RS15635 () | 3664037..3664432 | - | 396 | WP_042594933.1 | hypothetical protein | - |
| XCR_RS23705 () | 3664608..3664763 | - | 156 | WP_042594934.1 | hypothetical protein | - |
| XCR_RS23205 () | 3665058..3665225 | - | 168 | Protein_3100 | AraC family transcriptional regulator | - |
| XCR_RS15645 () | 3665355..3665726 | - | 372 | WP_014508721.1 | hypothetical protein | - |
| XCR_RS22275 () | 3666410..3666751 | + | 342 | WP_080565911.1 | hypothetical protein | - |
| XCR_RS15650 () | 3666804..3668414 | - | 1611 | WP_014508722.1 | MobA/MobL family protein | - |
| XCR_RS15655 () | 3668682..3669008 | + | 327 | WP_043921914.1 | conjugal transfer protein TraD | - |
| XCR_RS22280 () | 3669190..3669540 | + | 351 | WP_080565912.1 | HNH endonuclease | - |
| XCR_RS15660 () | 3669534..3670091 | + | 558 | WP_014508723.1 | hypothetical protein | - |
| XCR_RS15665 () | 3670985..3671374 | + | 390 | WP_043922200.1 | HNH endonuclease | - |
| XCR_RS15670 () | 3671386..3672012 | - | 627 | WP_162470855.1 | hypothetical protein | - |
| XCR_RS15675 () | 3672077..3675808 | - | 3732 | WP_162470830.1 | hypothetical protein | - |
| XCR_RS15680 () | 3676080..3676718 | - | 639 | WP_043921915.1 | DUF1629 domain-containing protein | - |
| XCR_RS22285 () | 3676851..3678215 | - | 1365 | WP_014508728.1 | DNA double-strand break repair nuclease NurA | - |
| XCR_RS15690 () | 3678218..3680335 | - | 2118 | WP_148263073.1 | ATP-binding protein | - |
| XCR_RS15695 () | 3680322..3681212 | - | 891 | WP_033836759.1 | DNA adenine methylase | - |
| XCR_RS15700 () | 3681691..3682170 | - | 480 | WP_014508730.1 | DNA repair protein RadC | - |
| XCR_RS15705 () | 3682573..3682797 | - | 225 | WP_039405436.1 | hypothetical protein | - |
| XCR_RS15710 () | 3682991..3683437 | + | 447 | WP_014508731.1 | hypothetical protein | - |
| XCR_RS15715 () | 3684013..3685413 | + | 1401 | WP_014508732.1 | hypothetical protein ; Integrase | Integrase |
| XCR_RS15720 () | 3685765..3687180 | + | 1416 | WP_014508733.1 | hypothetical protein | - |
| XCR_RS15725 () | 3687181..3688416 | - | 1236 | WP_202796266.1 | abortive infection family protein | - |
| XCR_RS15730 () | 3688461..3689654 | - | 1194 | WP_014508735.1 | GIY-YIG nuclease family protein | - |
| XCR_RS15735 () | 3689647..3691752 | - | 2106 | WP_043921917.1 | DEAD/DEAH box helicase | - |
| XCR_RS15740 () | 3691749..3694535 | - | 2787 | WP_043921918.1 | class I SAM-dependent DNA methyltransferase | - |
| XCR_RS15745 () | 3694873..3695196 | - | 324 | WP_108723645.1 | helix-turn-helix domain-containing protein | - |
| XCR_RS15750 () | 3695301..3696053 | + | 753 | WP_014508739.1 | hypothetical protein | - |
| XCR_RS15755 () | 3696096..3696410 | + | 315 | WP_014508740.1 | hypothetical protein | - |
| XCR_RS15760 () | 3696407..3696787 | + | 381 | WP_193387299.1 | hypothetical protein | - |
| XCR_RS23210 () | 3697046..3698044 | - | 999 | WP_148263074.1 | hypothetical protein | - |
| XCR_RS15770 () | 3698081..3698263 | - | 183 | WP_141762696.1 | hypothetical protein | - |
| XCR_RS15775 () | 3698519..3700090 | - | 1572 | WP_043921921.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| XCR_RS15785 () | 3700354..3702138 | - | 1785 | WP_043890239.1 | autotransporter domain-containing esterase | - |
| XCR_RS15790 () | 3702327..3702527 | + | 201 | WP_043921922.1 | sulfur carrier protein ThiS | - |
| XCR_RS15795 () | 3702576..3703370 | + | 795 | WP_011038257.1 | thiazole synthase | - |
| XCR_RS15800 () | 3703516..3704301 | + | 786 | WP_014508746.1 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|