MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 68552 bp
Accession: NC_017263 Location: 1..68552 Organism: Yersinia pestis biovar Medievalis str. Harbin 35 Replicon: plasmid pCD
Accession: NC_017263 Location: 1..68552 Organism: Yersinia pestis biovar Medievalis str. Harbin 35 Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YPC_RS20985 () | 352..996 | + | 645 | Protein_1 | IS3 family transposase ISYen3 | Transposase |
| YPC_RS20990 () | 1059..1451 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| YPC_RS20995 () | 1645..2304 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| YPC_RS21000 () | 2444..2743 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YPC_RS21005 () | 2736..2978 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| YPC_RS24010 () | 3144..3436 | - | 293 | Protein_6 | IS6 family transposase ISEas1 | Transposase |
| YPC_RS24845 () | 3522..3695 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| YPC_RS24455 () | 3844..4080 | - | 237 | WP_154020274.1 | hypothetical protein | - |
| YPC_RS21015 () | 4240..5205 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| YPC_RS21020 () | 5202..6368 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| YPC_RS24460 () | 7128..8273 | - | 1146 | Protein_11 | IS3 family transposase | - |
| YPC_RS21040 () | 8380..9009 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| YPC_RS24020 () | 9155..9448 | - | 294 | Protein_13 | IS3 family transposase | - |
| YPC_RS21045 () | 9607..10155 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| YPC_RS21050 () | 10655..11623 | + | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| YPC_RS21055 () | 11623..12021 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| YPC_RS24630 () | 12065..12376 | - | 312 | WP_002233188.1 | hypothetical protein | - |
| YPC_RS23525 () | 12427..12708 | + | 282 | Protein_18 | DDE-type integrase/transposase/recombinase | - |
| YPC_RS21065 () | 12726..13145 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| YPC_RS24465 () | 13673..13891 | - | 219 | Protein_20 | IS6 family transposase | - |
| YPC_RS24470 () | 13894..14139 | + | 246 | WP_116442925.1 | transposase | - |
| YPC_RS21070 () | 14021..14338 | + | 318 | Protein_22 | IS256 family transposase ISSod4 | Transposase |
| YPC_RS21075 () | 14381..15610 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| YPC_RS21080 () | 16004..16213 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| YPC_RS24025 () | 16234..16871 | + | 638 | Protein_25 | IS6 family transposase | - |
| YPC_RS24030 () | 16971..17114 | + | 144 | Protein_26 | IS256 family transposase IS285 | Transposase |
| YPC_RS21090 () | 17551..18471 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| YPC_RS21095 () | 18490..19695 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| YPC_RS21100 () | 19673..20179 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| YPC_RS21105 () | 20192..21172 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| YPC_RS21110 () | 21174..21461 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| YPC_RS21115 () | 21503..21943 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| YPC_RS21120 () | 21940..24054 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| YPC_RS21125 () | 24041..24385 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| YPC_RS21130 () | 24382..24750 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| YPC_RS21135 () | 24747..25118 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| YPC_RS21140 () | 25105..25383 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| YPC_RS21145 () | 25364..26245 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| YPC_RS21150 () | 26443..27762 | + | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| YPC_RS21155 () | 27759..28223 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| YPC_RS21160 () | 28223..29590 | + | 1368 | WP_002212950.1 | hypothetical protein | VF |
| YPC_RS21165 () | 29587..30510 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| YPC_RS21170 () | 30507..31160 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| YPC_RS21175 () | 31162..31428 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| YPC_RS21180 () | 31425..32210 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| YPC_RS21185 () | 32210..33274 | + | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| YPC_RS21190 () | 33850..34245 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| YPC_RS21195 () | 34369..35184 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| YPC_RS21200 () | 35263..35361 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| YPC_RS21205 () | 35587..36000 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| YPC_RS21210 () | 36006..37828 | + | 1823 | Protein_51 | Yop proteins translocation protein C | VF |
| YPC_RS21215 () | 37825..39084 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| YPC_RS21220 () | 39081..39281 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| YPC_RS21225 () | 39282..39545 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| YPC_RS21230 () | 39547..39894 | + | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| YPC_RS21235 () | 39891..40388 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| YPC_RS21240 () | 40389..40736 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| YPC_RS21245 () | 40743..41477 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| YPC_RS21250 () | 41477..42106 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| YPC_RS21255 () | 42052..42717 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| YPC_RS21260 () | 42942..43289 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| YPC_RS24035 () | 43837..44866 | + | 1030 | Protein_62 | IS3 family transposase | - |
| YPC_RS23555 () | 44885..45157 | + | 273 | Protein_63 | transposase | - |
| YPC_RS21280 () | 45378..46784 | - | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| YPC_RS21285 () | 47067..47300 | - | 234 | Protein_65 | transposase domain-containing protein | - |
| YPC_RS21290 () | 47303..47881 | + | 579 | Protein_66 | IS3 family transposase ISYpe1 | Transposase |
| YPC_RS21295 () | 48467..49333 | - | 867 | WP_002225474.1 | Effector protein YopJ | VF |
| YPC_RS21300 () | 49729..51926 | - | 2198 | Protein_68 | Protein kinase YpkA | VF |
| YPC_RS21305 () | 51934..52383 | - | 450 | WP_002229809.1 | hypothetical protein | VF |
| YPC_RS24040 () | 52639..52951 | - | 313 | Protein_70 | IS3 family transposase ISKpn37 | Transposase |
| YPC_RS23570 () | 53129..53368 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| YPC_RS21315 () | 54541..55419 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| YPC_RS21320 () | 55400..55474 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| YPC_RS21325 () | 55716..55970 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| YPC_RS21330 () | 56108..56356 | - | 249 | WP_002233137.1 | Phospholipase D | VF |
| YPC_RS23580 () | 56482..56790 | + | 309 | Protein_76 | DDE-type integrase/transposase/recombinase | - |
| YPC_RS24480 () | 56773..57180 | - | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| YPC_RS21340 () | 57204..57521 | - | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| YPC_RS21345 () | 57693..58151 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| YPC_RS21350 () | 58220..58489 | + | 270 | WP_042469136.1 | transposase | - |
| YPC_RS24850 () | 58587..58745 | - | 159 | Protein_81 | EamA family transporter | - |
| YPC_RS23590 () | 58815..60118 | - | 1304 | Protein_82 | Adhesin YadA | VF |
| YPC_RS21370 () | 60718..61068 | + | 351 | Protein_83 | IS3 family transposase IS1351 | Transposase |
| YPC_RS21375 () | 61101..63416 | - | 2316 | WP_014501242.1 | Tn3 family transposase ISEc63 | Transposase |
| YPC_RS21380 () | 63580..64131 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YPC_RS21385 () | 64150..64614 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| YPC_RS21390 () | 64753..65082 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| YPC_RS21400 () | 65182..66281 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| YPC_RS21405 () | 66429..66854 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| YPC_RS21410 () | 67231..67629 | - | 399 | Protein_90 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|