MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 68342 bp
Accession: NC_017153 Location: 1..68342 Organism: Yersinia pestis D106004 Replicon: plasmid pCD1
Accession: NC_017153 Location: 1..68342 Organism: Yersinia pestis D106004 Replicon: plasmid pCD1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YPD4_RS21415 () | 348..992 | + | 645 | Protein_1 | IS3 family transposase ISYen3 | Transposase |
| YPD4_RS21420 () | 1055..1447 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| YPD4_RS21425 () | 1641..2300 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| YPD4_RS21430 () | 2440..2739 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YPD4_RS21435 () | 2732..2974 | - | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| YPD4_RS24320 () | 3140..3432 | - | 293 | Protein_6 | IS6 family transposase ISEas1 | Transposase |
| YPD4_RS25265 () | 3518..3691 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| YPD4_RS25070 () | 3840..4076 | - | 237 | WP_154020274.1 | hypothetical protein | - |
| YPD4_RS21445 () | 4236..5201 | - | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| YPD4_RS21450 () | 5198..6364 | - | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| YPD4_RS24915 () | 7124..8269 | - | 1146 | Protein_11 | IS3 family transposase | - |
| YPD4_RS21470 () | 8376..9005 | - | 630 | WP_002229770.1 | hypothetical protein | - |
| YPD4_RS24330 () | 9151..9444 | - | 294 | Protein_13 | IS3 family transposase | - |
| YPD4_RS21475 () | 9603..10151 | - | 549 | WP_002213007.1 | hypothetical protein | VF |
| YPD4_RS21480 () | 10651..11619 | + | 969 | WP_014462177.1 | Cysteine protease YopT | VF |
| YPD4_RS21485 () | 11619..12017 | + | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| YPD4_RS23820 () | 12423..12704 | + | 282 | Protein_17 | DDE-type integrase/transposase/recombinase | - |
| YPD4_RS21495 () | 12722..13141 | + | 420 | WP_002222515.1 | hypothetical protein | - |
| YPD4_RS24920 () | 13669..13887 | - | 219 | Protein_19 | IS6 family transposase | - |
| YPD4_RS24925 () | 13890..14135 | + | 246 | WP_116442925.1 | transposase | - |
| YPD4_RS21500 () | 14017..14334 | + | 318 | Protein_21 | IS256 family transposase ISSod4 | Transposase |
| YPD4_RS21505 () | 14377..15606 | - | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| YPD4_RS21510 () | 16000..16209 | - | 210 | WP_002229781.1 | hypothetical protein | - |
| YPD4_RS24335 () | 16230..16867 | + | 638 | Protein_24 | IS6 family transposase | - |
| YPD4_RS21515 () | 17335..18255 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| YPD4_RS21520 () | 18274..19479 | - | 1206 | WP_002212985.1 | Protein YopB | VF |
| YPD4_RS21525 () | 19457..19963 | - | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| YPD4_RS21530 () | 19976..20956 | - | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| YPD4_RS21535 () | 20958..21245 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| YPD4_RS21540 () | 21287..21727 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| YPD4_RS21545 () | 21724..23838 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| YPD4_RS21550 () | 23825..24169 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| YPD4_RS21555 () | 24166..24534 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| YPD4_RS21560 () | 24531..24902 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| YPD4_RS21565 () | 24889..25167 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| YPD4_RS21570 () | 25148..26029 | - | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| YPD4_RS21575 () | 26227..27546 | + | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| YPD4_RS21580 () | 27543..28007 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| YPD4_RS21585 () | 28007..29374 | + | 1368 | WP_002212950.1 | hypothetical protein | VF |
| YPD4_RS21590 () | 29371..30294 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| YPD4_RS21595 () | 30291..30944 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| YPD4_RS21600 () | 30946..31212 | + | 267 | WP_002212945.1 | hypothetical protein | VF |
| YPD4_RS21605 () | 31209..31994 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| YPD4_RS21610 () | 31994..33058 | + | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| YPD4_RS21615 () | 33634..34029 | + | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| YPD4_RS21620 () | 34153..34968 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| YPD4_RS21625 () | 35047..35145 | + | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| YPD4_RS21630 () | 35371..35784 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| YPD4_RS21635 () | 35790..37614 | + | 1825 | Protein_49 | Yop proteins translocation protein C | VF |
| YPD4_RS21640 () | 37611..38870 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| YPD4_RS21645 () | 38867..39067 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| YPD4_RS21650 () | 39068..39331 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| YPD4_RS21655 () | 39333..39680 | + | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| YPD4_RS21660 () | 39677..40174 | + | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| YPD4_RS21665 () | 40175..40522 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| YPD4_RS21670 () | 40529..41263 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| YPD4_RS21675 () | 41263..41892 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| YPD4_RS21680 () | 41838..42503 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| YPD4_RS21685 () | 42728..43075 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| YPD4_RS24340 () | 43623..44652 | + | 1030 | Protein_60 | IS3 family transposase | - |
| YPD4_RS23850 () | 44671..44943 | + | 273 | Protein_61 | transposase | - |
| YPD4_RS21705 () | 45164..46570 | - | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| YPD4_RS21710 () | 46853..47086 | - | 234 | Protein_63 | transposase domain-containing protein | - |
| YPD4_RS21715 () | 47089..47667 | + | 579 | Protein_64 | IS3 family transposase ISYpe1 | Transposase |
| YPD4_RS21720 () | 48253..49119 | - | 867 | WP_002213287.1 | Effector protein YopJ | VF |
| YPD4_RS21725 () | 49515..51713 | - | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| YPD4_RS21730 () | 51721..52170 | - | 450 | WP_002229809.1 | hypothetical protein | VF |
| YPD4_RS24345 () | 52426..52738 | - | 313 | Protein_68 | IS3 family transposase ISKpn37 | Transposase |
| YPD4_RS23865 () | 52916..53155 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| YPD4_RS21740 () | 54328..55206 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| YPD4_RS21745 () | 55187..55261 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| YPD4_RS21750 () | 55503..55757 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| YPD4_RS21755 () | 55895..56143 | - | 249 | WP_002233137.1 | Phospholipase D | VF |
| YPD4_RS23875 () | 56269..56577 | + | 309 | Protein_74 | DDE-type integrase/transposase/recombinase | - |
| YPD4_RS24940 () | 56560..56967 | - | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| YPD4_RS21765 () | 56991..57308 | - | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| YPD4_RS21770 () | 57480..57938 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| YPD4_RS21775 () | 58007..58276 | + | 270 | WP_042469136.1 | transposase | - |
| YPD4_RS25270 () | 58374..58532 | - | 159 | Protein_79 | EamA family transporter | - |
| YPD4_RS23885 () | 58602..59905 | - | 1304 | Protein_80 | Adhesin YadA | VF |
| YPD4_RS21795 () | 60505..60855 | + | 351 | Protein_81 | IS3 family transposase IS1351 | Transposase |
| YPD4_RS21800 () | 60888..63203 | - | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| YPD4_RS21805 () | 63367..63918 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YPD4_RS21810 () | 63937..64401 | + | 465 | WP_002224338.1 | hypothetical protein | - |
| YPD4_RS21815 () | 64540..64869 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| YPD4_RS21825 () | 64969..66068 | + | 1100 | WP_086016640.1 | IS3 family transposase ISYpe1 | Transposase |
| YPD4_RS21830 () | 66216..66641 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| YPD4_RS21835 () | 67017..67415 | - | 399 | Protein_88 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|