MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 191799 bp
Accession: NC_017104 Location: 1..191799 Organism: Acetobacter pasteurianus IFO 3283-01-42C Replicon: plasmid pAPA42C_011
Accession: NC_017104 Location: 1..191799 Organism: Acetobacter pasteurianus IFO 3283-01-42C Replicon: plasmid pAPA42C_011
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APA42C_RS13280 () | 639..953 | + | 315 | WP_012813092.1 | integrase core domain-containing protein | - |
| APA42C_RS13285 () | 1020..1358 | - | 339 | WP_012813093.1 | UvrD-helicase domain-containing protein | - |
| APA42C_RS13290 () | 1476..2498 | + | 1023 | WP_041247965.1 | IS110 family transposase | - |
| APA42C_RS13295 () | 3042..4082 | - | 1041 | WP_012813095.1 | IS110 family transposase | - |
| APA42C_RS13300 () | 4115..4558 | - | 444 | WP_012813096.1 | recombinase family protein | - |
| APA42C_RS15770 () | 4794..5111 | + | 318 | Protein_6 | transposase | - |
| APA42C_RS13310 () | 5357..6835 | + | 1479 | WP_012813098.1 | mannitol dehydrogenase family protein | - |
| APA42C_RS13315 () | 6908..7621 | - | 714 | WP_012813099.1 | HAD family phosphatase | - |
| APA42C_RS13320 () | 8327..8710 | + | 384 | WP_012813100.1 | DUF2513 domain-containing protein | - |
| APA42C_RS16275 () | 9001..9441 | - | 441 | WP_157666435.1 | hypothetical protein | - |
| APA42C_RS13330 () | 9426..13385 | + | 3960 | WP_012813102.1 | DNA damage-inducible protein | - |
| APA42C_RS13335 () | 13970..14314 | + | 345 | WP_041633164.1 | hypothetical protein | - |
| APA42C_RS13340 () | 14372..15757 | + | 1386 | WP_082179774.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS13345 () | 16032..16460 | + | 429 | WP_012813104.1 | hypothetical protein | - |
| APA42C_RS13350 () | 16677..18047 | - | 1371 | WP_012813105.1 | hypothetical protein | - |
| APA42C_RS13360 () | 18958..20343 | - | 1386 | WP_012813107.1 | IS1380 family transposase | - |
| APA42C_RS13365 () | 20552..21010 | + | 459 | WP_012813108.1 | hypothetical protein | - |
| APA42C_RS13375 () | 21076..22163 | + | 1088 | WP_148194248.1 | IS3 family transposase | - |
| APA42C_RS13380 () | 22224..22886 | + | 663 | WP_012813110.1 | hypothetical protein | - |
| APA42C_RS13385 () | 22900..25275 | + | 2376 | WP_012813111.1 | DotA/TraY family protein | - |
| APA42C_RS13390 () | 25293..25694 | + | 402 | WP_012813112.1 | hypothetical protein | - |
| APA42C_RS13395 () | 26101..26721 | - | 621 | WP_012813113.1 | hypothetical protein | - |
| APA42C_RS13400 () | 26718..27725 | - | 1008 | WP_012813114.1 | thiol:disulfide interchange protein | - |
| APA42C_RS13405 () | 28613..29998 | + | 1386 | WP_012812390.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS13410 () | 30213..30710 | + | 498 | WP_012813116.1 | tyrosine-type recombinase/integrase | - |
| APA42C_RS13415 () | 31135..32058 | + | 924 | WP_012813117.1 | plasmid replication initiator RepA | - |
| APA42C_RS13420 () | 32269..33324 | + | 1056 | WP_012813118.1 | DUF1870 family protein | - |
| APA42C_RS13425 () | 33311..34183 | + | 873 | WP_012813119.1 | ParB/RepB/Spo0J family partition protein | - |
| APA42C_RS13430 () | 34662..37328 | + | 2667 | Protein_29 | lactate dehydrogenase | - |
| APA42C_RS13435 () | 37394..38328 | + | 935 | Protein_30 | IS5 family transposase | - |
| APA42C_RS13440 () | 38442..38720 | + | 279 | WP_012813123.1 | HU family DNA-binding protein | - |
| APA42C_RS13445 () | 38729..39031 | + | 303 | WP_041633166.1 | WGR domain-containing protein | - |
| APA42C_RS13450 () | 39117..39425 | + | 309 | WP_012813124.1 | hypothetical protein | - |
| APA42C_RS13455 () | 39422..40018 | + | 597 | WP_012813125.1 | relaxase domain-containing protein | - |
| APA42C_RS13460 () | 40076..40504 | + | 429 | Protein_35 | transposase | - |
| APA42C_RS13465 () | 40595..41980 | + | 1386 | WP_012813126.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS13470 () | 42264..43649 | + | 1386 | WP_012812390.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS13475 () | 44011..44613 | - | 603 | Protein_38 | IS5/IS1182 family transposase | - |
| APA42C_RS13480 () | 44964..45557 | + | 594 | WP_012813128.1 | TetR/AcrR family transcriptional regulator | - |
| APA42C_RS13485 () | 45645..46802 | + | 1158 | WP_003631147.1 | iron-containing alcohol dehydrogenase | - |
| APA42C_RS13490 () | 46887..48278 | + | 1392 | WP_003631146.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| APA42C_RS13500 () | 48525..49484 | - | 960 | Protein_42 | IS481 family transposase | - |
| APA42C_RS13505 () | 49678..50928 | - | 1251 | WP_012812328.1 | IS701-like element IS1452 family transposase | - |
| APA42C_RS13510 () | 51242..51691 | - | 450 | WP_012813131.1 | phosphate-starvation-inducible PsiE family protein | - |
| APA42C_RS13515 () | 51728..53050 | - | 1323 | WP_012813132.1 | outer membrane beta-barrel protein | - |
| APA42C_RS15800 () | 53326..53415 | + | 90 | WP_082179775.1 | potassium-transporting ATPase subunit F | - |
| APA42C_RS13520 () | 53418..55124 | + | 1707 | WP_012813133.1 | potassium-transporting ATPase subunit KdpA | - |
| APA42C_RS13525 () | 55139..57247 | + | 2109 | WP_012813134.1 | potassium-transporting ATPase subunit KdpB | - |
| APA42C_RS13530 () | 57258..57881 | + | 624 | WP_012813135.1 | potassium-transporting ATPase subunit KdpC | - |
| APA42C_RS13535 () | 57881..60568 | + | 2688 | WP_012813136.1 | sensor histidine kinase KdpD | - |
| APA42C_RS13540 () | 60565..61248 | + | 684 | WP_012813137.1 | response regulator transcription factor | - |
| APA42C_RS13545 () | 61506..62768 | + | 1263 | WP_012813138.1 | sodium:proton antiporter | - |
| APA42C_RS13550 () | 63073..63795 | - | 723 | WP_012813139.1 | hypothetical protein | - |
| APA42C_RS13555 () | 63967..65352 | - | 1386 | WP_082179776.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS13560 () | 65837..66799 | + | 963 | WP_012813141.1 | AraC family transcriptional regulator | - |
| APA42C_RS13565 () | 66789..67619 | - | 831 | WP_012813142.1 | sulfotransferase | - |
| APA42C_RS13570 () | 68164..70137 | + | 1974 | WP_012813143.1 | acyltransferase family protein | - |
| APA42C_RS13575 () | 70489..71574 | + | 1086 | WP_012813144.1 | winged helix-turn-helix domain-containing protein | - |
| APA42C_RS13580 () | 71587..72633 | - | 1047 | WP_012813145.1 | Fic family protein | - |
| APA42C_RS13585 () | 72630..72986 | - | 357 | WP_012813146.1 | hypothetical protein | - |
| APA42C_RS13590 () | 73078..74394 | - | 1317 | WP_012813147.1 | replication protein C | - |
| APA42C_RS15815 () | 75162..75353 | - | 192 | Protein_62 | DUF2312 domain-containing protein | - |
| APA42C_RS13595 () | 75535..76920 | - | 1386 | WP_012813149.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS13600 () | 77328..79796 | + | 2469 | WP_012813150.1 | TonB-dependent receptor | - |
| APA42C_RS13605 () | 79809..80918 | + | 1110 | WP_012813151.1 | glycerophosphodiester phosphodiesterase | - |
| APA42C_RS13610 () | 81096..81971 | - | 876 | WP_012813152.1 | EamA family transporter | - |
| APA42C_RS13615 () | 82164..83054 | + | 891 | WP_012813153.1 | AraC family transcriptional regulator | - |
| APA42C_RS13620 () | 83295..83717 | - | 423 | WP_041633201.1 | CrcB family protein | - |
| APA42C_RS13625 () | 83693..84049 | - | 357 | Protein_69 | transposase | - |
| APA42C_RS16280 () | 84143..84289 | + | 147 | Protein_70 | hypothetical protein | - |
| APA42C_RS13630 () | 84444..84575 | + | 132 | Protein_71 | S24 family peptidase | - |
| APA42C_RS13635 () | 84663..85597 | + | 935 | Protein_72 | IS5 family transposase | - |
| APA42C_RS13640 () | 86138..86752 | + | 615 | WP_012813156.1 | hypothetical protein | - |
| APA42C_RS16145 () | 86730..86993 | - | 264 | WP_124306776.1 | hypothetical protein | - |
| APA42C_RS13650 () | 87186..87821 | + | 636 | WP_012813157.1 | hypothetical protein | - |
| APA42C_RS15820 () | 87776..88354 | - | 579 | WP_157666438.1 | NERD domain-containing protein | - |
| APA42C_RS13655 () | 88925..90310 | - | 1386 | WP_012813158.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS13660 () | 90402..90734 | - | 333 | Protein_78 | transposase | - |
| APA42C_RS16490 () | 91372..91451 | - | 80 | Protein_79 | IS5/IS1182 family transposase | - |
| APA42C_RS13665 () | 91584..91916 | + | 333 | WP_012813160.1 | type II toxin-antitoxin system PrlF family antitoxin | - |
| APA42C_RS13670 () | 91919..92410 | + | 492 | WP_012813161.1 | type II toxin-antitoxin system YhaV family toxin | - |
| APA42C_RS13675 () | 92845..93117 | - | 273 | WP_012813162.1 | hypothetical protein | - |
| APA42C_RS13680 () | 93491..94876 | + | 1386 | WP_012812390.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS13685 () | 95288..96084 | + | 797 | Protein_84 | IS5 family transposase | - |
| APA42C_RS13690 () | 96439..97812 | - | 1374 | WP_012813165.1 | Nramp family divalent metal transporter | - |
| APA42C_RS13695 () | 97998..98513 | + | 516 | WP_012813166.1 | manganese-binding transcriptional regulator MntR | - |
| APA42C_RS13700 () | 98500..100230 | - | 1731 | WP_012813167.1 | ABC transporter ATP-binding protein/permease | - |
| APA42C_RS13705 () | 100781..102373 | + | 1593 | WP_012813168.1 | carbohydrate porin | - |
| APA42C_RS13710 () | 102519..102737 | + | 219 | WP_003627697.1 | CbtB-domain containing protein | - |
| APA42C_RS13715 () | 102761..103495 | + | 735 | WP_012813169.1 | CbtA family protein | - |
| APA42C_RS13720 () | 104298..104675 | + | 378 | WP_012813170.1 | hypothetical protein | - |
| APA42C_RS15825 () | 105160..105426 | + | 267 | WP_082179784.1 | hypothetical protein | - |
| APA42C_RS13725 () | 105426..105785 | + | 360 | WP_012813171.1 | hypothetical protein | - |
| APA42C_RS13730 () | 105936..106862 | - | 927 | Protein_94 | Rieske 2Fe-2S domain-containing protein | - |
| APA42C_RS13745 () | 107800..109050 | - | 1251 | WP_012812328.1 | IS701-like element IS1452 family transposase | - |
| APA42C_RS13750 () | 109215..109916 | - | 702 | Protein_97 | IS5-like element ISGdi2 family transposase | - |
| APA42C_RS16155 () | 111219..111347 | - | 129 | Protein_99 | IS5/IS1182 family transposase | - |
| APA42C_RS13765 () | 111532..112488 | + | 957 | WP_012813177.1 | alpha/beta hydrolase | - |
| APA42C_RS13770 () | 112540..112782 | - | 243 | WP_012813178.1 | hypothetical protein | - |
| APA42C_RS13775 () | 112891..113970 | + | 1080 | WP_012813179.1 | IS5 family transposase | - |
| APA42C_RS13780 () | 113979..114314 | + | 336 | WP_012813180.1 | hypothetical protein | - |
| APA42C_RS13785 () | 114611..117325 | + | 2715 | WP_012813181.1 | CRISPR-associated helicase/endonuclease Cas3 | - |
| APA42C_RS13790 () | 117387..119042 | + | 1656 | WP_012813182.1 | type I-E CRISPR-associated protein Cse1/CasA | - |
| APA42C_RS13795 () | 119042..119602 | + | 561 | WP_012813183.1 | type I-E CRISPR-associated protein Cse2/CasB | - |
| APA42C_RS13800 () | 119623..120681 | + | 1059 | WP_012813184.1 | type I-E CRISPR-associated protein Cas7/Cse4/CasC | - |
| APA42C_RS13805 () | 120687..121466 | + | 780 | WP_012813185.1 | type I-E CRISPR-associated protein Cas5/CasD | - |
| APA42C_RS13810 () | 121466..122155 | + | 690 | WP_012813186.1 | type I-E CRISPR-associated protein Cas6/Cse3/CasE | - |
| APA42C_RS13815 () | 122168..123127 | + | 960 | WP_012813187.1 | type I-E CRISPR-associated endonuclease Cas1e | - |
| APA42C_RS13820 () | 123108..123449 | + | 342 | WP_012813188.1 | type I-E CRISPR-associated endoribonuclease Cas2 | - |
| APA42C_RS13825 () | 124969..125928 | - | 960 | WP_041633306.1 | IS481 family transposase | - |
| APA42C_RS13830 () | 125986..126366 | - | 381 | WP_003627483.1 | hypothetical protein | - |
| APA42C_RS13835 () | 126354..126638 | - | 285 | WP_035362983.1 | hypothetical protein | - |
| APA42C_RS13840 () | 126948..127430 | + | 483 | WP_012813190.1 | hypothetical protein | - |
| APA42C_RS13855 () | 129076..129525 | - | 450 | WP_012813192.1 | phosphate-starvation-inducible PsiE family protein | - |
| APA42C_RS13860 () | 129662..129847 | + | 186 | Protein_118 | IS5/IS1182 family transposase | - |
| APA42C_RS13865 () | 130035..131420 | - | 1386 | WP_012812390.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS13870 () | 131486..132067 | + | 582 | WP_012813194.1 | group III truncated hemoglobin | - |
| APA42C_RS13875 () | 132095..132394 | + | 300 | WP_012813195.1 | DUF1971 domain-containing protein | - |
| APA42C_RS13880 () | 132533..133366 | - | 834 | Protein_122 | IS5 family transposase | - |
| APA42C_RS13895 () | 134643..135005 | + | 363 | WP_012813198.1 | hypothetical protein | - |
| APA42C_RS13900 () | 135219..135479 | + | 261 | WP_003618686.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| APA42C_RS13905 () | 135476..135769 | + | 294 | WP_003618711.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| APA42C_RS13910 () | 135971..136954 | - | 984 | WP_012813200.1 | Abi family protein | - |
| APA42C_RS13915 () | 137212..139011 | - | 1800 | WP_012813201.1 | oleate hydratase | - |
| APA42C_RS13920 () | 139057..139644 | - | 588 | Protein_129 | DUF1275 domain-containing protein | - |
| APA42C_RS13925 () | 139630..139875 | + | 246 | Protein_130 | hypothetical protein | - |
| APA42C_RS13930 () | 140239..140946 | - | 708 | Protein_131 | transposase | - |
| APA42C_RS13935 () | 141137..142522 | - | 1386 | WP_012813204.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS13940 () | 142616..142987 | - | 372 | Protein_133 | transposase | - |
| APA42C_RS13945 () | 143119..144321 | - | 1203 | WP_006117547.1 | porin | - |
| APA42C_RS16170 () | 144364..144606 | - | 243 | WP_124307076.1 | hypothetical protein | - |
| APA42C_RS13950 () | 144946..146331 | + | 1386 | WP_012813149.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS16495 () | 146517..146759 | + | 243 | Protein_137 | IS5/IS1182 family transposase | - |
| APA42C_RS13955 () | 147042..149264 | - | 2223 | WP_012813206.1 | TonB-dependent receptor | - |
| APA42C_RS13960 () | 149341..149871 | - | 531 | WP_012813207.1 | hypothetical protein | - |
| APA42C_RS13970 () | 150200..151192 | + | 993 | WP_012813208.1 | TonB family protein | - |
| APA42C_RS13975 () | 151238..152488 | + | 1251 | WP_012812328.1 | IS701-like element IS1452 family transposase | - |
| APA42C_RS13980 () | 152851..153930 | + | 1080 | WP_006115564.1 | IS5 family transposase | - |
| APA42C_RS15850 () | 154161..154379 | - | 219 | WP_170315285.1 | WGR domain-containing protein | - |
| APA42C_RS13985 () | 154458..154736 | - | 279 | WP_006115563.1 | HU family DNA-binding protein | - |
| APA42C_RS16315 () | 156178..156363 | - | 186 | WP_041633309.1 | hypothetical protein | - |
| APA42C_RS14005 () | 156448..157263 | + | 816 | WP_012813210.1 | hypothetical protein | - |
| APA42C_RS14010 () | 157276..157680 | + | 405 | WP_006115557.1 | hypothetical protein | - |
| APA42C_RS14015 () | 157737..158057 | - | 321 | WP_012813211.1 | hypothetical protein | - |
| APA42C_RS14020 () | 158087..158287 | - | 201 | WP_012813212.1 | hypothetical protein | - |
| APA42C_RS14025 () | 158344..158673 | - | 330 | WP_012813213.1 | endoribonuclease MazF | Toxin Detail |
| APA42C_RS14030 () | 158675..158929 | - | 255 | WP_006115554.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| APA42C_RS14035 () | 159028..159336 | - | 309 | WP_006115553.1 | PIN domain-containing protein | Toxin Detail |
| APA42C_RS14040 () | 159333..159605 | - | 273 | WP_006115552.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| APA42C_RS14045 () | 159935..160306 | - | 372 | Protein_155 | integrase core domain-containing protein | - |
| APA42C_RS14050 () | 160400..161785 | + | 1386 | WP_012813126.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS15865 () | 161917..162368 | + | 452 | Protein_157 | recombinase family protein | - |
| APA42C_RS14055 () | 162682..163455 | - | 774 | WP_003631418.1 | TSUP family transporter | - |
| APA42C_RS14060 () | 163647..164231 | + | 585 | Protein_159 | IS701 family transposase | - |
| APA42C_RS14065 () | 164406..165791 | - | 1386 | WP_012812390.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS14070 () | 165876..166313 | + | 438 | Protein_161 | SDR family oxidoreductase | - |
| APA42C_RS14075 () | 166354..168126 | - | 1773 | WP_012813217.1 | AMP-binding protein | - |
| APA42C_RS14080 () | 168141..169388 | - | 1248 | WP_035366434.1 | MSMEG_0569 family flavin-dependent oxidoreductase | - |
| APA42C_RS14085 () | 169405..169692 | - | 288 | WP_020936672.1 | MSMEG_0570 family nitrogen starvation response protein | - |
| APA42C_RS14090 () | 169680..170858 | - | 1179 | WP_012813219.1 | MSMEG_0565 family glycosyltransferase | - |
| APA42C_RS14095 () | 170855..171826 | - | 972 | WP_003630850.1 | sll0787 family AIR synthase-like protein | - |
| APA42C_RS14100 () | 171823..172386 | - | 564 | WP_012813220.1 | GNAT family N-acetyltransferase | - |
| APA42C_RS14105 () | 172383..173492 | - | 1110 | WP_012813221.1 | MSMEG_0568 family radical SAM protein | - |
| APA42C_RS14110 () | 173489..174463 | - | 975 | WP_012813222.1 | Nit6803 family nitriliase | - |
| APA42C_RS14115 () | 174488..174970 | - | 483 | WP_012813223.1 | MSMEG_0572 family nitrogen starvation response protein | - |
| APA42C_RS14120 () | 175311..176714 | - | 1404 | WP_012813224.1 | PLP-dependent aminotransferase family protein | - |
| APA42C_RS14125 () | 177149..177772 | + | 624 | WP_012813225.1 | alpha/beta hydrolase | - |
| APA42C_RS14130 () | 177776..178654 | - | 879 | WP_012813226.1 | LysR family transcriptional regulator | - |
| APA42C_RS14135 () | 178858..180378 | + | 1521 | WP_041633310.1 | MFS transporter | - |
| APA42C_RS15875 () | 180702..180911 | - | 210 | Protein_175 | IS701 family transposase | - |
| APA42C_RS14140 () | 181008..182393 | + | 1386 | WP_012813229.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS14145 () | 182689..184074 | + | 1386 | WP_012813230.1 | IS1380-like element IS1380A family transposase | - |
| APA42C_RS14150 () | 184217..184657 | - | 441 | WP_082179782.1 | DNA helicase II | - |
| APA42C_RS14155 () | 184771..186990 | - | 2220 | WP_012813232.1 | ATP-dependent RecD-like DNA helicase | - |
| APA42C_RS14160 () | 186987..189212 | - | 2226 | WP_012813233.1 | site-specific integrase | - |
| APA42C_RS15880 () | 189217..189699 | - | 483 | Protein_181 | site-specific integrase | - |
| APA42C_RS15885 () | 189797..190382 | + | 586 | Protein_182 | IS5 family transposase | - |
| APA42C_RS14180 () | 190464..191221 | + | 758 | Protein_183 | IS3 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|