MGE detailed information
MGE type: Conjugative plasmid MGE length: 128415 bp
Accession: NC_016108 Location: 1..128415 Organism: Methylomicrobium alcaliphilum 20Z Replicon: plasmid MEALZ_p
Accession: NC_016108 Location: 1..128415 Organism: Methylomicrobium alcaliphilum 20Z Replicon: plasmid MEALZ_p
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MEALZ_RS21110 () | 590..1276 | + | 687 | WP_162473025.1 | hypothetical protein | - |
| MEALZ_RS19940 () | 2001..2618 | + | 618 | WP_046061743.1 | histidine phosphatase family protein | - |
| MEALZ_RS19945 () | 2726..3151 | + | 426 | WP_014133076.1 | hypothetical protein | - |
| MEALZ_RS19950 () | 3272..5800 | + | 2529 | WP_014133077.1 | Fe(2+) transporter FeoB | VF |
| MEALZ_RS19955 () | 5804..7804 | + | 2001 | WP_014133078.1 | cadmium-translocating P-type ATPase | - |
| MEALZ_RS19960 () | 7836..8570 | + | 735 | WP_014133079.1 | ZIP family metal transporter | - |
| MEALZ_RS19965 () | 8649..9395 | + | 747 | WP_014133080.1 | 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | - |
| MEALZ_RS19970 () | 9392..9778 | - | 387 | WP_046061724.1 | c-type cytochrome | - |
| MEALZ_RS19975 () | 9936..10310 | - | 375 | WP_014133082.1 | hypothetical protein | - |
| MEALZ_RS19980 () | 10359..10865 | - | 507 | WP_014133083.1 | hypothetical protein | - |
| MEALZ_RS19985 () | 10914..12314 | - | 1401 | WP_014133084.1 | cytochrome-c peroxidase | - |
| MEALZ_RS22450 () | 12469..12882 | - | 414 | Protein_12 | hypothetical protein | - |
| MEALZ_RS19995 () | 13117..13359 | + | 243 | WP_046061726.1 | hypothetical protein | - |
| MEALZ_RS22455 () | 13431..13613 | - | 183 | WP_048481416.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| MEALZ_RS21240 () | 13597..14340 | - | 744 | WP_084685663.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| MEALZ_RS20005 () | 14574..16418 | + | 1845 | WP_048481417.1 | Tn3 family transposase TnBth2 | Transposase |
| MEALZ_RS20010 () | 16436..17986 | - | 1551 | WP_084685586.1 | IS66 family transposase ISMasp4 | Transposase |
| MEALZ_RS20015 () | 18082..19251 | + | 1170 | Protein_18 | Tn3 family transposase TnBth2 | Transposase |
| MEALZ_RS20020 () | 19251..20270 | + | 1020 | WP_046061727.1 | IS4 family transposase ISPpr4 | Transposase |
| MEALZ_RS20025 () | 20429..21310 | - | 882 | WP_014133086.1 | replication initiation protein | - |
| MEALZ_RS20030 () | 21758..22615 | - | 858 | WP_014133087.1 | replication initiation protein | - |
| MEALZ_RS20035 () | 23389..23703 | + | 315 | WP_084685665.1 | DUF1778 domain-containing protein | - |
| MEALZ_RS20040 () | 23704..24228 | + | 525 | WP_014133089.1 | GNAT family N-acetyltransferase | - |
| MEALZ_RS20045 () | 24571..25596 | - | 1026 | WP_014133090.1 | DNA-binding protein | - |
| MEALZ_RS20050 () | 25771..26820 | - | 1050 | WP_014133091.1 | ParB/RepB/Spo0J family partition protein | - |
| MEALZ_RS20055 () | 26817..27587 | - | 771 | WP_014133092.1 | ParA family protein | - |
| MEALZ_RS20060 () | 27584..27889 | - | 306 | WP_017842850.1 | hypothetical protein | - |
| MEALZ_RS20065 () | 28002..28337 | - | 336 | WP_014133093.1 | hypothetical protein | - |
| MEALZ_RS20070 () | 29003..30022 | - | 1020 | WP_014133094.1 | replication initiator protein A | - |
| MEALZ_RS20075 () | 30202..30564 | + | 363 | WP_014133095.1 | transcriptional regulator | - |
| MEALZ_RS20080 () | 30792..31754 | + | 963 | WP_014133096.1 | Type IV secretion system protein PtlH | VF |
| MEALZ_RS20085 () | 31766..32188 | + | 423 | WP_014133097.1 | conjugal transfer system pilin TrbC | - |
| MEALZ_RS20090 () | 32190..32501 | + | 312 | WP_014133098.1 | hypothetical protein | VF |
| MEALZ_RS20095 () | 32501..35041 | + | 2541 | WP_046061750.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| MEALZ_RS20100 () | 35038..35778 | + | 741 | WP_014133100.1 | conjugal transfer protein TrbF | - |
| MEALZ_RS20105 () | 35799..36695 | + | 897 | WP_014133101.1 | P-type conjugative transfer protein TrbG | - |
| MEALZ_RS20110 () | 36700..37131 | + | 432 | WP_014133102.1 | TrbH protein of DNA transfer system | - |
| MEALZ_RS20115 () | 37135..38493 | + | 1359 | WP_014133103.1 | TrbI/VirB10 family protein | - |
| MEALZ_RS20120 () | 38591..39385 | + | 795 | WP_046061751.1 | P-type conjugative transfer protein TrbJ | - |
| MEALZ_RS20125 () | 39414..39650 | + | 237 | WP_048481418.1 | entry exclusion lipoprotein TrbK | - |
| MEALZ_RS20130 () | 39667..41262 | + | 1596 | WP_014133105.1 | P-type conjugative transfer protein TrbL | - |
| MEALZ_RS20135 () | 41277..41897 | + | 621 | WP_014133106.1 | hypothetical protein | VF |
| MEALZ_RS22890 () | 41952..42119 | - | 168 | WP_162473026.1 | hypothetical protein | - |
| MEALZ_RS22460 () | 42347..42637 | + | 291 | WP_014133107.1 | hypothetical protein | - |
| MEALZ_RS20140 () | 42915..43337 | + | 423 | WP_046061729.1 | hypothetical protein | - |
| MEALZ_RS20145 () | 43334..43912 | + | 579 | WP_014133109.1 | hypothetical protein | - |
| MEALZ_RS20150 () | 43956..44498 | + | 543 | WP_046061730.1 | hypothetical protein | - |
| MEALZ_RS21115 () | 46081..46539 | + | 459 | WP_014133110.1 | putative DNA binding domain-containing protein | - |
| MEALZ_RS20160 () | 46533..46739 | + | 207 | WP_014133111.1 | hypothetical protein | - |
| MEALZ_RS20165 () | 47208..47996 | + | 789 | WP_046061754.1 | AAA family ATPase | - |
| MEALZ_RS20170 () | 48009..48908 | + | 900 | WP_014133113.1 | ParB/RepB/Spo0J family partition protein | - |
| MEALZ_RS22465 () | 49182..49472 | + | 291 | WP_084685668.1 | hypothetical protein | - |
| MEALZ_RS20190 () | 50425..51351 | + | 927 | WP_014133114.1 | hypothetical protein | - |
| MEALZ_RS20195 () | 52221..52916 | - | 696 | WP_014133116.1 | retroviral-like aspartic protease family protein | - |
| MEALZ_RS20200 () | 52917..53216 | - | 300 | WP_014133117.1 | hypothetical protein | - |
| MEALZ_RS20205 () | 53303..53917 | - | 615 | WP_014133118.1 | hypothetical protein | - |
| MEALZ_RS20210 () | 53980..54297 | - | 318 | WP_014133119.1 | hypothetical protein | - |
| MEALZ_RS20215 () | 54646..55578 | + | 933 | WP_014133120.1 | IS91 family transposase ISShvi3 | Transposase |
| MEALZ_RS20220 () | 55587..55835 | + | 249 | WP_014133121.1 | WGR domain-containing protein | - |
| MEALZ_RS20225 () | 56018..56218 | + | 201 | WP_046061734.1 | helix-turn-helix domain-containing protein | - |
| MEALZ_RS20230 () | 56215..59487 | + | 3273 | WP_014133122.1 | DEAD/DEAH box helicase family protein | - |
| MEALZ_RS20235 () | 59493..60194 | + | 702 | WP_014133123.1 | DUF4391 domain-containing protein | - |
| MEALZ_RS20240 () | 60194..62173 | + | 1980 | WP_046061757.1 | site-specific DNA-methyltransferase | - |
| MEALZ_RS20245 () | 62186..65341 | + | 3156 | WP_014133125.1 | DEAD/DEAH box helicase family protein | - |
| MEALZ_RS20250 () | 65409..67517 | + | 2109 | WP_014133126.1 | AAA family ATPase | - |
| MEALZ_RS20255 () | 67629..68834 | + | 1206 | WP_014133127.1 | hypothetical protein | - |
| MEALZ_RS20260 () | 68821..70587 | + | 1767 | WP_014133128.1 | ATP-binding protein | - |
| MEALZ_RS20265 () | 70618..71874 | + | 1257 | WP_014133129.1 | DNA repair exonuclease | - |
| MEALZ_RS20270 () | 71882..75331 | + | 3450 | WP_014133130.1 | YhaN family protein | - |
| MEALZ_RS20275 () | 75885..76442 | + | 558 | WP_014133132.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| MEALZ_RS20280 () | 77171..78184 | + | 1014 | WP_014133133.1 | hypothetical protein | - |
| MEALZ_RS20285 () | 78320..79093 | + | 774 | WP_014133134.1 | hypothetical protein | - |
| MEALZ_RS20290 () | 79458..79670 | - | 213 | WP_014133135.1 | hypothetical protein | - |
| MEALZ_RS23015 () | 79948..80091 | - | 144 | WP_014133136.1 | hypothetical protein | - |
| MEALZ_RS20295 () | 80262..80645 | + | 384 | WP_084685671.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| MEALZ_RS20300 () | 80650..81030 | - | 381 | WP_014133138.1 | DUF2513 domain-containing protein | - |
| MEALZ_RS20305 () | 81265..82155 | - | 891 | WP_014133139.1 | hypothetical protein | - |
| MEALZ_RS20310 () | 82211..85171 | - | 2961 | WP_014133140.1 | UvrD-helicase domain-containing protein | - |
| MEALZ_RS20315 () | 85384..85710 | - | 327 | WP_014133141.1 | hypothetical protein | - |
| MEALZ_RS20320 () | 86130..86552 | - | 423 | WP_014133142.1 | hypothetical protein | - |
| MEALZ_RS20325 () | 86667..87524 | + | 858 | WP_046061759.1 | 3'-5' exonuclease | - |
| MEALZ_RS22900 () | 87611..87778 | - | 168 | WP_014133144.1 | hypothetical protein | - |
| MEALZ_RS20330 () | 87981..88616 | + | 636 | WP_014133145.1 | hypothetical protein | - |
| MEALZ_RS20335 () | 88736..89350 | + | 615 | WP_014133146.1 | hypothetical protein | - |
| MEALZ_RS20340 () | 89354..90073 | - | 720 | WP_014133147.1 | metal-dependent hydrolase | - |
| MEALZ_RS20345 () | 90229..90444 | + | 216 | WP_084685675.1 | hypothetical protein | - |
| MEALZ_RS20350 () | 90548..91516 | - | 969 | WP_014133149.1 | tyrosine-type recombinase/integrase | - |
| MEALZ_RS20355 () | 91710..91982 | + | 273 | WP_046061738.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| MEALZ_RS20360 () | 91970..92263 | + | 294 | WP_014133151.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| MEALZ_RS20365 () | 92493..94838 | - | 2346 | WP_014133152.1 | S8 family peptidase | - |
| MEALZ_RS20370 () | 94828..95991 | - | 1164 | WP_014133153.1 | AAA family ATPase | - |
| MEALZ_RS20375 () | 96188..96730 | + | 543 | WP_048481421.1 | hypothetical protein | - |
| MEALZ_RS20385 () | 97279..98277 | - | 999 | WP_014133155.1 | hypothetical protein | - |
| MEALZ_RS20390 () | 98497..106560 | - | 8064 | Protein_94 | strawberry notch family protein | - |
| MEALZ_RS20395 () | 106563..106781 | - | 219 | WP_014133158.1 | hypothetical protein | - |
| MEALZ_RS20400 () | 106789..108858 | - | 2070 | WP_014133159.1 | DNA topoisomerase III | - |
| MEALZ_RS20405 () | 108868..109401 | - | 534 | WP_014133160.1 | conjugative transfer signal peptidase TraF | - |
| MEALZ_RS20410 () | 109398..111299 | - | 1902 | WP_014133161.1 | Conjugal transfer protein TraG | VF |
| MEALZ_RS20415 () | 111304..113505 | - | 2202 | WP_014133162.1 | Protein TraI | Relaxase |
| MEALZ_RS20420 () | 113540..113908 | - | 369 | WP_014133163.1 | conjugal transfer transcriptional regulator TraJ | - |
| MEALZ_RS20425 () | 114240..114626 | + | 387 | WP_014133165.1 | TraK family protein | - |
| MEALZ_RS20430 () | 114626..115351 | + | 726 | WP_014133166.1 | protein traL | - |
| MEALZ_RS20435 () | 115351..115791 | + | 441 | WP_014133167.1 | protein traM | - |
| MEALZ_RS20440 () | 115828..116547 | - | 720 | WP_046061763.1 | hypothetical protein | - |
| MEALZ_RS20445 () | 116577..116924 | - | 348 | WP_014133169.1 | hypothetical protein | - |
| MEALZ_RS20450 () | 117707..119203 | + | 1497 | Protein_106 | ISNCY family transposase ISEnu1 | Transposase |
| MEALZ_RS20455 () | 120096..120287 | + | 192 | WP_046061740.1 | hypothetical protein | - |
| MEALZ_RS20460 () | 120287..121870 | + | 1584 | WP_046061741.1 | IS21 family transposase ISMtsp8 | Transposase |
| MEALZ_RS20465 () | 121863..122621 | + | 759 | WP_014133173.1 | IS21 family transposase IS712 | Transposase |
| MEALZ_RS20470 () | 122618..122809 | + | 192 | WP_014133174.1 | hypothetical protein | - |
| MEALZ_RS20475 () | 123048..125453 | + | 2406 | WP_014133175.1 | phosphoketolase family protein | - |
| MEALZ_RS20480 () | 125608..126636 | + | 1029 | WP_046061764.1 | fructose-bisphosphate aldolase class I | - |
| MEALZ_RS20485 () | 126725..127180 | - | 456 | WP_014133177.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|