MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 47014 bp
Accession: NC_015977 Location: 2232358..2279371 Organism: Roseburia hominis A2-183 Replicon: chromosome
Accession: NC_015977 Location: 2232358..2279371 Organism: Roseburia hominis A2-183 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RHOM_RS09980 () | 2228875..2229699 | - | 825 | WP_014080193.1 | carbohydrate ABC transporter permease | - |
| RHOM_RS09985 () | 2229696..2230598 | - | 903 | WP_118098152.1 | sugar ABC transporter permease | - |
| RHOM_RS09990 () | 2230652..2231932 | - | 1281 | WP_143761825.1 | ABC transporter substrate-binding protein | - |
| RHOM_RS09995 () | 2232358..2234040 | - | 1683 | WP_014080196.1 | hypothetical protein ; Integrase | Integrase |
| RHOM_RS10000 () | 2234159..2234425 | - | 267 | WP_014080197.1 | hypothetical protein | - |
| RHOM_RS10005 () | 2234895..2235305 | - | 411 | WP_014080198.1 | sigma-70 family RNA polymerase sigma factor | - |
| RHOM_RS10010 () | 2235752..2237560 | - | 1809 | WP_014080199.1 | ABC transporter permease | - |
| RHOM_RS10015 () | 2237557..2238240 | - | 684 | WP_014080200.1 | hypothetical protein | VF |
| RHOM_RS10020 () | 2238352..2239389 | - | 1038 | WP_014080201.1 | HAMP domain-containing histidine kinase | - |
| RHOM_RS10025 () | 2239398..2240084 | - | 687 | WP_014080202.1 | hypothetical protein | VF |
| RHOM_RS10030 () | 2240077..2240265 | - | 189 | WP_014080203.1 | helix-turn-helix domain-containing protein | - |
| RHOM_RS10035 () | 2240416..2240775 | + | 360 | WP_014080204.1 | helix-turn-helix domain-containing protein | - |
| RHOM_RS10040 () | 2240977..2242323 | - | 1347 | WP_044024667.1 | relaxase/mobilization nuclease domain-containing protein | - |
| RHOM_RS10045 () | 2242482..2242829 | - | 348 | WP_014080206.1 | plasmid mobilization relaxosome protein MobC | - |
| RHOM_RS17695 () | 2242826..2242990 | - | 165 | WP_014080207.1 | hypothetical protein | - |
| RHOM_RS10050 () | 2243003..2243587 | - | 585 | WP_014080208.1 | hypothetical protein | - |
| RHOM_RS10055 () | 2243601..2244560 | - | 960 | WP_014080209.1 | hypothetical protein | - |
| RHOM_RS10060 () | 2244740..2245093 | - | 354 | WP_014080210.1 | cysteine-rich VLP domain-containing protein | - |
| RHOM_RS10065 () | 2245271..2246020 | - | 750 | WP_014080212.1 | DUF4366 domain-containing protein | - |
| RHOM_RS10070 () | 2246023..2246277 | - | 255 | WP_014080213.1 | DUF4315 family protein | - |
| RHOM_RS10075 () | 2246292..2248010 | - | 1719 | WP_014080214.1 | hypothetical protein | VF |
| RHOM_RS10080 () | 2247991..2250351 | - | 2361 | WP_014080215.1 | VirB4 family type IV secretion system protein | - |
| RHOM_RS10085 () | 2250308..2250697 | - | 390 | WP_014080216.1 | PrgI family protein | - |
| RHOM_RS10090 () | 2250701..2251255 | - | 555 | WP_081467983.1 | DNA methyltransferase | - |
| RHOM_RS10095 () | 2251273..2252052 | - | 780 | WP_044024669.1 | site-specific DNA-methyltransferase | - |
| RHOM_RS10100 () | 2252042..2252773 | - | 732 | WP_014080219.1 | septation protein SpoVG family protein | - |
| RHOM_RS10105 () | 2252789..2253655 | - | 867 | WP_014080220.1 | membrane protein | - |
| RHOM_RS17000 () | 2253667..2253819 | - | 153 | Protein_1985 | hypothetical protein | - |
| RHOM_RS10110 () | 2253845..2255470 | - | 1626 | WP_002594230.1 | hypothetical protein ; Integrase | Integrase |
| RHOM_RS10115 () | 2255598..2255792 | - | 195 | WP_002594231.1 | transposon-encoded TnpW family protein | - |
| RHOM_RS10120 () | 2255789..2256643 | - | 855 | WP_002594232.1 | ATP-binding protein | - |
| RHOM_RS10125 () | 2256640..2257380 | - | 741 | WP_002594233.1 | replication initiator protein A | - |
| RHOM_RS10130 () | 2257511..2257897 | - | 387 | WP_002594234.1 | cysteine-rich VLP domain-containing protein | - |
| RHOM_RS10135 () | 2257887..2259512 | - | 1626 | WP_014080221.1 | relaxase/mobilization nuclease domain-containing protein | - |
| RHOM_RS10140 () | 2259484..2259879 | - | 396 | WP_014080222.1 | plasmid mobilization relaxosome protein MobC | - |
| RHOM_RS10145 () | 2260507..2260995 | - | 489 | WP_002569239.1 | hypothetical protein | - |
| RHOM_RS17005 () | 2261220..2261360 | - | 141 | WP_014080223.1 | membrane protein | - |
| RHOM_RS10155 () | 2261456..2262343 | - | 888 | Protein_1995 | TraM recognition domain-containing protein | - |
| RHOM_RS10160 () | 2262437..2262802 | - | 366 | WP_014080225.1 | hypothetical protein | - |
| RHOM_RS10165 () | 2262880..2263074 | - | 195 | WP_005933543.1 | transposon-encoded TnpW family protein | - |
| RHOM_RS10170 () | 2263118..2263981 | - | 864 | WP_005933545.1 | ATP-binding protein | - |
| RHOM_RS10175 () | 2263978..2264727 | - | 750 | WP_005933547.1 | phage replisome organizer N-terminal domain-containing protein | - |
| RHOM_RS10180 () | 2264841..2265239 | - | 399 | WP_005933550.1 | cysteine-rich VLP domain-containing protein | - |
| RHOM_RS10185 () | 2265366..2265644 | + | 279 | WP_005924829.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| RHOM_RS10190 () | 2265641..2265931 | + | 291 | WP_002596328.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| RHOM_RS10195 () | 2266039..2267484 | - | 1446 | WP_014080226.1 | MobA/MobL family protein | - |
| RHOM_RS10200 () | 2267670..2267960 | - | 291 | WP_014080227.1 | DUF3847 domain-containing protein | - |
| RHOM_RS10205 () | 2267989..2268450 | - | 462 | WP_014080228.1 | sigma-70 family RNA polymerase sigma factor | - |
| RHOM_RS10210 () | 2268461..2268913 | - | 453 | WP_014080229.1 | sigma-24 (feci) | - |
| RHOM_RS10215 () | 2269017..2269430 | - | 414 | WP_014080230.1 | hypothetical protein | - |
| RHOM_RS10220 () | 2269885..2270346 | - | 462 | WP_044024973.1 | hypothetical protein | - |
| RHOM_RS10225 () | 2270352..2271167 | - | 816 | WP_014080233.1 | ABC transporter permease | - |
| RHOM_RS10230 () | 2271180..2271974 | - | 795 | WP_014080234.1 | ABC transporter permease | - |
| RHOM_RS10235 () | 2271967..2272893 | - | 927 | WP_007860248.1 | hypothetical protein | VF |
| RHOM_RS10240 () | 2273029..2273946 | - | 918 | WP_014080235.1 | HAMP domain-containing histidine kinase | - |
| RHOM_RS10245 () | 2273952..2274644 | - | 693 | WP_002594745.1 | hypothetical protein | VF |
| RHOM_RS10250 () | 2274637..2274825 | - | 189 | WP_014080236.1 | helix-turn-helix domain-containing protein | - |
| RHOM_RS10255 () | 2274970..2275338 | + | 369 | WP_014080237.1 | helix-turn-helix domain-containing protein | - |
| RHOM_RS10260 () | 2275366..2275665 | - | 300 | WP_014080238.1 | hypothetical protein | - |
| RHOM_RS10265 () | 2275682..2276035 | - | 354 | WP_014080239.1 | TnpV protein | - |
| RHOM_RS17010 () | 2276062..2278986 | - | 2925 | Protein_2018 | hypothetical protein ; Integrase | Integrase |
| RHOM_RS10280 () | 2278973..2279371 | - | 399 | WP_044024670.1 | PcfB family protein | - |
| RHOM_RS10285 () | 2279496..2280209 | - | 714 | WP_014080243.1 | antirestriction protein ArdA | - |
| RHOM_RS10290 () | 2280209..2280550 | - | 342 | WP_003020223.1 | hypothetical protein | - |
| RHOM_RS10295 () | 2280834..2282282 | - | 1449 | WP_014080244.1 | ParB/RepB/Spo0J family partition protein | - |
| RHOM_RS10300 () | 2282590..2283132 | - | 543 | WP_014080245.1 | rubrerythrin family protein | - |
| RHOM_RS10305 () | 2283437..2283982 | - | 546 | WP_014080246.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|