MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 123733 bp
Accession: NC_015595 Location: 1..123733 Organism: Sphingobium chlorophenolicum L-1 Replicon: plasmid pSPHCH01
Accession: NC_015595 Location: 1..123733 Organism: Sphingobium chlorophenolicum L-1 Replicon: plasmid pSPHCH01
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SPHCH_RS20260 () | 296..490 | - | 195 | WP_013039103.1 | hypothetical protein | - |
| SPHCH_RS20270 () | 1031..1480 | - | 450 | WP_013849878.1 | four-helix bundle copper-binding protein | - |
| SPHCH_RS20275 () | 1495..1938 | - | 444 | WP_007683337.1 | DUF1622 domain-containing protein | - |
| SPHCH_RS20280 () | 1925..2647 | - | 723 | WP_007406380.1 | hypothetical protein | - |
| SPHCH_RS20285 () | 2644..3372 | - | 729 | WP_007406424.1 | hypothetical protein | - |
| SPHCH_RS20290 () | 3372..5282 | - | 1911 | WP_013039106.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| SPHCH_RS20295 () | 5306..5626 | - | 321 | WP_007406382.1 | hypothetical protein | - |
| SPHCH_RS20300 () | 5686..5907 | - | 222 | WP_007406426.1 | hypothetical protein | - |
| SPHCH_RS20305 () | 5904..6383 | - | 480 | WP_007406417.1 | heavy metal-responsive transcriptional regulator | - |
| SPHCH_RS20310 () | 6524..6880 | - | 357 | WP_004212653.1 | hypothetical protein | - |
| SPHCH_RS20315 () | 7124..7486 | + | 363 | WP_007406428.1 | hypothetical protein | - |
| SPHCH_RS20320 () | 7564..7821 | + | 258 | WP_007683334.1 | hypothetical protein | - |
| SPHCH_RS20325 () | 7885..9147 | + | 1263 | WP_013039107.1 | TolC family protein | - |
| SPHCH_RS20330 () | 9144..10634 | + | 1491 | WP_007406384.1 | Cation efflux system protein CusB | VF |
| SPHCH_RS20335 () | 10631..13774 | + | 3144 | WP_007406408.1 | efflux RND transporter permease subunit | - |
| SPHCH_RS20340 () | 13771..14175 | + | 405 | WP_007406376.1 | copper-binding protein | - |
| SPHCH_RS20345 () | 14424..15719 | + | 1296 | WP_013039108.1 | hypothetical protein | - |
| SPHCH_RS20350 () | 15786..16316 | - | 531 | WP_007686150.1 | GNAT family N-acetyltransferase | - |
| SPHCH_RS20355 () | 16313..16933 | - | 621 | WP_008832583.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| SPHCH_RS20360 () | 17059..19950 | + | 2892 | WP_013849879.1 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| SPHCH_RS20365 () | 20147..20896 | - | 750 | WP_004212890.1 | HAD-IIB family hydrolase | - |
| SPHCH_RS20370 () | 20893..23394 | - | 2502 | WP_004212886.1 | heavy metal translocating P-type ATPase | - |
| SPHCH_RS20375 () | 23391..23999 | - | 609 | WP_004212885.1 | cation diffusion facilitator family transporter | - |
| SPHCH_RS20380 () | 23996..24682 | - | 687 | WP_004212882.1 | hypothetical protein | - |
| SPHCH_RS20385 () | 24686..25099 | - | 414 | WP_004212881.1 | hypothetical protein | - |
| SPHCH_RS20390 () | 25147..25524 | - | 378 | WP_009824022.1 | hypothetical protein | - |
| SPHCH_RS20395 () | 25521..26009 | - | 489 | WP_013849881.1 | SRPBCC domain-containing protein | - |
| SPHCH_RS20400 () | 26063..29308 | - | 3246 | WP_013849882.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| SPHCH_RS20405 () | 29312..30490 | - | 1179 | WP_004212877.1 | efflux RND transporter periplasmic adaptor subunit | - |
| SPHCH_RS20410 () | 30490..31767 | - | 1278 | WP_004212875.1 | TolC family protein | - |
| SPHCH_RS20415 () | 31828..32124 | - | 297 | WP_007406840.1 | hypothetical protein | - |
| SPHCH_RS20420 () | 32198..34165 | - | 1968 | WP_004212871.1 | FTR1 family protein | - |
| SPHCH_RS20425 () | 34165..34791 | - | 627 | WP_013849883.1 | cation diffusion facilitator family transporter | - |
| SPHCH_RS20430 () | 34867..35286 | + | 420 | WP_007406847.1 | helix-turn-helix domain-containing protein | - |
| SPHCH_RS20435 () | 35280..35867 | - | 588 | WP_103095558.1 | PDZ domain-containing protein | - |
| SPHCH_RS20440 () | 35984..38953 | - | 2970 | WP_013849885.1 | Tn3 family transposase TnpA_ISAli20 | Transposase |
| SPHCH_RS20445 () | 39094..39663 | + | 570 | WP_013849886.1 | Tn3 family transposase TnpR_ISMex38 | Transposase |
| SPHCH_RS20450 () | 39664..41037 | + | 1374 | WP_013849887.1 | hypothetical protein | - |
| SPHCH_RS20455 () | 41070..41576 | - | 507 | WP_174269627.1 | Tn3 family transposase TnpR_TnXo19 | Transposase |
| SPHCH_RS20460 () | 41820..42986 | + | 1167 | WP_013849889.1 | hypothetical protein | - |
| SPHCH_RS20465 () | 43083..43481 | + | 399 | WP_007686501.1 | MbcA/ParS/Xre antitoxin family protein | - |
| SPHCH_RS20470 () | 43481..44164 | + | 684 | WP_013041559.1 | RES family NAD+ phosphorylase | - |
| SPHCH_RS20475 () | 44209..44559 | - | 351 | WP_007688086.1 | hypothetical protein | - |
| SPHCH_RS20480 () | 44624..45637 | - | 1014 | WP_013849890.1 | ParB/RepB/Spo0J family partition protein | - |
| SPHCH_RS20485 () | 45685..46887 | - | 1203 | WP_007688084.1 | Chromosome-partitioning ATPase Soj | VF |
| SPHCH_RS20490 () | 47083..48171 | - | 1089 | WP_007688083.1 | replication initiation protein | - |
| SPHCH_RS21840 () | 48558..48758 | - | 201 | WP_013041755.1 | hypothetical protein | - |
| SPHCH_RS20495 () | 48838..49164 | + | 327 | WP_007688082.1 | single-stranded DNA-binding protein | - |
| SPHCH_RS20500 () | 49226..50092 | + | 867 | WP_007688081.1 | toprim domain-containing protein | - |
| SPHCH_RS20505 () | 50159..54358 | + | 4200 | WP_013041753.1 | strawberry notch family protein | - |
| SPHCH_RS20510 () | 54470..56482 | + | 2013 | WP_007688079.1 | ParB/RepB/Spo0J family partition protein | - |
| SPHCH_RS20515 () | 56575..57498 | + | 924 | WP_007688077.1 | DUF1738 domain-containing protein | - |
| SPHCH_RS20520 () | 57551..57889 | + | 339 | WP_013849891.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| SPHCH_RS20525 () | 57902..58438 | + | 537 | WP_013849892.1 | arsenate reductase ArsC | - |
| SPHCH_RS20530 () | 58435..58875 | + | 441 | WP_007688073.1 | arsenate reductase (glutaredoxin) | - |
| SPHCH_RS20535 () | 58872..59939 | + | 1068 | WP_007688072.1 | ACR3 family arsenite efflux transporter | - |
| SPHCH_RS20540 () | 59936..60367 | + | 432 | WP_013849893.1 | GNAT family N-acetyltransferase | - |
| SPHCH_RS20545 () | 60367..61107 | + | 741 | WP_007688070.1 | arsenical resistance protein ArsH | - |
| SPHCH_RS20550 () | 61455..62396 | + | 942 | WP_007688069.1 | DUF2493 domain-containing protein | - |
| SPHCH_RS20555 () | 62509..63177 | + | 669 | WP_007688068.1 | hypothetical protein | - |
| SPHCH_RS20560 () | 63585..63992 | + | 408 | WP_013849894.1 | single-stranded DNA-binding protein | - |
| SPHCH_RS20565 () | 64068..64502 | - | 435 | WP_013849895.1 | hypothetical protein | - |
| SPHCH_RS20570 () | 64809..64973 | + | 165 | WP_013849896.1 | hypothetical protein | - |
| SPHCH_RS20575 () | 65081..65602 | + | 522 | WP_013849897.1 | hypothetical protein | - |
| SPHCH_RS22465 () | 65741..66091 | - | 351 | WP_030091328.1 | hypothetical protein | - |
| SPHCH_RS20585 () | 66351..66743 | + | 393 | WP_013849899.1 | DUF3768 domain-containing protein | - |
| SPHCH_RS22420 () | 66936..67112 | + | 177 | WP_013039042.1 | hypothetical protein | - |
| SPHCH_RS20590 () | 67125..67889 | + | 765 | WP_013849900.1 | ParA family protein | - |
| SPHCH_RS20595 () | 67889..68836 | + | 948 | WP_013849901.1 | ParB/RepB/Spo0J family partition protein | - |
| SPHCH_RS20600 () | 69043..69603 | + | 561 | WP_013849902.1 | hypothetical protein | Relaxase |
| SPHCH_RS20605 () | 69596..70717 | + | 1122 | WP_013849903.1 | T-DNA border endonuclease VirD2 | Relaxase |
| SPHCH_RS20610 () | 70885..71493 | + | 609 | WP_013849904.1 | hypothetical protein | - |
| SPHCH_RS20615 () | 71486..72535 | + | 1050 | WP_013849905.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| SPHCH_RS20620 () | 72808..73011 | + | 204 | WP_013849906.1 | hypothetical protein | - |
| SPHCH_RS20625 () | 73243..73590 | + | 348 | WP_013849907.1 | HigA family addiction module antidote protein | - |
| SPHCH_RS20630 () | 73568..75415 | + | 1848 | WP_013849908.1 | N-6 DNA methylase | - |
| SPHCH_RS20635 () | 75412..76476 | + | 1065 | WP_013849909.1 | restriction endonuclease | - |
| SPHCH_RS20640 () | 76566..76730 | + | 165 | WP_100212961.1 | DUF3489 domain-containing protein | - |
| SPHCH_RS20645 () | 76727..79021 | - | 2295 | WP_013849910.1 | AAA family ATPase | - |
| SPHCH_RS20650 () | 79224..80105 | - | 882 | WP_013849911.1 | hypothetical protein | - |
| SPHCH_RS20655 () | 80095..82059 | - | 1965 | WP_013849912.1 | Protein VirD4 | VF |
| SPHCH_RS20660 () | 82043..83047 | - | 1005 | WP_013039062.1 | Type IV secretion system protein VirB11 | VF |
| SPHCH_RS20665 () | 83051..84277 | - | 1227 | WP_013849913.1 | Type IV secretion system protein virB10 | VF |
| SPHCH_RS20670 () | 84281..85138 | - | 858 | WP_013039064.1 | Type IV secretion system protein virB9 | VF |
| SPHCH_RS20675 () | 85135..85833 | - | 699 | WP_013039065.1 | Type IV secretion system protein virB8 | VF |
| SPHCH_RS20680 () | 86174..87118 | - | 945 | WP_013849914.1 | type IV secretion system protein | - |
| SPHCH_RS22250 () | 87136..87342 | - | 207 | WP_150104476.1 | EexN family lipoprotein | - |
| SPHCH_RS20685 () | 87342..88058 | - | 717 | WP_013849915.1 | type IV secretion system protein | - |
| SPHCH_RS20690 () | 88062..90479 | - | 2418 | WP_041391586.1 | Type IV secretion system protein virB4 | VF |
| SPHCH_RS20695 () | 90466..90816 | - | 351 | WP_007683398.1 | Type IV secretion system protein virB3 | VF |
| SPHCH_RS20700 () | 90813..91151 | - | 339 | WP_007683396.1 | TrbC/VirB2 family protein | - |
| SPHCH_RS20705 () | 91148..91813 | - | 666 | WP_013849917.1 | Type IV secretion system protein virB1 | VF |
| SPHCH_RS20710 () | 91810..92151 | - | 342 | WP_013849918.1 | hypothetical protein | - |
| SPHCH_RS20715 () | 92201..93145 | - | 945 | WP_013849919.1 | phytanoyl-CoA dioxygenase family protein | - |
| SPHCH_RS20720 () | 93157..93768 | - | 612 | WP_007683387.1 | 4-coumaroyl-homoserine lactone synthase | VF |
| SPHCH_RS20725 () | 93843..94589 | - | 747 | WP_007683385.1 | LuxR family transcriptional regulator | - |
| SPHCH_RS20730 () | 94603..95364 | - | 762 | WP_013849920.1 | LuxR family transcriptional regulator | - |
| SPHCH_RS20735 () | 95586..96155 | + | 570 | WP_013039076.1 | hypothetical protein | - |
| SPHCH_RS20740 () | 96090..96944 | - | 855 | WP_007683381.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| SPHCH_RS20745 () | 96941..97204 | - | 264 | WP_007683380.1 | DUF2933 domain-containing protein | - |
| SPHCH_RS20750 () | 97457..98905 | + | 1449 | WP_013849921.1 | MBL fold/beta-CASP domain-containing RNA metallo-hydrolase | - |
| SPHCH_RS20755 () | 98902..100440 | + | 1539 | WP_013849922.1 | thymidine phosphorylase family protein | - |
| SPHCH_RS20760 () | 100437..101345 | + | 909 | WP_009823969.1 | ribose-phosphate pyrophosphokinase | - |
| SPHCH_RS20765 () | 101908..102543 | + | 636 | WP_007683376.1 | Transcriptional regulatory protein FixJ | VF |
| SPHCH_RS20770 () | 102570..102968 | - | 399 | WP_004212744.1 | Cu(I)-responsive transcriptional regulator | - |
| SPHCH_RS20775 () | 102965..105322 | - | 2358 | WP_007683374.1 | heavy metal translocating P-type ATPase | - |
| SPHCH_RS21860 () | 105422..105680 | - | 259 | Protein_106 | hypothetical protein | - |
| SPHCH_RS20780 () | 105717..106661 | - | 945 | WP_007683373.1 | copper homeostasis membrane protein CopD | - |
| SPHCH_RS20785 () | 106666..107043 | - | 378 | WP_007683372.1 | copper homeostasis periplasmic binding protein CopC | - |
| SPHCH_RS20790 () | 107177..107449 | + | 273 | WP_007683370.1 | hypothetical protein | - |
| SPHCH_RS20795 () | 107449..107889 | + | 441 | WP_007683368.1 | periplasmic heavy metal sensor | - |
| SPHCH_RS20800 () | 107886..108452 | + | 567 | WP_007683367.1 | RNA polymerase sigma factor | - |
| SPHCH_RS20805 () | 108519..110444 | + | 1926 | WP_007683365.1 | copper resistance system multicopper oxidase | - |
| SPHCH_RS20810 () | 110444..111592 | + | 1149 | WP_007683363.1 | copper resistance protein B | - |
| SPHCH_RS20815 () | 111683..112156 | + | 474 | WP_007683361.1 | DUF305 domain-containing protein | - |
| SPHCH_RS20820 () | 112215..113750 | + | 1536 | WP_007683359.1 | PAS domain S-box protein | - |
| SPHCH_RS20825 () | 113740..114363 | + | 624 | WP_007683357.1 | Transcriptional regulatory protein FixJ | VF |
| SPHCH_RS20830 () | 114445..114852 | + | 408 | WP_007683354.1 | Response regulator protein TodT | VF |
| SPHCH_RS20835 () | 114915..115265 | - | 351 | WP_007683352.1 | magnesium transporter | - |
| SPHCH_RS20840 () | 115631..115912 | - | 282 | WP_004212690.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| SPHCH_RS20845 () | 115899..116162 | - | 264 | WP_004212689.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| SPHCH_RS20850 () | 116547..116984 | - | 438 | WP_007683347.1 | metal-binding protein | - |
| SPHCH_RS20855 () | 117064..118305 | - | 1242 | WP_007683345.1 | MFS transporter | - |
| SPHCH_RS20860 () | 118299..119285 | - | 987 | WP_009823975.1 | copper resistance protein B | - |
| SPHCH_RS20865 () | 119282..120988 | - | 1707 | WP_007683343.1 | copper resistance system multicopper oxidase | - |
| SPHCH_RS20870 () | 121014..122039 | - | 1026 | WP_007683342.1 | alcohol dehydrogenase AdhP | - |
| SPHCH_RS20875 () | 122066..123586 | - | 1521 | WP_007683341.1 | aldehyde dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|