MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 40731 bp
Accession: NC_015580 Location: 1699873..1740603 Organism: Novosphingobium sp. PP1Y Replicon: chromosome
Accession: NC_015580 Location: 1699873..1740603 Organism: Novosphingobium sp. PP1Y Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PP1Y_RS14105 () | 1695843..1696910 | + | 1068 | WP_013832851.1 | tartrate dehydrogenase | - |
| PP1Y_RS14110 () | 1696950..1698272 | + | 1323 | WP_013832852.1 | LLM class flavin-dependent oxidoreductase | - |
| PP1Y_RS14115 () | 1698328..1698615 | + | 288 | WP_013832853.1 | DUF1330 domain-containing protein | - |
| PP1Y_RS14120 () | 1698645..1699064 | + | 420 | WP_013832854.1 | BphX family protein | - |
| PP1Y_RS14125 () | 1699335..1699727 | - | 393 | WP_013832855.1 | transposase | - |
| PP1Y_RS14130 () | 1699873..1703631 | - | 3759 | WP_013832856.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PP1Y_RS14135 () | 1703640..1705061 | - | 1422 | WP_013832857.1 | conjugal transfer protein TraH | - |
| PP1Y_RS14140 () | 1705122..1705700 | - | 579 | WP_148275102.1 | hypothetical protein | - |
| PP1Y_RS14145 () | 1705709..1706602 | - | 894 | WP_148274974.1 | conjugal transfer protein TraF | - |
| PP1Y_RS14150 () | 1706623..1707219 | - | 597 | WP_013832860.1 | S26 family signal peptidase | - |
| PP1Y_RS14155 () | 1707191..1707922 | - | 732 | WP_013832861.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PP1Y_RS14160 () | 1708209..1709285 | - | 1077 | WP_041558862.1 | conjugal transfer protein TraN | - |
| PP1Y_RS14165 () | 1709282..1711210 | - | 1929 | WP_013832863.1 | hypothetical protein | - |
| PP1Y_RS14170 () | 1711494..1712507 | - | 1014 | WP_013832864.1 | TraU family protein | - |
| PP1Y_RS14175 () | 1712504..1713136 | - | 633 | WP_065762428.1 | conjugal transfer protein TraW | - |
| PP1Y_RS14180 () | 1713208..1713537 | - | 330 | WP_041558863.1 | hypothetical protein | - |
| PP1Y_RS14185 () | 1713534..1716086 | - | 2553 | WP_013832866.1 | TraC family protein | - |
| PP1Y_RS14190 () | 1716083..1716721 | - | 639 | WP_013832867.1 | TraV family lipoprotein | - |
| PP1Y_RS14195 () | 1716772..1718070 | - | 1299 | WP_086000031.1 | TraB/VirB10 family protein | - |
| PP1Y_RS14200 () | 1718079..1718864 | - | 786 | WP_013832869.1 | type-F conjugative transfer system secretin TraK | - |
| PP1Y_RS14205 () | 1718848..1719486 | - | 639 | WP_013832870.1 | sex pilus assembly and synthesis protein | - |
| PP1Y_RS14210 () | 1719495..1719761 | - | 267 | WP_041558865.1 | membrane protein | - |
| PP1Y_RS14215 () | 1719916..1720242 | - | 327 | WP_013832871.1 | hypothetical protein | - |
| PP1Y_RS14220 () | 1720427..1721203 | - | 777 | WP_041559326.1 | DsbC family protein | - |
| PP1Y_RS26025 () | 1721488..1721640 | + | 153 | WP_158511855.1 | hypothetical protein | - |
| PP1Y_RS25780 () | 1721846..1722253 | + | 408 | WP_041558866.1 | hypothetical protein | - |
| PP1Y_RS14230 () | 1722295..1722582 | + | 288 | WP_013832874.1 | transcriptional regulator | - |
| PP1Y_RS14235 () | 1722737..1723165 | + | 429 | WP_041558867.1 | helix-turn-helix domain-containing protein | - |
| PP1Y_RS14240 () | 1723175..1723792 | + | 618 | WP_013832876.1 | GntR family transcriptional regulator | - |
| PP1Y_RS25785 () | 1723985..1724125 | + | 141 | WP_198409106.1 | benenodin family lasso peptide | - |
| PP1Y_RS25380 () | 1724240..1724854 | + | 615 | WP_158511856.1 | lasso peptide biosynthesis B2 protein | - |
| PP1Y_RS14255 () | 1724854..1726596 | + | 1743 | WP_013832878.1 | asparagine synthase | - |
| PP1Y_RS14260 () | 1726633..1728795 | - | 2163 | WP_013832879.1 | Atxe2 family lasso peptide isopeptidase | - |
| PP1Y_RS14265 () | 1728801..1731386 | - | 2586 | WP_013832880.1 | TonB-dependent receptor | - |
| PP1Y_RS14270 () | 1731477..1732508 | - | 1032 | WP_041558869.1 | FecR domain-containing protein | - |
| PP1Y_RS14275 () | 1732505..1733167 | - | 663 | WP_148274976.1 | RNA polymerase sigma factor | - |
| PP1Y_RS14280 () | 1733442..1734365 | + | 924 | WP_013832883.1 | HEPN domain-containing protein | - |
| PP1Y_RS14285 () | 1734436..1734705 | + | 270 | WP_013832884.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| PP1Y_RS14290 () | 1734702..1734995 | + | 294 | WP_013832885.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PP1Y_RS14295 () | 1735017..1735427 | - | 411 | WP_013832886.1 | MarR family transcriptional regulator | - |
| PP1Y_RS14300 () | 1735420..1736382 | - | 963 | WP_148274977.1 | phytanoyl-CoA dioxygenase family protein | - |
| PP1Y_RS14305 () | 1736397..1737020 | - | 624 | WP_148274978.1 | 4-coumaroyl-homoserine lactone synthase | VF |
| PP1Y_RS14310 () | 1737074..1737841 | - | 768 | WP_013832889.1 | LuxR family transcriptional regulator | - |
| PP1Y_RS14315 () | 1738123..1738320 | - | 198 | WP_013832890.1 | AlpA family transcriptional regulator | - |
| PP1Y_RS26030 () | 1738686..1738973 | + | 288 | WP_158511857.1 | hypothetical protein | - |
| PP1Y_RS14325 () | 1739347..1740603 | + | 1257 | WP_041559332.1 | Prophage integrase IntS ; Integrase | Integrase |
| PP1Y_RS14330 () | 1740629..1741417 | + | 789 | WP_013832893.1 | helix-turn-helix domain-containing protein | - |
| PP1Y_RS14335 () | 1742280..1742552 | + | 273 | WP_013832894.1 | PepSY domain-containing protein | - |
| PP1Y_RS14340 () | 1742561..1743235 | + | 675 | WP_013832895.1 | response regulator transcription factor | - |
| PP1Y_RS14345 () | 1743232..1744578 | + | 1347 | WP_013832896.1 | HAMP domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|