MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 163312 bp
Accession: NC_015410 Location: 3057752..3221063 Organism: Pseudomonas mendocina NK-01 Replicon: chromosome
Accession: NC_015410 Location: 3057752..3221063 Organism: Pseudomonas mendocina NK-01 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MDS_RS14060 () | 3054355..3054678 | - | 324 | WP_013715876.1 | helix-hairpin-helix domain-containing protein | - |
| MDS_RS14065 () | 3054946..3055800 | - | 855 | WP_041769472.1 | helix-turn-helix transcriptional regulator | - |
| MDS_RS25765 () | 3055953..3056225 | + | 273 | WP_061363591.1 | hypothetical protein | - |
| MDS_RS14070 () | 3056407..3057609 | + | 1203 | WP_013715878.1 | MFS transporter | - |
| MDS_RS14075 () | 3058146..3059090 | + | 945 | WP_041769473.1 | hypothetical protein | - |
| MDS_RS14080 () | 3059265..3060401 | - | 1137 | WP_013715879.1 | DUF3883 domain-containing protein | - |
| MDS_RS14085 () | 3060554..3060937 | + | 384 | WP_041769474.1 | nucleotide pyrophosphohydrolase | - |
| MDS_RS14090 () | 3060959..3062815 | + | 1857 | WP_013715881.1 | DUF2075 domain-containing protein | - |
| MDS_RS25770 () | 3062980..3063936 | + | 957 | WP_013715882.1 | hypothetical protein | - |
| MDS_RS25250 () | 3064068..3064556 | - | 489 | WP_049792480.1 | hypothetical protein | - |
| MDS_RS14100 () | 3064812..3065105 | + | 294 | WP_041769475.1 | His-Xaa-Ser system protein HxsD | - |
| MDS_RS14105 () | 3065108..3066598 | + | 1491 | WP_013715884.1 | His-Xaa-Ser system radical SAM maturase HxsB | - |
| MDS_RS14110 () | 3066602..3067831 | + | 1230 | WP_013715885.1 | His-Xaa-Ser system radical SAM maturase HxsC | - |
| MDS_RS14115 () | 3067828..3068463 | + | 636 | WP_041769476.1 | His-Xaa-Ser repeat protein HxsA | - |
| MDS_RS14120 () | 3068709..3070136 | + | 1428 | WP_041769477.1 | hypothetical protein | - |
| MDS_RS14125 () | 3070142..3070948 | + | 807 | WP_013715887.1 | hypothetical protein | - |
| MDS_RS14130 () | 3070952..3072592 | + | 1641 | WP_013715888.1 | hypothetical protein | - |
| MDS_RS14135 () | 3072592..3073626 | + | 1035 | WP_013715889.1 | hypothetical protein | - |
| MDS_RS14140 () | 3073968..3074918 | + | 951 | Protein_2815 | endonuclease | - |
| MDS_RS14145 () | 3075050..3075256 | - | 207 | WP_041769478.1 | carbon storage regulator | - |
| MDS_RS14150 () | 3075305..3075595 | - | 291 | WP_013715892.1 | hypothetical protein | - |
| MDS_RS14155 () | 3076110..3076379 | + | 270 | WP_023106401.1 | hypothetical protein | - |
| MDS_RS14160 () | 3076376..3076723 | + | 348 | WP_013715893.1 | hypothetical protein | - |
| MDS_RS25455 () | 3077449..3077640 | - | 192 | Protein_2820 | IS3 family transposase | - |
| MDS_RS14170 () | 3077661..3078383 | - | 723 | WP_041769479.1 | Crp/Fnr family transcriptional regulator | - |
| MDS_RS14175 () | 3078675..3087296 | + | 8622 | WP_049792481.1 | Cyclic beta-(1,2)-glucan synthase NdvB | VF |
| MDS_RS14180 () | 3087302..3087517 | + | 216 | WP_013715897.1 | hypothetical protein | - |
| MDS_RS14185 () | 3088076..3088807 | + | 732 | WP_013715898.1 | serine protease | - |
| MDS_RS14190 () | 3088915..3089163 | + | 249 | WP_013715899.1 | hypothetical protein | - |
| MDS_RS14195 () | 3089160..3089372 | + | 213 | WP_013715900.1 | CsbD family protein | - |
| MDS_RS25460 () | 3089609..3089767 | + | 159 | WP_041769480.1 | DUF3309 domain-containing protein | - |
| MDS_RS14205 () | 3089941..3090774 | + | 834 | WP_013715901.1 | BON domain-containing protein | - |
| MDS_RS14210 () | 3090899..3091441 | - | 543 | WP_013715902.1 | hypothetical protein | - |
| MDS_RS14215 () | 3091664..3092365 | + | 702 | WP_013715903.1 | alpha/beta hydrolase | - |
| MDS_RS14220 () | 3092402..3092607 | - | 206 | Protein_2831 | hypothetical protein | - |
| MDS_RS14225 () | 3092717..3093022 | - | 306 | WP_013715905.1 | hypothetical protein | - |
| MDS_RS14230 () | 3093019..3093447 | - | 429 | WP_049792482.1 | phage holin family protein | - |
| MDS_RS14235 () | 3093465..3093845 | - | 381 | WP_013715907.1 | DUF883 family protein | - |
| MDS_RS14240 () | 3094327..3094722 | + | 396 | WP_013715908.1 | DUF4398 domain-containing protein | - |
| MDS_RS14245 () | 3094719..3095507 | + | 789 | WP_013715909.1 | putative lipoprotein YiaD | VF |
| MDS_RS14250 () | 3095553..3096779 | + | 1227 | WP_013715910.1 | diguanylate cyclase | - |
| MDS_RS14255 () | 3096801..3097517 | - | 717 | WP_013715911.1 | Crp/Fnr family transcriptional regulator | - |
| MDS_RS14260 () | 3097637..3098365 | - | 729 | WP_013715912.1 | Crp/Fnr family transcriptional regulator | - |
| MDS_RS25775 () | 3099977..3100411 | - | 435 | WP_148260815.1 | hypothetical protein | - |
| MDS_RS25465 () | 3100735..3100854 | - | 120 | WP_080558754.1 | DUF3309 domain-containing protein | - |
| MDS_RS25780 () | 3100914..3101132 | - | 219 | WP_148260816.1 | hypothetical protein | - |
| MDS_RS14270 () | 3101374..3102708 | - | 1335 | WP_049792483.1 | Na+/H+ antiporter NhaA | - |
| MDS_RS14280 () | 3103539..3104081 | - | 543 | WP_041769482.1 | hypothetical protein | - |
| MDS_RS14285 () | 3104291..3104992 | + | 702 | WP_041769483.1 | alpha/beta hydrolase | - |
| MDS_RS14290 () | 3105514..3105822 | + | 309 | Protein_2846 | IS1182 family transposase ISPa22 | Transposase |
| MDS_RS25785 () | 3105812..3106168 | + | 357 | Protein_2847 | IS1182 family transposase ISPa7 | Transposase |
| MDS_RS14300 () | 3106275..3107654 | + | 1380 | WP_013715918.1 | IS4 family transposase ISPen1 | Transposase |
| MDS_RS14305 () | 3107845..3110511 | + | 2667 | WP_013715919.1 | AAA family ATPase | - |
| MDS_RS14310 () | 3110664..3111431 | - | 768 | WP_041769484.1 | MipA/OmpV family protein | - |
| MDS_RS14315 () | 3111772..3113193 | + | 1422 | WP_013715921.1 | 3-isopropylmalate dehydratase large subunit | - |
| MDS_RS14320 () | 3113195..3113803 | + | 609 | WP_013715922.1 | 3-isopropylmalate dehydratase small subunit | - |
| MDS_RS14325 () | 3113908..3114825 | - | 918 | WP_041769485.1 | LysR family transcriptional regulator | - |
| MDS_RS14330 () | 3114903..3115886 | - | 984 | WP_013715924.1 | alpha/beta hydrolase fold domain-containing protein | - |
| MDS_RS14335 () | 3116158..3116466 | - | 309 | WP_013715925.1 | DUF4387 domain-containing protein | - |
| MDS_RS14340 () | 3116459..3117874 | - | 1416 | WP_013715926.1 | acyclic terpene utilization AtuA family protein | - |
| MDS_RS14345 () | 3117902..3118924 | - | 1023 | WP_202796088.1 | phosphoglycerate dehydrogenase | - |
| MDS_RS14350 () | 3118956..3120311 | - | 1356 | WP_202796095.1 | OprD family outer membrane porin | - |
| MDS_RS14355 () | 3120443..3121735 | - | 1293 | WP_041769486.1 | citrate:proton symporter | - |
| MDS_RS14360 () | 3121907..3123094 | + | 1188 | WP_013715930.1 | citrate synthase | - |
| MDS_RS14365 () | 3123389..3124663 | + | 1275 | WP_013715931.1 | alpha/beta fold hydrolase | - |
| MDS_RS14370 () | 3124653..3125762 | + | 1110 | WP_202796089.1 | AbrB family transcriptional regulator | - |
| MDS_RS14375 () | 3125872..3126705 | - | 834 | WP_041769487.1 | SDR family oxidoreductase | - |
| MDS_RS14380 () | 3126806..3127729 | + | 924 | WP_041769488.1 | HTH-type transcriptional regulator PgrR | VF |
| MDS_RS25475 () | 3127755..3128124 | - | 370 | Protein_2865 | DNA repair protein RadC | - |
| MDS_RS14390 () | 3129170..3129451 | - | 282 | Protein_2866 | hypothetical protein | - |
| MDS_RS25955 () | 3129756..3130241 | + | 486 | WP_158307026.1 | hypothetical protein | - |
| MDS_RS14405 () | 3130238..3130531 | + | 294 | WP_041769491.1 | hypothetical protein | - |
| MDS_RS14410 () | 3130755..3131747 | - | 993 | WP_041769492.1 | hypothetical protein | - |
| MDS_RS14415 () | 3132171..3132428 | - | 258 | WP_013715936.1 | hypothetical protein | - |
| MDS_RS14420 () | 3132495..3133208 | - | 714 | WP_080558755.1 | TatD family hydrolase | - |
| MDS_RS14425 () | 3133289..3134656 | - | 1368 | WP_013715938.1 | hypothetical protein | - |
| MDS_RS26080 () | 3134653..3135204 | - | 552 | WP_013715939.1 | hypothetical protein | - |
| MDS_RS14435 () | 3135543..3137507 | - | 1965 | WP_013715940.1 | NTPase KAP | - |
| MDS_RS14440 () | 3137800..3138156 | - | 357 | WP_041769495.1 | hypothetical protein | - |
| MDS_RS14445 () | 3138182..3139720 | - | 1539 | WP_202796096.1 | DUF4041 domain-containing protein | - |
| MDS_RS14450 () | 3140209..3140715 | + | 507 | WP_013715942.1 | DNA repair protein RadC | - |
| MDS_RS14455 () | 3140751..3141518 | - | 768 | WP_041769496.1 | NYN domain-containing protein | - |
| MDS_RS14460 () | 3141845..3142228 | - | 384 | WP_013715944.1 | VOC family protein | - |
| MDS_RS14465 () | 3142299..3143411 | - | 1113 | WP_013715945.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| MDS_RS14470 () | 3143480..3144919 | - | 1440 | WP_013715946.1 | APC family permease | - |
| MDS_RS25255 () | 3145353..3146048 | + | 696 | WP_049792484.1 | Oxygen regulatory protein NreC | VF |
| MDS_RS14480 () | 3146228..3146890 | - | 663 | WP_049792485.1 | histidine phosphatase family protein | - |
| MDS_RS14485 () | 3147055..3147999 | - | 945 | WP_013715949.1 | phosphotransferase | - |
| MDS_RS14490 () | 3147996..3149135 | - | 1140 | WP_013715950.1 | N-methyl-L-tryptophan oxidase | - |
| MDS_RS14495 () | 3149785..3151071 | - | 1287 | WP_041769497.1 | aspartate aminotransferase family protein | - |
| MDS_RS14500 () | 3151419..3151787 | + | 369 | WP_041769498.1 | DUF861 domain-containing protein | - |
| MDS_RS14505 () | 3152530..3153843 | - | 1314 | WP_013715953.1 | hypothetical protein | - |
| MDS_RS14510 () | 3154494..3155408 | + | 915 | WP_041769499.1 | transcriptional regulator FeaR | - |
| MDS_RS14515 () | 3155575..3157026 | + | 1452 | WP_013715955.1 | Pseudooxynicotine oxidase | VF |
| MDS_RS14520 () | 3157023..3157424 | + | 402 | WP_049792487.1 | c-type cytochrome | - |
| MDS_RS14525 () | 3157831..3158892 | + | 1062 | WP_013715957.1 | polyamine ABC transporter substrate-binding protein | - |
| MDS_RS14530 () | 3159021..3160508 | + | 1488 | WP_013715958.1 | aldehyde dehydrogenase family protein | - |
| MDS_RS14535 () | 3160635..3161558 | - | 924 | WP_013715959.1 | transcriptional regulator FeaR | - |
| MDS_RS14540 () | 3161638..3162561 | - | 924 | WP_013715960.1 | phenylacetic acid degradation operon negative regulatory protein PaaX | - |
| MDS_RS14545 () | 3162653..3163252 | - | 600 | WP_013715961.1 | Protein YrdA | VF |
| MDS_RS14550 () | 3163239..3164948 | - | 1710 | WP_013715962.1 | phenylacetic acid degradation protein PaaN | - |
| MDS_RS14555 () | 3165350..3166123 | + | 774 | WP_013715963.1 | 2,3-dehydroadipyl-CoA hydratase | - |
| MDS_RS14560 () | 3166165..3166956 | + | 792 | WP_013715964.1 | 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaG | - |
| MDS_RS14565 () | 3166961..3168484 | + | 1524 | WP_013715965.1 | 3-hydroxyadipyl-CoA dehydrogenase | VF |
| MDS_RS14570 () | 3168471..3168920 | + | 450 | WP_013715966.1 | hydroxyphenylacetyl-CoA thioesterase PaaI | - |
| MDS_RS14575 () | 3168922..3170127 | + | 1206 | WP_085982471.1 | 3-oxoadipyl-CoA thiolase | - |
| MDS_RS14580 () | 3170289..3171608 | + | 1320 | WP_041769500.1 | phenylacetate--CoA ligase | - |
| MDS_RS14585 () | 3171963..3172955 | + | 993 | WP_013715969.1 | 1,2-phenylacetyl-CoA epoxidase subunit A | - |
| MDS_RS14590 () | 3173006..3173287 | + | 282 | WP_013715970.1 | 1,2-phenylacetyl-CoA epoxidase subunit B | - |
| MDS_RS14595 () | 3173298..3174059 | + | 762 | WP_013715971.1 | phenylacetate-CoA oxygenase subunit PaaC | - |
| MDS_RS14600 () | 3174046..3174576 | + | 531 | WP_013715972.1 | phenylacetate-CoA oxygenase subunit PaaJ | - |
| MDS_RS14605 () | 3174635..3175711 | + | 1077 | WP_013715973.1 | phenylacetate-CoA oxygenase/reductase subunit PaaK | - |
| MDS_RS14610 () | 3175850..3176158 | + | 309 | WP_013715974.1 | DUF485 domain-containing protein | - |
| MDS_RS14615 () | 3176155..3177801 | + | 1647 | WP_013715975.1 | cation acetate symporter | - |
| MDS_RS14620 () | 3177967..3180027 | + | 2061 | WP_013715976.1 | phenylacetic acid degradation bifunctional protein PaaZ | - |
| MDS_RS14625 () | 3180725..3182869 | + | 2145 | WP_013715977.1 | methyl-accepting chemotaxis protein | - |
| MDS_RS14630 () | 3182990..3183375 | + | 386 | Protein_2913 | hypothetical protein | - |
| MDS_RS14635 () | 3183425..3183870 | + | 446 | Protein_2914 | cytochrome C | - |
| MDS_RS14640 () | 3183993..3184784 | + | 792 | WP_041769501.1 | histidinol-phosphatase | - |
| MDS_RS25480 () | 3184844..3185667 | + | 824 | Protein_2916 | IS5 family transposase | - |
| MDS_RS14650 () | 3185912..3186424 | + | 513 | WP_013715984.1 | antirestriction protein ArdA | - |
| MDS_RS14655 () | 3187019..3187300 | + | 282 | WP_041769779.1 | helix-turn-helix domain-containing protein | - |
| MDS_RS14660 () | 3187312..3188139 | + | 828 | WP_013715986.1 | replication initiator protein A | - |
| MDS_RS14665 () | 3188384..3189022 | + | 639 | WP_013715988.1 | Sporulation initiation inhibitor protein Soj | VF |
| MDS_RS14670 () | 3189019..3189261 | + | 243 | WP_013715989.1 | hypothetical protein | - |
| MDS_RS14675 () | 3189258..3189782 | + | 525 | WP_041769502.1 | S26 family signal peptidase | - |
| MDS_RS14680 () | 3190133..3192082 | + | 1950 | WP_013715991.1 | relaxase/mobilization nuclease and DUF3363 domain-containing protein | - |
| MDS_RS14685 () | 3192100..3192954 | - | 855 | WP_013715992.1 | helix-turn-helix transcriptional regulator | - |
| MDS_RS14690 () | 3193110..3194342 | + | 1233 | WP_013715993.1 | 5-aminolevulinate synthase | - |
| MDS_RS14695 () | 3194344..3194847 | + | 504 | WP_013715994.1 | GNAT family N-acetyltransferase | - |
| MDS_RS14700 () | 3194844..3195914 | + | 1071 | WP_013715995.1 | Gfo/Idh/MocA family oxidoreductase | - |
| MDS_RS14705 () | 3195937..3197790 | + | 1854 | WP_013715996.1 | Asparagine synthetase [glutamine-hydrolyzing] 3 | VF |
| MDS_RS14710 () | 3197876..3199075 | + | 1200 | WP_013715997.1 | MFS transporter | - |
| MDS_RS14715 () | 3199089..3200015 | + | 927 | WP_013715998.1 | HTH-type transcriptional regulator BenM | VF |
| MDS_RS14720 () | 3200172..3200516 | + | 345 | WP_041769503.1 | toxin | Toxin Detail |
| MDS_RS14725 () | 3200513..3200821 | + | 309 | WP_013716000.1 | transcriptional regulator | Antitoxin Detail |
| MDS_RS25485 () | 3201022..3201744 | - | 723 | WP_080558760.1 | peptidase E | - |
| MDS_RS25490 () | 3201747..3202742 | - | 996 | WP_080558761.1 | ThiF family adenylyltransferase | - |
| MDS_RS25790 () | 3202812..3203042 | - | 231 | WP_148260819.1 | hypothetical protein | - |
| MDS_RS14730 () | 3203484..3205475 | + | 1992 | WP_013716001.1 | Conjugal transfer protein TraG | VF |
| MDS_RS14735 () | 3205472..3205906 | + | 435 | WP_013716002.1 | CopG family transcriptional regulator | - |
| MDS_RS14740 () | 3205966..3206934 | + | 969 | WP_013716003.1 | Type IV secretion system protein PtlH | VF |
| MDS_RS14745 () | 3206906..3207247 | + | 342 | WP_013716004.1 | TrbC/VirB2 family protein | - |
| MDS_RS14750 () | 3207244..3207516 | + | 273 | WP_013716005.1 | VirB3 family type IV secretion system protein | - |
| MDS_RS14755 () | 3207528..3209957 | + | 2430 | WP_013716006.1 | conjugal transfer protein TrbE | - |
| MDS_RS14760 () | 3209954..3210688 | + | 735 | WP_013716007.1 | P-type conjugative transfer protein TrbJ | - |
| MDS_RS14765 () | 3210701..3210886 | + | 186 | WP_013716008.1 | hypothetical protein | - |
| MDS_RS14770 () | 3210883..3212043 | + | 1161 | WP_013716009.1 | P-type conjugative transfer protein TrbL | - |
| MDS_RS14775 () | 3212056..3212763 | + | 708 | WP_013716010.1 | conjugal transfer protein TrbF | - |
| MDS_RS14780 () | 3212760..3213746 | + | 987 | WP_013716011.1 | P-type conjugative transfer protein TrbG | - |
| MDS_RS14785 () | 3213749..3215014 | + | 1266 | WP_013716012.1 | Type IV secretion system protein PtlG | VF |
| MDS_RS14790 () | 3215011..3215244 | + | 234 | WP_013716013.1 | DUF2274 domain-containing protein | - |
| MDS_RS25795 () | 3215338..3215615 | + | 278 | Protein_2949 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| MDS_RS14800 () | 3215633..3215920 | + | 288 | WP_003116607.1 | HigA family addiction module antidote protein | - |
| MDS_RS14805 () | 3216219..3217415 | - | 1197 | WP_013716015.1 | hypothetical protein | VF |
| MDS_RS14810 () | 3217415..3217666 | - | 252 | WP_013716016.1 | helix-turn-helix domain-containing protein | - |
| MDS_RS14815 () | 3217953..3218873 | - | 921 | WP_193384059.1 | hypothetical protein | - |
| MDS_RS25960 () | 3219451..3219687 | - | 237 | WP_041769504.1 | hypothetical protein | - |
| MDS_RS14825 () | 3219723..3220922 | + | 1200 | WP_013716018.1 | hypothetical protein ; Integrase | Integrase |
| MDS_RS14835 () | 3221166..3221522 | - | 357 | WP_013716019.1 | MerR family transcriptional regulator | - |
| MDS_RS14840 () | 3221503..3221805 | - | 303 | WP_003243414.1 | integration host factor subunit alpha | - |
| MDS_RS14845 () | 3221809..3224187 | - | 2379 | WP_013716021.1 | phenylalanine--tRNA ligase subunit beta | - |
| MDS_RS14850 () | 3224232..3225248 | - | 1017 | WP_013716022.1 | phenylalanine--tRNA ligase subunit alpha | - |
| MDS_RS14855 () | 3225345..3225701 | - | 357 | WP_013716023.1 | 50S ribosomal protein L20 | - |
| MDS_RS14860 () | 3225731..3225925 | - | 195 | WP_003461222.1 | 50S ribosomal protein L35 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|