MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 52364 bp
Accession: NC_015259 Location: 698692..751055 Organism: Polymorphum gilvum SL003B-26A1 Replicon: chromosome
Accession: NC_015259 Location: 698692..751055 Organism: Polymorphum gilvum SL003B-26A1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SL003B_RS03350 () | 695587..696726 | + | 1140 | WP_013651412.1 | sigma-70 family RNA polymerase sigma factor | - |
| SL003B_RS03355 () | 696723..697301 | + | 579 | WP_041375350.1 | ETC complex I subunit | - |
| SL003B_RS03360 () | 697335..698087 | + | 753 | WP_013651414.1 | rhomboid family intramembrane serine protease | - |
| SL003B_RS03365 () | 698078..698920 | + | 843 | WP_013651415.1 | ATP-dependent Clp protease proteolytic subunit | - |
| SL003B_RS03370 () | 698973..699395 | + | 423 | WP_041375351.1 | thioredoxin TrxC | - |
| SL003B_RS03375 () | 699444..700622 | + | 1179 | WP_013651417.1 | cation:proton antiporter | - |
| SL003B_RS03380 () | 700864..701085 | - | 222 | WP_013651418.1 | helix-turn-helix domain-containing protein | - |
| SL003B_RS03385 () | 701139..702269 | - | 1131 | WP_013651419.1 | Putative defective protein IntQ | VF |
| SL003B_RS03390 () | 702730..703770 | + | 1041 | WP_013651420.1 | replication initiator protein A | - |
| SL003B_RS03395 () | 704235..704465 | - | 231 | WP_013651421.1 | small multi-drug export protein | - |
| SL003B_RS03400 () | 704556..706571 | - | 2016 | WP_013651422.1 | type IV secretory system conjugative DNA transfer family protein | - |
| SL003B_RS03405 () | 707112..708053 | + | 942 | WP_013651423.1 | DUF1738 domain-containing protein | - |
| SL003B_RS03410 () | 708233..709432 | + | 1200 | WP_013651424.1 | ATP-binding protein | - |
| SL003B_RS03415 () | 709436..711970 | + | 2535 | WP_013651425.1 | S8 family peptidase | - |
| SL003B_RS03420 () | 712179..712721 | - | 543 | WP_013651426.1 | hypothetical protein | - |
| SL003B_RS03425 () | 712725..713180 | - | 456 | WP_041375353.1 | hypothetical protein | - |
| SL003B_RS03430 () | 713390..713974 | + | 585 | WP_013651427.1 | Tyrosine recombinase XerD | VF |
| SL003B_RS03435 () | 714118..714549 | - | 432 | WP_148259245.1 | hypothetical protein | - |
| SL003B_RS03440 () | 714656..715702 | + | 1047 | WP_013651429.1 | IS481 family transposase ISRhsp3 | Transposase |
| SL003B_RS03445 () | 716330..719614 | + | 3285 | WP_041375355.1 | inverse autotransporter beta-barrel domain-containing protein | - |
| SL003B_RS23245 () | 719669..720420 | + | 752 | WP_148259246.1 | IS5 family transposase ISAzs9 | Transposase |
| SL003B_RS03465 () | 721048..721440 | + | 393 | WP_013651433.1 | DUF2958 domain-containing protein | - |
| SL003B_RS03470 () | 721498..723270 | + | 1773 | Protein_689 | ParB/RepB/Spo0J family partition protein | - |
| SL003B_RS03475 () | 723414..723599 | + | 186 | WP_041375358.1 | hypothetical protein | - |
| SL003B_RS03480 () | 724081..724377 | + | 297 | WP_013651435.1 | DUF736 domain-containing protein | - |
| SL003B_RS22220 () | 724445..724924 | + | 480 | WP_013651436.1 | hypothetical protein | - |
| SL003B_RS03490 () | 725243..725809 | + | 567 | WP_013651437.1 | DUF1566 domain-containing protein | - |
| SL003B_RS03495 () | 726146..726511 | + | 366 | WP_013651438.1 | hypothetical protein | - |
| SL003B_RS23660 () | 727027..727245 | + | 219 | WP_041375359.1 | hypothetical protein | - |
| SL003B_RS03510 () | 728097..729046 | + | 950 | WP_085997565.1 | IS630 family transposase ISRm10-1 | Transposase |
| SL003B_RS03515 () | 730228..730437 | + | 210 | WP_148259247.1 | hypothetical protein | - |
| SL003B_RS03520 () | 731069..731545 | + | 477 | WP_148259387.1 | hypothetical protein | - |
| SL003B_RS03525 () | 731628..733232 | + | 1605 | WP_148259386.1 | relaxase/mobilization nuclease domain-containing protein | - |
| SL003B_RS03530 () | 733316..733933 | + | 618 | WP_013651444.1 | plasmid pRiA4b ORF-3 family protein | - |
| SL003B_RS23250 () | 733975..734307 | - | 333 | WP_148259248.1 | hypothetical protein | - |
| SL003B_RS23255 () | 734386..734772 | + | 387 | WP_013651446.1 | hypothetical protein | - |
| SL003B_RS03540 () | 734795..735127 | - | 333 | WP_013651447.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| SL003B_RS03545 () | 735121..735372 | - | 252 | WP_013651448.1 | MazE family transcriptional regulator | Antitoxin Detail |
| SL003B_RS03550 () | 735452..735811 | - | 360 | WP_013651449.1 | hypothetical protein | - |
| SL003B_RS03555 () | 735827..737293 | - | 1467 | WP_148259388.1 | Conjugal transfer protein TraG | VF |
| SL003B_RS03560 () | 737697..737924 | - | 228 | WP_041375363.1 | hypothetical protein | - |
| SL003B_RS03565 () | 737926..738498 | - | 573 | WP_041375803.1 | ParA family protein | - |
| SL003B_RS03575 () | 738556..739505 | + | 950 | WP_085997565.1 | IS630 family transposase ISRm10-1 | Transposase |
| SL003B_RS23260 () | 739477..739635 | - | 159 | WP_193371722.1 | hypothetical protein | - |
| SL003B_RS03580 () | 739811..740503 | + | 693 | WP_013651454.1 | Transcriptional activator protein LasR | VF |
| SL003B_RS03585 () | 740609..741220 | + | 612 | WP_148259389.1 | Acyl-homoserine-lactone synthase | VF |
| SL003B_RS23265 () | 741217..741402 | + | 186 | WP_148259249.1 | hypothetical protein | - |
| SL003B_RS03590 () | 741517..742083 | + | 567 | WP_013651456.1 | Tn3 family transposase ISPsy42 | Transposase |
| SL003B_RS03595 () | 742103..743149 | - | 1047 | WP_013651429.1 | IS481 family transposase ISRhsp3 | Transposase |
| SL003B_RS03600 () | 743202..744458 | - | 1257 | WP_206771956.1 | AAA family ATPase | - |
| SL003B_RS03605 () | 744451..745485 | + | 1035 | WP_013651458.1 | IS481 family transposase ISGdi10 | Transposase |
| SL003B_RS03610 () | 745551..746435 | - | 885 | WP_013651459.1 | AAA family ATPase | - |
| SL003B_RS03615 () | 746455..746697 | - | 243 | WP_013651460.1 | DUF2188 domain-containing protein | - |
| SL003B_RS03620 () | 746799..747677 | + | 879 | WP_013651461.1 | WYL domain-containing protein | - |
| SL003B_RS03625 () | 747733..749271 | + | 1539 | WP_013651462.1 | type I restriction-modification system subunit M | - |
| SL003B_RS03630 () | 749268..750440 | + | 1173 | WP_013651463.1 | restriction endonuclease subunit S | - |
| SL003B_RS23510 () | 750446..750607 | + | 162 | WP_158306625.1 | hypothetical protein | - |
| SL003B_RS03635 () | 750675..751754 | - | 1080 | WP_013651464.1 | IS5/IS1182 family transposase | - |
| SL003B_RS22645 () | 751905..753026 | + | 1122 | WP_206771957.1 | abortive infection family protein | - |
| SL003B_RS03640 () | 753075..753845 | - | 771 | WP_013650723.1 | IS21-like element helper ATPase IstB | - |
| SL003B_RS03645 () | 753842..755338 | - | 1497 | WP_013650724.1 | IS21 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|