MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 54229 bp
Accession: NC_015259 Location: 503101..557329 Organism: Polymorphum gilvum SL003B-26A1 Replicon: chromosome
Accession: NC_015259 Location: 503101..557329 Organism: Polymorphum gilvum SL003B-26A1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SL003B_RS02435 () | 498151..498381 | - | 231 | WP_013651241.1 | hypothetical protein | - |
| SL003B_RS02440 () | 498381..499181 | - | 801 | WP_148259230.1 | ParA family protein | - |
| SL003B_RS02445 () | 499181..500089 | + | 909 | WP_049792540.1 | replication initiator protein A | - |
| SL003B_RS22580 () | 500162..501105 | + | 944 | Protein_480 | IS630 family transposase | - |
| SL003B_RS23175 () | 501544..501846 | - | 303 | WP_148259231.1 | hypothetical protein | - |
| SL003B_RS02455 () | 502090..502311 | - | 222 | WP_013651245.1 | hypothetical protein | - |
| SL003B_RS02460 () | 502402..504426 | - | 2025 | WP_013651246.1 | type IV secretory system conjugative DNA transfer family protein | - |
| SL003B_RS02465 () | 504993..505904 | + | 912 | WP_041375324.1 | DUF1738 domain-containing protein | - |
| SL003B_RS22200 () | 506184..507821 | - | 1638 | WP_013651248.1 | Flagellar hook protein FlgE | VF |
| SL003B_RS23180 () | 508015..508275 | + | 261 | WP_148259232.1 | hypothetical protein | - |
| SL003B_RS22585 () | 508464..508778 | - | 315 | WP_083812026.1 | HU family DNA-binding protein | - |
| SL003B_RS23185 () | 508911..509552 | - | 642 | WP_148259233.1 | hypothetical protein | - |
| SL003B_RS02475 () | 510045..511226 | - | 1182 | WP_083812027.1 | Putative flagellin YvzB | VF |
| SL003B_RS22590 () | 511349..511882 | + | 534 | WP_083812028.1 | carbon storage regulator | - |
| SL003B_RS02490 () | 512177..512446 | + | 270 | WP_148259234.1 | hypothetical protein | - |
| SL003B_RS02495 () | 512561..513829 | + | 1269 | Protein_492 | IS5 family transposase ISRm12 | Transposase |
| SL003B_RS23190 () | 514128..514319 | + | 192 | WP_148259235.1 | hypothetical protein | - |
| SL003B_RS23195 () | 514692..515762 | - | 1071 | WP_148259236.1 | hypothetical protein | - |
| SL003B_RS02500 () | 516191..517012 | + | 822 | WP_083812029.1 | IS5 family transposase IS12528 | Transposase |
| SL003B_RS22595 () | 516992..517138 | - | 147 | WP_083812030.1 | integrase core domain-containing protein | - |
| SL003B_RS23065 () | 517135..517281 | - | 147 | WP_158306619.1 | IS3 family transposase ISDet2 | Transposase |
| SL003B_RS23070 () | 517318..517617 | - | 300 | WP_085997569.1 | IS3 family transposase ISDet2 | Transposase |
| SL003B_RS23495 () | 518216..518374 | + | 159 | WP_158306620.1 | hypothetical protein | - |
| SL003B_RS23200 () | 518727..519230 | + | 504 | WP_148259237.1 | hypothetical protein | - |
| SL003B_RS02520 () | 519669..519974 | + | 306 | WP_013651254.1 | hypothetical protein | - |
| SL003B_RS02525 () | 519978..520208 | + | 231 | WP_013651255.1 | hypothetical protein | - |
| SL003B_RS02530 () | 520208..520567 | + | 360 | WP_148259379.1 | DUF2958 domain-containing protein | - |
| SL003B_RS02535 () | 520624..522465 | + | 1842 | WP_013651257.1 | ParB/RepB/Spo0J family partition protein | - |
| SL003B_RS02540 () | 522544..522729 | + | 186 | WP_148259238.1 | hypothetical protein | - |
| SL003B_RS02545 () | 523201..523494 | + | 294 | WP_013651259.1 | DUF736 domain-containing protein | - |
| SL003B_RS02550 () | 523563..524069 | + | 507 | WP_013651260.1 | hypothetical protein | - |
| SL003B_RS02555 () | 524106..524663 | - | 558 | WP_013651261.1 | hypothetical protein | - |
| SL003B_RS02560 () | 524903..525268 | + | 366 | WP_013651262.1 | hypothetical protein | - |
| SL003B_RS23500 () | 525543..525707 | - | 165 | WP_158306621.1 | hypothetical protein | - |
| SL003B_RS02565 () | 526015..526310 | + | 296 | Protein_511 | hypothetical protein | - |
| SL003B_RS02570 () | 526929..527372 | + | 444 | WP_148259380.1 | hypothetical protein | - |
| SL003B_RS02575 () | 527362..529059 | + | 1698 | WP_041375331.1 | relaxase/mobilization nuclease domain-containing protein | - |
| SL003B_RS02580 () | 529142..529756 | + | 615 | WP_013651266.1 | plasmid pRiA4b ORF-3 family protein | - |
| SL003B_RS02585 () | 529808..530140 | - | 333 | WP_013651267.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| SL003B_RS02590 () | 530134..530385 | - | 252 | WP_013651268.1 | MazE family transcriptional regulator | Antitoxin Detail |
| SL003B_RS02595 () | 530435..530824 | - | 390 | WP_013651269.1 | hypothetical protein | - |
| SL003B_RS02600 () | 530840..532435 | - | 1596 | WP_083812031.1 | Conjugal transfer protein TraG | VF |
| SL003B_RS22210 () | 532797..533531 | + | 735 | WP_083812152.1 | LuxR family transcriptional regulator | - |
| SL003B_RS22605 () | 533634..534245 | + | 612 | WP_193371731.1 | Acyl-homoserine-lactone synthase | VF |
| SL003B_RS23205 () | 534242..534460 | + | 219 | WP_013651272.1 | hypothetical protein | - |
| SL003B_RS22610 () | 534505..535095 | + | 591 | WP_041375772.1 | recombinase family protein | - |
| SL003B_RS02615 () | 535070..537838 | - | 2769 | WP_013651273.1 | DEAD/DEAH box helicase family protein | - |
| SL003B_RS02620 () | 537841..538341 | - | 501 | WP_041375333.1 | hypothetical protein | - |
| SL003B_RS02625 () | 538344..541541 | - | 3198 | WP_013651274.1 | DUF1156 domain-containing protein | - |
| SL003B_RS02630 () | 541555..542544 | - | 990 | WP_013651275.1 | hypothetical protein | - |
| SL003B_RS02635 () | 542544..545297 | - | 2754 | WP_206771951.1 | DUF499 domain-containing protein | - |
| SL003B_RS02640 () | 545307..546164 | - | 858 | WP_148259382.1 | WYL domain-containing protein | - |
| SL003B_RS22615 () | 546423..546935 | - | 513 | WP_083812032.1 | hypothetical protein | - |
| SL003B_RS02645 () | 547070..547291 | - | 222 | WP_013651278.1 | helix-turn-helix domain-containing protein | - |
| SL003B_RS02650 () | 547314..548525 | - | 1212 | WP_013651279.1 | IS91 family transposase ISTha3 | Transposase |
| SL003B_RS02655 () | 549164..550243 | + | 1080 | WP_013651280.1 | Transcriptional activator NphR | VF |
| SL003B_RS02660 () | 550504..552204 | + | 1701 | WP_158306622.1 | hypothetical protein | - |
| SL003B_RS02675 () | 553435..553665 | + | 231 | WP_206771952.1 | hypothetical protein | - |
| SL003B_RS02680 () | 553831..554988 | + | 1158 | WP_013651285.1 | CoA transferase | - |
| SL003B_RS02685 () | 555020..556183 | + | 1164 | WP_013651286.1 | acyl-CoA/acyl-ACP dehydrogenase | - |
| SL003B_RS02690 () | 556186..556992 | + | 807 | WP_041375334.1 | CoA ester lyase | - |
| SL003B_RS02695 () | 556989..557807 | + | 819 | WP_013651288.1 | MaoC family dehydratase N-terminal domain-containing protein | - |
| SL003B_RS02700 () | 557853..558812 | - | 960 | WP_013651289.1 | AraC family transcriptional regulator | - |
| SL003B_RS02705 () | 559073..560083 | + | 1011 | WP_041375336.1 | TRAP transporter substrate-binding protein | - |
| SL003B_RS22215 () | 560080..562098 | + | 2019 | WP_013651291.1 | TRAP transporter large permease subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|