MGE detailed information
MGE type: Conjugative plasmid MGE length: 78982 bp
Accession: NC_014911 Location: 1..78982 Organism: Alicycliphilus denitrificans BC Replicon: plasmid pALIDE02
Accession: NC_014911 Location: 1..78982 Organism: Alicycliphilus denitrificans BC Replicon: plasmid pALIDE02
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ALIDE_RS22545 () | 505..4851 | - | 4347 | WP_013521160.1 | DUF1738 domain-containing protein | - |
| ALIDE_RS22550 () | 4855..5244 | - | 390 | WP_006122510.1 | protein TraD | - |
| ALIDE_RS22555 () | 5266..7329 | - | 2064 | WP_011114056.1 | DNA topoisomerase III | - |
| ALIDE_RS22560 () | 7341..7877 | - | 537 | WP_006122512.1 | conjugative transfer signal peptidase TraF | - |
| ALIDE_RS22565 () | 7874..9787 | - | 1914 | WP_000694765.1 | Conjugal transfer protein TraG | VF |
| ALIDE_RS22570 () | 9784..12024 | - | 2241 | WP_011137971.1 | Protein TraI | Relaxase |
| ALIDE_RS22575 () | 12059..12433 | - | 375 | WP_000426567.1 | conjugal transfer transcriptional regulator TraJ | - |
| ALIDE_RS22580 () | 12807..13205 | + | 399 | WP_001127128.1 | TraK family protein | - |
| ALIDE_RS22585 () | 13205..13930 | + | 726 | WP_011114058.1 | protein TraL | - |
| ALIDE_RS22590 () | 13930..14370 | + | 441 | WP_000718516.1 | conjugal transfer protein TraM | - |
| ALIDE_RS22595 () | 14573..15226 | - | 654 | WP_000826922.1 | hypothetical protein | - |
| ALIDE_RS22600 () | 15255..15602 | - | 348 | WP_000664557.1 | hypothetical protein | - |
| ALIDE_RS22605 () | 15773..16804 | - | 1032 | WP_011114059.1 | DNA-binding protein | - |
| ALIDE_RS22610 () | 16983..18032 | - | 1050 | WP_011114060.1 | ParB/RepB/Spo0J family partition protein | - |
| ALIDE_RS22615 () | 18029..18793 | - | 765 | WP_000855329.1 | ParA family protein | - |
| ALIDE_RS22620 () | 18790..19092 | - | 303 | WP_010890110.1 | transcriptional regulator KorA | - |
| ALIDE_RS22625 () | 19206..19736 | - | 531 | WP_011117143.1 | DUF2761 domain-containing protein | - |
| ALIDE_RS22630 () | 19738..20067 | - | 330 | WP_010890113.1 | protein KleE | - |
| ALIDE_RS22635 () | 20212..20427 | - | 216 | WP_010890114.1 | DUF2688 domain-containing protein | - |
| ALIDE_RS22640 () | 20486..20722 | - | 237 | WP_000041932.1 | stable inheritance protein KleA | - |
| ALIDE_RS22645 () | 20882..21139 | - | 258 | WP_010890115.1 | transcriptional repressor KorC | - |
| ALIDE_RS22650 () | 21156..22361 | - | 1206 | WP_011137972.1 | hypothetical protein | - |
| ALIDE_RS22655 () | 22413..22841 | - | 429 | WP_011137973.1 | antirestriction protein | - |
| ALIDE_RS23835 () | 24060..24386 | + | 327 | WP_013521161.1 | IS3 family transposase ISRme15 | Transposase |
| ALIDE_RS23840 () | 24383..24808 | + | 426 | WP_077268894.1 | IS3 family transposase | - |
| ALIDE_RS22660 () | 24921..26207 | - | 1287 | Protein_25 | Tn3 family transposase TnpA_IS1071 | Transposase |
| ALIDE_RS23845 () | 26517..26945 | - | 429 | WP_013521162.1 | PaaI family thioesterase | - |
| ALIDE_RS22665 () | 27927..29417 | + | 1491 | WP_013521163.1 | IS21 family transposase ISMtsp8 | Transposase |
| ALIDE_RS22670 () | 29404..30162 | + | 759 | WP_013521164.1 | IS21 family transposase ISChy4 | Transposase |
| ALIDE_RS22675 () | 30159..30371 | + | 213 | WP_004359146.1 | hypothetical protein | - |
| ALIDE_RS22680 () | 30577..30861 | - | 285 | WP_013521165.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | - |
| ALIDE_RS22685 () | 30858..31136 | - | 279 | WP_011342941.1 | hypothetical protein | - |
| ALIDE_RS22690 () | 31375..31968 | + | 594 | WP_041716419.1 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| ALIDE_RS22695 () | 31965..34994 | + | 3030 | WP_013521167.1 | Tn3 family transposase ISPsy42 | Transposase |
| ALIDE_RS23855 () | 35025..36755 | - | 1731 | Protein_34 | Tn3-like element IS1071 family transposase | - |
| ALIDE_RS22705 () | 36898..37245 | + | 348 | Protein_35 | IS3 family transposase IS1416 | Transposase |
| ALIDE_RS22710 () | 37309..37569 | + | 261 | Protein_36 | IS3 family transposase ISStma15 | Transposase |
| ALIDE_RS22715 () | 37844..39013 | - | 1170 | WP_013521169.1 | ATP-binding protein | - |
| ALIDE_RS22720 () | 39142..39846 | - | 705 | WP_013521170.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| ALIDE_RS22725 () | 39843..40457 | - | 615 | WP_013521171.1 | HTH-type transcriptional repressor ComR | VF |
| ALIDE_RS22730 () | 40521..41315 | - | 795 | WP_013521172.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| ALIDE_RS22735 () | 41317..42033 | - | 717 | WP_013521173.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| ALIDE_RS22740 () | 42030..43019 | - | 990 | WP_013521174.1 | DMT family transporter | - |
| ALIDE_RS22745 () | 43016..43678 | - | 663 | WP_013521175.1 | AhpC/TSA family protein | - |
| ALIDE_RS22750 () | 44017..44298 | - | 282 | WP_013521176.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| ALIDE_RS22755 () | 44285..44551 | - | 267 | WP_013521177.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| ALIDE_RS22760 () | 45090..46310 | - | 1221 | WP_011114072.1 | replication initiator protein A | - |
| ALIDE_RS22765 () | 46357..46698 | - | 342 | WP_000019167.1 | single-stranded DNA-binding protein | - |
| ALIDE_RS22770 () | 46812..47174 | + | 363 | WP_011137961.1 | transcriptional regulator | - |
| ALIDE_RS22775 () | 47484..48446 | + | 963 | WP_011137962.1 | Type IV secretion system protein PtlH | VF |
| ALIDE_RS22780 () | 48463..48927 | + | 465 | WP_011114046.1 | conjugal transfer system pilin TrbC | - |
| ALIDE_RS22785 () | 48931..49242 | + | 312 | WP_001207961.1 | conjugal transfer protein TrbD | - |
| ALIDE_RS22790 () | 49239..51797 | + | 2559 | WP_011114047.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| ALIDE_RS22795 () | 51794..52576 | + | 783 | WP_006122481.1 | conjugal transfer protein TrbF | - |
| ALIDE_RS22800 () | 52594..53493 | + | 900 | WP_013521178.1 | P-type conjugative transfer protein TrbG | - |
| ALIDE_RS22805 () | 53496..53984 | + | 489 | WP_006122479.1 | conjugal transfer protein TrbH | - |
| ALIDE_RS22810 () | 53989..55410 | + | 1422 | WP_011114050.1 | Type IV secretion system protein virB10 | VF |
| ALIDE_RS22815 () | 55431..56195 | + | 765 | WP_010890135.1 | P-type conjugative transfer protein TrbJ | - |
| ALIDE_RS22820 () | 56205..56432 | + | 228 | WP_000644148.1 | entry exclusion lipoprotein TrbK | - |
| ALIDE_RS22825 () | 56443..58161 | + | 1719 | WP_011114051.1 | P-type conjugative transfer protein TrbL | - |
| ALIDE_RS22830 () | 58179..58766 | + | 588 | WP_010890138.1 | conjugal transfer protein TrbM | - |
| ALIDE_RS22835 () | 58780..59415 | + | 636 | WP_011114052.1 | hypothetical protein | VF |
| ALIDE_RS22840 () | 59444..59710 | + | 267 | WP_010890140.1 | hypothetical protein | - |
| ALIDE_RS22845 () | 59710..60408 | + | 699 | WP_011114053.1 | conjugal transfer protein TraX | - |
| ALIDE_RS22850 () | 60424..60855 | + | 432 | WP_001665065.1 | Type IV secretion system putative outer membrane lipoprotein/BS1330_II0058 | VF |
| ALIDE_RS22855 () | 61008..61583 | - | 576 | WP_001173919.1 | Tn3 family transposase ISPsy42 | Transposase |
| ALIDE_RS22860 () | 61710..61946 | - | 237 | WP_013521179.1 | type II toxin-antitoxin system YafQ family toxin | - |
| ALIDE_RS22865 () | 61983..64949 | - | 2967 | WP_013521180.1 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| ALIDE_RS22870 () | 65153..66835 | + | 1683 | WP_011137965.1 | IS3 family transposase ISNoc1 | Transposase |
| ALIDE_RS22875 () | 66838..67746 | + | 909 | WP_011137966.1 | TniB family NTP-binding protein | - |
| ALIDE_RS22880 () | 67743..68960 | + | 1218 | WP_011137967.1 | TniQ family protein | - |
| ALIDE_RS22885 () | 69021..69635 | + | 615 | WP_000904941.1 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| ALIDE_RS22890 () | 69688..69924 | - | 237 | WP_001087809.1 | broad-spectrum mercury transporter MerE | - |
| ALIDE_RS22895 () | 69921..70286 | - | 366 | WP_003465059.1 | mercury resistance co-regulator MerD | - |
| ALIDE_RS22900 () | 70303..71949 | - | 1647 | WP_000136268.1 | mercury(II) reductase | - |
| ALIDE_RS22905 () | 71946..72191 | - | 246 | WP_000654684.1 | mercury resistance system transport protein MerF | - |
| ALIDE_RS22910 () | 72194..72469 | - | 276 | WP_000735441.1 | mercury resistance system periplasmic binding protein MerP | - |
| ALIDE_RS22915 () | 72485..72835 | - | 351 | WP_001294667.1 | mercuric ion transporter MerT | - |
| ALIDE_RS22920 () | 72907..73341 | + | 435 | WP_000429838.1 | Hg(II)-responsive transcriptional regulator | - |
| ALIDE_RS22925 () | 73466..74008 | - | 543 | WP_013521183.1 | cytochrome P460 family protein | - |
| ALIDE_RS22930 () | 74042..74575 | - | 534 | WP_013521184.1 | carboxymuconolactone decarboxylase family protein | - |
| ALIDE_RS22935 () | 74693..75535 | + | 843 | WP_013521185.1 | AraC family transcriptional regulator | - |
| ALIDE_RS22940 () | 75713..76003 | + | 291 | WP_001247892.1 | nucleotidyltransferase | - |
| ALIDE_RS22945 () | 76000..76386 | + | 387 | WP_003100872.1 | DUF86 domain-containing protein | - |
| ALIDE_RS23875 () | 76623..76979 | + | 357 | WP_003465043.1 | cupin domain-containing protein | - |
| ALIDE_RS22950 () | 77234..77560 | + | 327 | WP_003100858.1 | hypothetical protein | - |
| ALIDE_RS22955 () | 77557..78057 | + | 501 | WP_003100856.1 | hypothetical protein | - |
| ALIDE_RS22960 () | 78054..78425 | + | 372 | WP_003100853.1 | hypothetical protein | - |
| ALIDE_RS22965 () | 78419..78976 | + | 558 | WP_003100847.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|