MGE detailed information
MGE type: Prophage MGE length: 59724 bp
Accession: NC_014837 Location: 2457284..2517007 Organism: Pantoea sp. At-9b Replicon: chromosome
Accession: NC_014837 Location: 2457284..2517007 Organism: Pantoea sp. At-9b Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PAT9B_RS11355 () | 2452325..2453707 | + | 1383 | WP_013509411.1 | MFS transporter | - |
| PAT9B_RS11360 () | 2454122..2455003 | - | 882 | WP_013509412.1 | protease HtpX | - |
| PAT9B_RS11365 () | 2455225..2457264 | - | 2040 | WP_013509413.1 | carboxy terminal-processing peptidase | - |
| PAT9B_RS11370 () | 2457284..2457967 | - | 684 | WP_013509414.1 | RNA chaperone ProQ | - |
| PAT9B_RS11375 () | 2458064..2458564 | - | 501 | WP_013509415.1 | GAF domain-containing protein | - |
| PAT9B_RS11380 () | 2458780..2460024 | + | 1245 | WP_013509416.1 | membrane integrity lipid transport subunit YebS | - |
| PAT9B_RS11385 () | 2459993..2462632 | + | 2640 | WP_013509417.1 | hypothetical protein | VF |
| PAT9B_RS11390 () | 2462647..2464131 | + | 1485 | WP_150105789.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PAT9B_RS11395 () | 2464135..2464782 | - | 648 | WP_013509419.1 | metallophosphoesterase | - |
| PAT9B_RS11400 () | 2465318..2465596 | + | 279 | WP_013509420.1 | hypothetical protein | - |
| PAT9B_RS30925 () | 2465643..2465810 | - | 168 | WP_013509421.1 | hypothetical protein | - |
| PAT9B_RS11405 () | 2465892..2466218 | - | 327 | WP_013509422.1 | hypothetical protein | - |
| PAT9B_RS11410 () | 2466435..2467394 | - | 960 | WP_013509423.1 | DUF616 domain-containing protein | - |
| PAT9B_RS11415 () | 2467888..2468166 | + | 279 | WP_013509424.1 | DUF3761 domain-containing protein | - |
| PAT9B_RS11420 () | 2468381..2469706 | - | 1326 | WP_013509425.1 | SIR2 family protein | - |
| PAT9B_RS11425 () | 2469752..2470594 | - | 843 | WP_041525958.1 | phage repressor protein CI | - |
| PAT9B_RS11430 () | 2470709..2471110 | + | 402 | WP_013509427.1 | hypothetical protein | - |
| PAT9B_RS11435 () | 2471142..2471651 | + | 510 | WP_013509428.1 | phage regulatory CII family protein | - |
| PAT9B_RS29690 () | 2471661..2471849 | + | 189 | WP_071883902.1 | DUF2724 domain-containing protein | - |
| PAT9B_RS11440 () | 2471813..2472154 | + | 342 | WP_013509429.1 | DUF5347 domain-containing protein | - |
| PAT9B_RS11445 () | 2472222..2472452 | + | 231 | WP_013509430.1 | DUF2732 family protein | - |
| PAT9B_RS11450 () | 2472452..2472676 | + | 225 | WP_013509431.1 | TraR/DksA family transcriptional regulator | - |
| PAT9B_RS11455 () | 2472676..2474534 | + | 1859 | Protein_2245 | replication endonuclease | - |
| PAT9B_RS11460 () | 2474677..2475627 | - | 951 | WP_013509432.1 | restriction endonuclease subunit S | - |
| PAT9B_RS11465 () | 2475624..2477522 | - | 1899 | WP_013509433.1 | N-6 DNA methylase | - |
| PAT9B_RS11470 () | 2478225..2479265 | - | 1041 | WP_013509434.1 | phage portal protein | - |
| PAT9B_RS30610 () | 2479265..2479563 | - | 299 | Protein_2249 | oxidoreductase | - |
| PAT9B_RS30255 () | 2479542..2479703 | + | 162 | Protein_2250 | lysozyme | - |
| PAT9B_RS11485 () | 2479700..2480149 | + | 450 | WP_013509435.1 | Rz-like lysis system protein LysB | - |
| PAT9B_RS11490 () | 2480224..2480679 | + | 456 | Protein_2252 | phage tail protein | - |
| PAT9B_RS11495 () | 2480676..2481125 | + | 450 | WP_013509436.1 | phage virion morphogenesis protein | - |
| PAT9B_RS11500 () | 2481161..2482237 | - | 1077 | WP_013509437.1 | hypothetical protein | - |
| PAT9B_RS11505 () | 2482341..2482921 | + | 581 | Protein_2255 | phage baseplate assembly protein V | - |
| PAT9B_RS11510 () | 2482918..2483268 | + | 351 | WP_013509438.1 | GPW/gp25 family protein | - |
| PAT9B_RS11515 () | 2483273..2484181 | + | 909 | Protein_2257 | baseplate assembly protein | - |
| PAT9B_RS30615 () | 2484275..2484445 | + | 171 | WP_150105820.1 | phage tail protein | - |
| PAT9B_RS11525 () | 2485113..2485376 | + | 264 | WP_013509439.1 | helix-turn-helix domain-containing protein | - |
| PAT9B_RS11530 () | 2485425..2485832 | - | 408 | WP_013509440.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| PAT9B_RS11535 () | 2486392..2486577 | + | 186 | WP_013509441.1 | hypothetical protein | - |
| PAT9B_RS11540 () | 2487011..2487319 | + | 309 | WP_049792189.1 | hypothetical protein | - |
| - () | 2487395..2487505 | + | 111 | - | - | Antitoxin Detail |
| - () | 2487399..2487499 | - | 101 | - | - | Toxin Detail |
| PAT9B_RS11545 () | 2487640..2487987 | - | 348 | WP_041525960.1 | YebY family protein | - |
| PAT9B_RS11550 () | 2488021..2488902 | - | 882 | WP_013509443.1 | copper homeostasis membrane protein CopD | - |
| PAT9B_RS11555 () | 2488902..2489279 | - | 378 | WP_013509444.1 | copper homeostasis periplasmic binding protein CopC | - |
| PAT9B_RS11560 () | 2489433..2489663 | + | 231 | WP_013509445.1 | DNA polymerase III subunit theta | - |
| PAT9B_RS11565 () | 2489667..2490335 | + | 669 | WP_013509446.1 | exodeoxyribonuclease X | - |
| PAT9B_RS11570 () | 2490329..2492392 | - | 2064 | WP_013509447.1 | prolyl oligopeptidase family serine peptidase | - |
| PAT9B_RS11575 () | 2492513..2493166 | - | 654 | WP_013509448.1 | DUF533 domain-containing protein | - |
| PAT9B_RS11580 () | 2493330..2494508 | + | 1179 | WP_013509449.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PAT9B_RS11585 () | 2494555..2495193 | - | 639 | WP_013509450.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PAT9B_RS11590 () | 2495352..2496782 | - | 1431 | WP_013509451.1 | PTS-dependent dihydroxyacetone kinase phosphotransferase subunit DhaM | - |
| PAT9B_RS11595 () | 2496814..2497437 | - | 624 | WP_013509452.1 | dihydroxyacetone kinase ADP-binding subunit DhaL | - |
| PAT9B_RS11600 () | 2497509..2498573 | - | 1065 | WP_013509453.1 | dihydroxyacetone kinase subunit DhaK | - |
| PAT9B_RS11605 () | 2498625..2499353 | - | 729 | WP_013509454.1 | aquaporin family protein | - |
| PAT9B_RS11610 () | 2499802..2501787 | + | 1986 | WP_013509455.1 | PTS-dependent dihydroxyacetone kinase operon regulatory protein | VF |
| PAT9B_RS11615 () | 2501869..2503344 | - | 1476 | WP_013509456.1 | glucose-6-phosphate dehydrogenase | - |
| PAT9B_RS11620 () | 2503710..2504588 | + | 879 | WP_190274662.1 | MurR/RpiR family transcriptional regulator | - |
| PAT9B_RS11625 () | 2504695..2506137 | + | 1443 | WP_013509458.1 | pyruvate kinase | - |
| PAT9B_RS11630 () | 2506224..2507456 | + | 1233 | WP_013509459.1 | MFS transporter | - |
| PAT9B_RS11635 () | 2507947..2508885 | + | 939 | WP_013509460.1 | Coagulase/fibrinolysin | VF |
| PAT9B_RS11640 () | 2508940..2509914 | - | 975 | WP_013509461.1 | Lipid A biosynthesis myristoyltransferase | VF |
| PAT9B_RS11645 () | 2510041..2511375 | - | 1335 | WP_013509462.1 | murein DD-endopeptidase MepM | - |
| PAT9B_RS11650 () | 2511390..2512358 | - | 969 | WP_013509463.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PAT9B_RS11655 () | 2512436..2513191 | + | 756 | WP_013509464.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| PAT9B_RS11660 () | 2513188..2513973 | + | 786 | WP_013509465.1 | zinc ABC transporter permease subunit ZnuB | - |
| PAT9B_RS11665 () | 2513980..2514984 | - | 1005 | WP_013509466.1 | Holliday junction branch migration DNA helicase RuvB | - |
| PAT9B_RS11670 () | 2514993..2515607 | - | 615 | WP_013509467.1 | Holliday junction branch migration protein RuvA | - |
| PAT9B_RS11675 () | 2515699..2516226 | - | 528 | WP_013509468.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PAT9B_RS11680 () | 2516264..2517007 | - | 744 | WP_013509469.1 | putative transcriptional regulatory protein YebC | VF |
| PAT9B_RS11685 () | 2517169..2517600 | - | 432 | WP_013509470.1 | dihydroneopterin triphosphate diphosphatase | - |
| PAT9B_RS11690 () | 2517600..2519381 | - | 1782 | WP_013509471.1 | aspartate--tRNA ligase | - |
| PAT9B_RS11695 () | 2519603..2520424 | + | 822 | WP_041525962.1 | DUF72 domain-containing protein | - |
| PAT9B_RS11700 () | 2520517..2521245 | + | 729 | WP_013509473.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|