MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 81951 bp
Accession: NC_014664 Location: 3019135..3101085 Organism: Rhodomicrobium vannielii ATCC 17100 Replicon: chromosome
Accession: NC_014664 Location: 3019135..3101085 Organism: Rhodomicrobium vannielii ATCC 17100 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RVAN_RS13930 () | 3015188..3016216 | + | 1029 | WP_155942468.1 | O-antigen ligase family protein | - |
| RVAN_RS19730 () | 3016267..3017817 | + | 1551 | WP_013420352.1 | sugar transferase | - |
| RVAN_RS13940 () | 3018021..3018674 | + | 654 | WP_155942469.1 | hypothetical protein | - |
| RVAN_RS13950 () | 3019218..3020276 | - | 1059 | WP_013420354.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| RVAN_RS13955 () | 3020297..3020650 | - | 354 | WP_013420355.1 | hypothetical protein | - |
| RVAN_RS13960 () | 3020862..3021236 | - | 375 | WP_013420357.1 | hypothetical protein | - |
| RVAN_RS13965 () | 3021220..3021540 | - | 321 | WP_013420358.1 | DUF2190 family protein | - |
| RVAN_RS13970 () | 3021540..3021761 | - | 222 | WP_013420359.1 | hypothetical protein | - |
| RVAN_RS13975 () | 3021764..3023566 | - | 1803 | WP_013420360.1 | Mu-like prophage major head subunit gpT family protein | - |
| RVAN_RS13980 () | 3023547..3024887 | - | 1341 | WP_013420361.1 | phage portal protein | - |
| RVAN_RS13985 () | 3024890..3025420 | - | 531 | WP_013420362.1 | hypothetical protein | - |
| RVAN_RS13990 () | 3025663..3025914 | + | 252 | WP_013420363.1 | hypothetical protein | - |
| RVAN_RS13995 () | 3026106..3027911 | - | 1806 | WP_013420365.1 | phage terminase large subunit family protein | - |
| RVAN_RS14000 () | 3027901..3028341 | - | 441 | WP_049779435.1 | hypothetical protein | - |
| RVAN_RS19145 () | 3028930..3031110 | - | 2181 | WP_013420367.1 | phage/plasmid primase, P4 family | - |
| RVAN_RS14015 () | 3031458..3032759 | + | 1302 | WP_049779646.1 | hypothetical protein ; Integrase | Integrase |
| RVAN_RS19735 () | 3032699..3032911 | - | 213 | WP_013418724.1 | hypothetical protein | - |
| RVAN_RS20295 () | 3033138..3033503 | - | 366 | WP_041787287.1 | hypothetical protein | - |
| RVAN_RS14025 () | 3033943..3034356 | - | 414 | WP_013418726.1 | hypothetical protein | - |
| RVAN_RS14030 () | 3034459..3035057 | - | 599 | Protein_2748 | helix-turn-helix transcriptional regulator | - |
| RVAN_RS14035 () | 3035140..3035457 | + | 318 | WP_013418728.1 | hypothetical protein | - |
| RVAN_RS14040 () | 3035525..3038584 | + | 3060 | WP_013420370.1 | DUF927 domain-containing protein | - |
| RVAN_RS14045 () | 3039045..3040025 | - | 981 | WP_013420371.1 | toll/interleukin-1 receptor domain-containing protein | - |
| RVAN_RS14050 () | 3040381..3041049 | + | 669 | WP_210160480.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| RVAN_RS14055 () | 3041046..3041333 | + | 288 | WP_041787661.1 | hypothetical protein | - |
| RVAN_RS19745 () | 3041644..3042078 | + | 435 | WP_013420374.1 | helix-turn-helix transcriptional regulator | - |
| RVAN_RS14070 () | 3042116..3043039 | - | 924 | WP_013420375.1 | sulfite exporter TauE/SafE family protein | - |
| RVAN_RS14075 () | 3043036..3043995 | - | 960 | WP_013420376.1 | sulfite exporter TauE/SafE family protein | - |
| RVAN_RS14080 () | 3044026..3045327 | - | 1302 | WP_013420377.1 | conjugal transfer protein TrbI | - |
| RVAN_RS14085 () | 3045425..3046348 | - | 924 | WP_013420378.1 | P-type conjugative transfer protein TrbG | - |
| RVAN_RS14090 () | 3046368..3047057 | - | 690 | WP_013420379.1 | conjugal transfer protein | - |
| RVAN_RS14095 () | 3047121..3048482 | - | 1362 | WP_013420380.1 | P-type conjugative transfer protein TrbL | - |
| RVAN_RS14100 () | 3048482..3049237 | - | 756 | WP_013420381.1 | P-type conjugative transfer protein TrbJ | - |
| RVAN_RS14105 () | 3049221..3051725 | - | 2505 | WP_013420382.1 | transporter | - |
| RVAN_RS14110 () | 3051734..3052021 | - | 288 | WP_013420383.1 | VirB3 family type IV secretion system protein | - |
| RVAN_RS14115 () | 3052021..3052359 | - | 339 | WP_013420384.1 | TrbC/VirB2 family protein | - |
| RVAN_RS14120 () | 3052363..3053328 | - | 966 | WP_013420385.1 | hypothetical protein | VF |
| RVAN_RS14125 () | 3053327..3053509 | + | 183 | WP_041787669.1 | hypothetical protein | - |
| RVAN_RS14130 () | 3053873..3054178 | + | 306 | WP_013420386.1 | helix-turn-helix domain-containing protein | - |
| RVAN_RS20300 () | 3054236..3054427 | - | 192 | WP_013420387.1 | hypothetical protein | - |
| RVAN_RS14135 () | 3054620..3054823 | + | 204 | WP_013420388.1 | helix-turn-helix domain-containing protein | - |
| RVAN_RS14140 () | 3054878..3055390 | - | 513 | WP_049779441.1 | conjugative transfer signal peptidase TraF | - |
| RVAN_RS14145 () | 3055405..3057246 | - | 1842 | WP_013420390.1 | hypothetical protein | VF |
| RVAN_RS14150 () | 3057389..3059020 | - | 1632 | WP_013420391.1 | relaxase/mobilization nuclease domain-containing protein | - |
| RVAN_RS14155 () | 3059055..3059501 | - | 447 | WP_155942470.1 | hypothetical protein | - |
| RVAN_RS14160 () | 3059724..3059996 | + | 273 | WP_013420393.1 | hypothetical protein | - |
| RVAN_RS14165 () | 3060093..3060371 | + | 279 | WP_155942471.1 | hypothetical protein | - |
| RVAN_RS14170 () | 3060433..3060759 | + | 327 | WP_013420395.1 | hypothetical protein | - |
| RVAN_RS14175 () | 3060853..3061071 | + | 219 | WP_013420396.1 | hypothetical protein | - |
| RVAN_RS14180 () | 3061411..3061860 | + | 450 | WP_013420397.1 | DUF805 domain-containing protein | - |
| RVAN_RS19150 () | 3062235..3063998 | + | 1764 | WP_013420398.1 | hypothetical protein | - |
| RVAN_RS14190 () | 3064037..3064525 | + | 489 | WP_013420399.1 | PGDYG domain-containing protein | - |
| RVAN_RS14195 () | 3064775..3065740 | + | 966 | WP_013420400.1 | IS481 family transposase ISRel12 | Transposase |
| RVAN_RS20305 () | 3065930..3066175 | - | 246 | WP_210160481.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | - |
| RVAN_RS19155 () | 3066332..3067738 | - | 1407 | WP_013420401.1 | Hercynine oxygenase | VF |
| RVAN_RS14205 () | 3067825..3068922 | - | 1098 | WP_013420402.1 | RNA-directed DNA polymerase | - |
| RVAN_RS14210 () | 3068967..3069275 | - | 309 | WP_013420403.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| RVAN_RS14215 () | 3069284..3069580 | - | 297 | WP_013420404.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RVAN_RS14220 () | 3069644..3070009 | - | 366 | WP_013420405.1 | diversity-generating retroelement protein Avd | - |
| RVAN_RS19160 () | 3070118..3073126 | - | 3009 | WP_013420406.1 | Hercynine oxygenase | VF |
| RVAN_RS14235 () | 3073521..3073913 | - | 393 | WP_013420407.1 | hypothetical protein | - |
| RVAN_RS14240 () | 3074023..3075153 | - | 1131 | WP_169309559.1 | tetratricopeptide repeat protein | - |
| RVAN_RS14245 () | 3075189..3078530 | - | 3342 | WP_169309560.1 | CHAT domain-containing protein | - |
| RVAN_RS14250 () | 3079123..3079848 | - | 726 | WP_013420410.1 | M48 family metallopeptidase | - |
| RVAN_RS14255 () | 3079838..3082903 | - | 3066 | WP_013420411.1 | HsdR family type I site-specific deoxyribonuclease | - |
| RVAN_RS19165 () | 3082900..3084156 | - | 1257 | WP_013420412.1 | restriction endonuclease subunit S | - |
| RVAN_RS14265 () | 3084452..3085546 | - | 1095 | WP_013420414.1 | hypothetical protein | VF |
| RVAN_RS14270 () | 3085548..3088022 | - | 2475 | WP_013420415.1 | type I restriction-modification system subunit M | - |
| RVAN_RS14275 () | 3088398..3093134 | - | 4737 | WP_049779444.1 | DEAD/DEAH box helicase family protein | - |
| RVAN_RS19170 () | 3093120..3093560 | + | 441 | WP_049779446.1 | hypothetical protein | - |
| RVAN_RS19175 () | 3093557..3093841 | - | 285 | WP_049779447.1 | TnpV protein | - |
| RVAN_RS14280 () | 3094035..3094385 | - | 351 | WP_013420418.1 | hypothetical protein | - |
| RVAN_RS14285 () | 3094730..3095089 | + | 360 | WP_013420419.1 | hypothetical protein | - |
| RVAN_RS14290 () | 3095103..3095858 | + | 756 | WP_013419415.1 | conjugal transfer protein TraL | - |
| RVAN_RS14295 () | 3095827..3096342 | + | 516 | WP_013419416.1 | hypothetical protein | - |
| RVAN_RS14300 () | 3096385..3097038 | + | 654 | WP_013420420.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| RVAN_RS20310 () | 3097216..3097704 | - | 489 | WP_013420421.1 | hypothetical protein | - |
| RVAN_RS14310 () | 3097796..3098401 | + | 606 | WP_155942473.1 | hypothetical protein | - |
| RVAN_RS14315 () | 3099027..3099584 | - | 558 | WP_155942474.1 | Carnitine operon protein CaiE | VF |
| RVAN_RS14320 () | 3099775..3100005 | - | 231 | WP_013420425.1 | hypothetical protein | - |
| RVAN_RS14325 () | 3100024..3100392 | - | 369 | WP_041787687.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| RVAN_RS14330 () | 3100399..3100671 | - | 273 | WP_013420427.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| RVAN_RS14335 () | 3101682..3102929 | - | 1248 | WP_013420428.1 | MFS transporter | - |
| RVAN_RS14340 () | 3103202..3104830 | - | 1629 | WP_013420429.1 | chaperonin GroEL | - |
| RVAN_RS14345 () | 3104885..3105214 | - | 330 | WP_013420430.1 | co-chaperone GroES | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|