MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 132962 bp
Accession: NC_014035 Location: 1..132962 Organism: Rhodobacter capsulatus SB 1003 Replicon: plasmid pRCB133
Accession: NC_014035 Location: 1..132962 Organism: Rhodobacter capsulatus SB 1003 Replicon: plasmid pRCB133
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RCAP_RS17510 () | 61..792 | - | 732 | WP_013069231.1 | amino acid ABC transporter permease | - |
| RCAP_RS17515 () | 798..1466 | - | 669 | WP_013069232.1 | amino acid ABC transporter permease | - |
| RCAP_RS17520 () | 1527..2363 | - | 837 | WP_013069233.1 | transporter substrate-binding domain-containing protein | - |
| RCAP_RS17525 () | 2421..3161 | - | 741 | WP_013069234.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| RCAP_RS17530 () | 3403..4401 | + | 999 | WP_050759997.1 | asparaginase | - |
| RCAP_RS17535 () | 4422..5147 | + | 726 | WP_013069236.1 | GntR family transcriptional regulator | - |
| RCAP_RS17540 () | 5170..6033 | - | 864 | WP_013069237.1 | carbohydrate kinase | - |
| RCAP_RS17545 () | 6030..6896 | - | 867 | WP_013069238.1 | TIM barrel protein | - |
| RCAP_RS17550 () | 7066..8115 | - | 1050 | WP_013069239.1 | LacI family transcriptional regulator | - |
| RCAP_RS19740 () | 8308..8454 | - | 147 | WP_013069240.1 | hypothetical protein | - |
| RCAP_RS17555 () | 8503..9528 | - | 1026 | WP_013069241.1 | alpha/beta fold hydrolase | - |
| RCAP_RS17560 () | 9558..10676 | - | 1119 | WP_013069242.1 | HTH-type transcriptional activator RhaR | VF |
| RCAP_RS17565 () | 10813..11595 | + | 783 | WP_013069243.1 | alpha/beta fold hydrolase | - |
| RCAP_RS17570 () | 11868..12229 | + | 362 | Protein_13 | single-stranded DNA-binding protein | - |
| RCAP_RS17575 () | 12302..12613 | - | 312 | WP_023925859.1 | hypothetical protein | - |
| RCAP_RS17580 () | 12675..13019 | - | 345 | WP_013069246.1 | hypothetical protein | - |
| RCAP_RS17585 () | 13022..13630 | - | 609 | WP_131725973.1 | hypothetical protein | - |
| RCAP_RS17590 () | 13753..14427 | + | 675 | Protein_17 | DUF2493 domain-containing protein | - |
| RCAP_RS19075 () | 14376..14690 | - | 315 | WP_013069249.1 | hypothetical protein | - |
| RCAP_RS17595 () | 14812..15456 | + | 645 | WP_013069250.1 | hypothetical protein | - |
| RCAP_RS17600 () | 15453..16223 | + | 771 | WP_013069251.1 | Glucose-1-phosphate cytidylyltransferase | VF |
| RCAP_RS19745 () | 16208..16474 | + | 267 | WP_013069252.1 | hypothetical protein | - |
| RCAP_RS17605 () | 16396..17232 | + | 837 | WP_013069253.1 | NAD-dependent epimerase/dehydratase family protein | - |
| RCAP_RS17610 () | 17548..18006 | - | 459 | WP_013069255.1 | NUDIX hydrolase | - |
| RCAP_RS17615 () | 18110..19000 | - | 891 | WP_013069256.1 | HTH-type transcriptional regulator PgrR | VF |
| RCAP_RS17620 () | 19102..19425 | + | 324 | WP_044033737.1 | nuclear transport factor 2 family protein | - |
| RCAP_RS17625 () | 19422..20201 | + | 780 | WP_013069258.1 | 3-oxoacyl-[acyl-carrier-protein] reductase FabG | VF |
| RCAP_RS17630 () | 20288..20632 | - | 345 | WP_013069259.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| RCAP_RS17635 () | 20629..20895 | - | 267 | WP_044033738.1 | plasmid stabilization protein | Toxin Detail |
| RCAP_RS17640 () | 20986..21620 | - | 635 | Protein_29 | tyrosine-type recombinase/integrase | - |
| RCAP_RS17645 () | 22237..22740 | + | 504 | WP_013069263.1 | metal-dependent hydrolase | - |
| RCAP_RS17650 () | 22875..23123 | + | 249 | WP_148214872.1 | ATP-grasp domain-containing protein | - |
| RCAP_RS17655 () | 23143..23601 | + | 459 | WP_013069265.1 | hypothetical protein | - |
| RCAP_RS17660 () | 23613..24362 | - | 750 | WP_013069266.1 | hypothetical protein | - |
| RCAP_RS17665 () | 24359..24985 | - | 627 | WP_013069267.1 | RNA ligase family protein | - |
| RCAP_RS17670 () | 25027..25749 | - | 723 | WP_023925871.1 | hypothetical protein | - |
| RCAP_RS17675 () | 25791..26294 | - | 504 | WP_131725974.1 | hypothetical protein | - |
| RCAP_RS17680 () | 26321..26530 | + | 210 | WP_013069270.1 | hypothetical protein | - |
| RCAP_RS17685 () | 26682..27713 | + | 1032 | WP_013069271.1 | hypothetical protein | - |
| RCAP_RS17690 () | 27841..28629 | - | 789 | WP_013069272.1 | class I SAM-dependent methyltransferase | - |
| RCAP_RS17695 () | 28626..29051 | - | 426 | WP_013069273.1 | pseudoazurin | - |
| RCAP_RS17700 () | 29055..29822 | - | 768 | WP_013069274.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| RCAP_RS17705 () | 29819..30856 | - | 1038 | WP_037092865.1 | Hemin transport system permease protein HmuU | VF |
| RCAP_RS17710 () | 30856..31866 | - | 1011 | WP_013069276.1 | ABC transporter substrate-binding protein | - |
| RCAP_RS17715 () | 32386..33321 | - | 936 | WP_013069277.1 | DMT family transporter | - |
| RCAP_RS17720 () | 33343..34104 | - | 762 | WP_013069278.1 | Hemin import ATP-binding protein HmuV | VF |
| RCAP_RS17725 () | 34101..35141 | - | 1041 | WP_013069279.1 | putative ABC transporter permease protein | VF |
| RCAP_RS17730 () | 35138..36172 | - | 1035 | WP_013067069.1 | ABC transporter substrate-binding protein | - |
| RCAP_RS17735 () | 36314..37183 | + | 870 | Protein_48 | TonB-dependent receptor | - |
| RCAP_RS17740 () | 37242..37922 | - | 681 | WP_013069281.1 | Dimodular nonribosomal peptide synthase | VF |
| RCAP_RS17750 () | 38897..39835 | + | 939 | WP_013069282.1 | alpha/beta fold hydrolase | - |
| RCAP_RS17755 () | 40038..40625 | - | 588 | WP_050759995.1 | Aliphatic sulfonates import ATP-binding protein SsuB | VF |
| RCAP_RS17760 () | 40628..41386 | - | 759 | WP_013069284.1 | ABC transporter permease subunit | - |
| RCAP_RS17765 () | 41383..42312 | - | 930 | WP_013069285.1 | nitrate ABC transporter substrate-binding protein | - |
| RCAP_RS17770 () | 42309..43352 | - | 1044 | WP_013069286.1 | methyltransferase domain-containing protein | - |
| RCAP_RS17775 () | 43346..45418 | - | 2073 | WP_187148644.1 | TonB-dependent receptor | - |
| RCAP_RS17780 () | 45537..46553 | - | 1017 | WP_023925889.1 | HTH-type transcriptional activator RhaS | VF |
| RCAP_RS17785 () | 47030..48040 | + | 1011 | WP_013069289.1 | TAXI family TRAP transporter solute-binding subunit | - |
| RCAP_RS17790 () | 48124..50184 | + | 2061 | WP_013069290.1 | TRAP transporter permease | - |
| RCAP_RS17795 () | 50541..50783 | + | 243 | WP_013069291.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| RCAP_RS17800 () | 50783..51184 | + | 402 | WP_013069292.1 | type II toxin-antitoxin system VapC family toxin | - |
| RCAP_RS17805 () | 51353..52573 | - | 1221 | WP_013069293.1 | NnrS family protein | - |
| RCAP_RS17810 () | 52696..52962 | + | 267 | WP_013069294.1 | hypothetical protein | - |
| RCAP_RS17815 () | 52996..54414 | - | 1419 | WP_013069295.1 | PepSY domain-containing protein | - |
| RCAP_RS18720 () | 54445..54843 | - | 399 | WP_013069296.1 | hypothetical protein | - |
| RCAP_RS17825 () | 54896..55804 | - | 909 | WP_013069297.1 | FAD:protein FMN transferase | - |
| RCAP_RS17830 () | 55804..56364 | - | 561 | WP_013069298.1 | nitrous oxide reductase accessory protein NosL | - |
| RCAP_RS17835 () | 56361..57182 | - | 822 | WP_013069299.1 | ABC transporter permease | - |
| RCAP_RS17840 () | 57179..58066 | - | 888 | WP_013069300.1 | ABC transporter ATP-binding protein | - |
| RCAP_RS17845 () | 58041..59360 | - | 1320 | WP_013069301.1 | nitrous oxide reductase family maturation protein NosD | - |
| RCAP_RS17850 () | 59364..61310 | - | 1947 | WP_013069302.1 | TAT-dependent nitrous-oxide reductase | - |
| RCAP_RS17855 () | 61329..63497 | - | 2169 | WP_013069303.1 | regulatory protein NosR | - |
| RCAP_RS17860 () | 63497..63916 | - | 420 | WP_013069304.1 | hypothetical protein | - |
| RCAP_RS17865 () | 64043..64543 | + | 501 | WP_013069305.1 | Rrf2 family transcriptional regulator | - |
| RCAP_RS17870 () | 64758..65078 | + | 321 | WP_013069306.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| RCAP_RS17875 () | 65075..66121 | + | 1047 | WP_013069307.1 | ACR3 family arsenite efflux transporter | - |
| RCAP_RS17880 () | 66124..66513 | - | 390 | WP_013069308.1 | transferase/hydrolase | - |
| RCAP_RS17885 () | 66515..66754 | - | 240 | WP_013069309.1 | thioredoxin family protein | - |
| RCAP_RS17890 () | 66766..67821 | - | 1056 | WP_013069310.1 | permease | - |
| RCAP_RS17895 () | 67818..68108 | - | 291 | WP_013069311.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| RCAP_RS17900 () | 68181..69479 | - | 1299 | WP_148214874.1 | organoarsenical effux MFS transporter ArsJ | - |
| RCAP_RS17905 () | 69422..70429 | - | 1008 | WP_013067794.1 | ArsJ-associated glyceraldehyde-3-phosphate dehydrogenase | - |
| RCAP_RS17910 () | 70433..71278 | - | 846 | WP_013067793.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| RCAP_RS17915 () | 71345..72307 | - | 963 | Protein_83 | helix-turn-helix transcriptional regulator | - |
| RCAP_RS17920 () | 72591..73166 | + | 576 | WP_080514709.1 | sulfite exporter TauE/SafE family protein | - |
| RCAP_RS17925 () | 73604..75388 | + | 1785 | WP_013069316.1 | AAA family ATPase | - |
| RCAP_RS17930 () | 75375..77192 | + | 1818 | WP_013069317.1 | ATP-dependent helicase | - |
| RCAP_RS19750 () | 77290..77499 | - | 210 | WP_187148643.1 | hypothetical protein | - |
| RCAP_RS17935 () | 77675..78499 | - | 825 | WP_013069318.1 | SDR family oxidoreductase | - |
| RCAP_RS17940 () | 78501..79523 | - | 1023 | WP_013069319.1 | zinc-dependent alcohol dehydrogenase family protein | - |
| RCAP_RS17945 () | 79536..79931 | - | 396 | WP_013069320.1 | cupin domain-containing protein | - |
| RCAP_RS17950 () | 80047..80940 | + | 894 | WP_013069321.1 | HTH-type transcriptional regulator PgrR | VF |
| RCAP_RS17955 () | 81002..81451 | - | 450 | Protein_92 | aldo/keto reductase | - |
| RCAP_RS17960 () | 81476..82059 | - | 584 | Protein_93 | NAD(P)H-binding protein | - |
| RCAP_RS19090 () | 82090..82926 | + | 837 | WP_080514706.1 | aldo/keto reductase | - |
| RCAP_RS19450 () | 82968..83282 | - | 315 | WP_131725977.1 | hypothetical protein | - |
| RCAP_RS17975 () | 83848..84849 | + | 1002 | WP_013069327.1 | ABC transporter substrate-binding protein | - |
| RCAP_RS17980 () | 84920..85831 | + | 912 | WP_013069328.1 | proline/glycine betaine ABC transporter permease | - |
| RCAP_RS17985 () | 85824..86933 | + | 1110 | WP_013069329.1 | Glycine betaine/proline betaine transport system ATP-binding protein ProV | VF |
| RCAP_RS19095 () | 86937..87338 | + | 402 | WP_013069330.1 | helix-turn-helix domain-containing protein | - |
| RCAP_RS19755 () | 87408..87554 | + | 147 | WP_157851855.1 | hypothetical protein | - |
| RCAP_RS17995 () | 87616..88314 | - | 699 | WP_013069331.1 | Crp/Fnr family transcriptional regulator | - |
| RCAP_RS18000 () | 88398..90098 | - | 1701 | WP_013069332.1 | Putative multidrug export ATP-binding/permease protein | VF |
| RCAP_RS18005 () | 90113..90880 | - | 768 | WP_013069333.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| RCAP_RS18010 () | 90877..92847 | - | 1971 | WP_013069334.1 | Iron(3+)-hydroxamate import system permease protein FhuB | VF |
| RCAP_RS18015 () | 92844..93755 | - | 912 | WP_037092891.1 | iron-siderophore ABC transporter substrate-binding protein | - |
| RCAP_RS18020 () | 93749..95860 | - | 2112 | WP_013069336.1 | TonB-dependent siderophore receptor | - |
| RCAP_RS18025 () | 95947..96843 | - | 897 | WP_031327522.1 | HTH-type transcriptional activator Btr | VF |
| RCAP_RS18030 () | 97274..98476 | + | 1203 | WP_013069338.1 | plasmid partitioning protein RepA | - |
| RCAP_RS18035 () | 98476..99453 | + | 978 | WP_013069339.1 | plasmid partitioning protein RepB | - |
| RCAP_RS18040 () | 99677..100780 | + | 1104 | WP_013069340.1 | plasmid replication protein RepC | - |
| RCAP_RS18045 () | 100924..101766 | + | 843 | WP_013069341.1 | EAL domain-containing protein | - |
| RCAP_RS18050 () | 101785..102741 | - | 957 | WP_013069342.1 | bile acid:sodium symporter | - |
| RCAP_RS18055 () | 102814..103383 | - | 570 | WP_013069343.1 | biotin transporter BioY | - |
| RCAP_RS18060 () | 103406..103999 | - | 594 | WP_013069344.1 | energy-coupling factor transporter transmembrane protein EcfT | - |
| RCAP_RS18065 () | 103996..104754 | - | 759 | WP_080514710.1 | Biotin transport ATP-binding protein BioM | VF |
| RCAP_RS18070 () | 104825..105586 | - | 762 | WP_013069346.1 | malonate transporter subunit MadM | - |
| RCAP_RS18075 () | 105588..105989 | - | 402 | WP_013069347.1 | malonate transporter subunit MadL | - |
| RCAP_RS18080 () | 106056..106265 | - | 210 | WP_013069348.1 | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit | - |
| RCAP_RS18085 () | 106256..107008 | - | 753 | WP_013069349.1 | malonate decarboxylase holo-[acyl-carrier-protein] synthase | - |
| RCAP_RS18090 () | 107010..108095 | - | 1086 | WP_013069350.1 | AMP-binding protein | - |
| RCAP_RS18095 () | 108130..109023 | - | 894 | WP_013069351.1 | biotin-independent malonate decarboxylase subunit gamma | - |
| RCAP_RS18100 () | 109043..109999 | - | 957 | WP_013069352.1 | biotin-independent malonate decarboxylase subunit beta | - |
| RCAP_RS18105 () | 110014..110322 | - | 309 | WP_013069353.1 | malonate decarboxylase acyl carrier protein | - |
| RCAP_RS18110 () | 110337..112010 | - | 1674 | WP_013069354.1 | malonate decarboxylase subunit alpha | - |
| RCAP_RS18115 () | 112041..112871 | - | 831 | WP_013069355.1 | biotin--[acetyl-CoA-carboxylase] ligase | - |
| RCAP_RS18120 () | 112907..114115 | - | 1209 | WP_013069356.1 | Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit | - |
| RCAP_RS18125 () | 114249..115205 | - | 957 | WP_013069358.1 | triphosphoribosyl-dephospho-CoA synthase MdcB | - |
| RCAP_RS19760 () | 115521..115691 | - | 171 | WP_013069359.1 | hypothetical protein | - |
| RCAP_RS18130 () | 115706..116122 | - | 417 | WP_013069360.1 | HutP family protein | - |
| RCAP_RS18135 () | 116228..117466 | - | 1239 | WP_013069361.1 | PAS domain-containing protein | - |
| RCAP_RS18140 () | 117565..118929 | - | 1365 | WP_013069362.1 | chromate efflux transporter | - |
| RCAP_RS18145 () | 119148..119957 | + | 810 | WP_013069363.1 | class I SAM-dependent methyltransferase | - |
| RCAP_RS19455 () | 119961..120350 | - | 390 | WP_131725978.1 | hypothetical protein | - |
| RCAP_RS18155 () | 120811..121119 | + | 309 | WP_013069365.1 | DUF1778 domain-containing protein | - |
| RCAP_RS18160 () | 121120..121680 | + | 561 | WP_013069366.1 | hypothetical protein | - |
| RCAP_RS18165 () | 121820..122077 | + | 258 | WP_013069367.1 | hypothetical protein | - |
| RCAP_RS19460 () | 122094..122294 | - | 201 | Protein_137 | IS5 family transposase ISSpo9 | Transposase |
| RCAP_RS18175 () | 122595..123728 | + | 1134 | WP_044033734.1 | ROK family transcriptional regulator | - |
| RCAP_RS18180 () | 123845..125101 | + | 1257 | WP_013069369.1 | extracellular solute-binding protein | - |
| RCAP_RS18185 () | 125196..126086 | + | 891 | WP_013069370.1 | sugar ABC transporter permease | - |
| RCAP_RS18190 () | 126083..126937 | + | 855 | WP_013069371.1 | carbohydrate ABC transporter permease | - |
| RCAP_RS18195 () | 126956..128059 | + | 1104 | WP_013069372.1 | Maltose/maltodextrin import ATP-binding protein MalK | VF |
| RCAP_RS18200 () | 128056..128997 | + | 942 | WP_013069373.1 | sugar kinase | - |
| RCAP_RS18205 () | 129025..130029 | + | 1005 | WP_013069374.1 | glucosamine--fructose-6-phosphate aminotransferase | - |
| RCAP_RS18210 () | 130309..131322 | - | 1014 | WP_013069375.1 | SIS domain-containing protein | - |
| RCAP_RS18215 () | 131430..132929 | - | 1500 | WP_013069376.1 | argininosuccinate lyase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|