MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 54449 bp
Accession: NC_013717 Location: 1..54449 Organism: Citrobacter rodentium ICC168 Replicon: plasmid pCROD1
Accession: NC_013717 Location: 1..54449 Organism: Citrobacter rodentium ICC168 Replicon: plasmid pCROD1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ROD_RS25055 () | 240..494 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| ROD_RS27155 () | 730..804 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| ROD_RS25060 () | 797..1654 | + | 858 | WP_024133127.1 | incFII family plasmid replication initiator RepA | - |
| ROD_RS28785 () | 2355..2513 | + | 159 | WP_061892698.1 | hypothetical protein | - |
| ROD_RS25065 () | 2593..3246 | + | 654 | WP_012908902.1 | CPBP family intramembrane metalloprotease | - |
| ROD_RS25070 () | 3339..3596 | + | 258 | WP_000557618.1 | type II toxin-antitoxin system antitoxin PemI | - |
| ROD_RS25075 () | 3529..3930 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| ROD_RS25080 () | 4318..4614 | - | 297 | WP_024133129.1 | hypothetical protein | - |
| ROD_RS25085 () | 5726..6955 | + | 1230 | WP_012908907.1 | autotransporter strand-loop-strand O-heptosyltransferase | - |
| ROD_RS25090 () | 6939..11720 | + | 4782 | WP_012908908.1 | putative autotransporter | VF |
| ROD_RS25095 () | 12330..12558 | - | 229 | Protein_10 | hypothetical protein | - |
| ROD_RS25100 () | 12814..13066 | + | 253 | Protein_11 | IS256 family transposase ISSoEn2 | Transposase |
| ROD_RS27175 () | 13645..13917 | + | 273 | WP_148222156.1 | Major pilu subunit operon regulatory protein PapB | VF |
| ROD_RS25105 () | 14045..14563 | + | 519 | WP_012908912.1 | hypothetical protein | VF |
| ROD_RS25110 () | 14648..17053 | + | 2406 | WP_012908913.1 | Outer membrane usher protein FimD | VF |
| ROD_RS25115 () | 17046..17738 | + | 693 | WP_012908914.1 | Chaperone protein FaeE | VF |
| ROD_RS27180 () | 17725..18243 | + | 519 | WP_012908915.1 | fimbrial protein | - |
| ROD_RS25120 () | 18251..18820 | + | 570 | WP_012908916.1 | hypothetical protein | - |
| ROD_RS25125 () | 18945..19904 | + | 960 | WP_012908917.1 | hypothetical protein | - |
| ROD_RS25130 () | 20068..20844 | + | 777 | WP_024133134.1 | EAL domain-containing protein | - |
| ROD_RS27185 () | 21101..21694 | + | 594 | WP_012908919.1 | histidine phosphatase family protein | - |
| ROD_RS27190 () | 21717..21887 | - | 171 | Protein_21 | IS1 family transposase | - |
| ROD_RS27195 () | 21969..22196 | - | 228 | Protein_22 | adhesin | - |
| ROD_RS25135 () | 22328..26254 | - | 3927 | WP_012908920.1 | Serine protease EspC | VF |
| ROD_RS27865 () | 26841..26993 | + | 153 | WP_081442382.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ROD_RS25145 () | 27079..27339 | + | 261 | WP_024133137.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| ROD_RS27205 () | 27643..27942 | + | 300 | WP_024133138.1 | Chaperone protein FocC | VF |
| ROD_RS25150 () | 27957..30536 | + | 2580 | WP_012908922.1 | Outer membrane usher protein FimD | VF |
| ROD_RS25155 () | 30578..31048 | + | 471 | WP_012908923.1 | hypothetical protein | - |
| ROD_RS27870 () | 31572..32285 | + | 714 | WP_148222154.1 | hypothetical protein | - |
| ROD_RS28565 () | 32617..32847 | - | 231 | WP_148222155.1 | hypothetical protein | - |
| ROD_RS25160 () | 33519..33941 | - | 423 | WP_012908926.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| ROD_RS25165 () | 33938..34168 | - | 231 | WP_012908927.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| ROD_RS25170 () | 34837..35055 | + | 219 | WP_012908929.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| ROD_RS25175 () | 35057..35362 | + | 306 | WP_012908930.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| ROD_RS25180 () | 35364..35690 | + | 327 | WP_024133139.1 | hypothetical protein | - |
| ROD_RS25185 () | 35680..36471 | + | 792 | WP_012908932.1 | site-specific integrase | - |
| ROD_RS25190 () | 36627..40730 | - | 4104 | WP_012908933.1 | Serine protease pic autotransporter | VF |
| ROD_RS27215 () | 41029..41211 | - | 183 | WP_012908934.1 | colicin release lysis protein | - |
| ROD_RS27220 () | 41246..41782 | + | 537 | WP_012908935.1 | colicin immunity protein | - |
| ROD_RS25730 () | 41808..43358 | - | 1551 | WP_012908936.1 | hypothetical protein | - |
| ROD_RS25205 () | 43907..44329 | + | 423 | WP_024133140.1 | Exc2 family lipoprotein | - |
| ROD_RS25210 () | 44567..45559 | - | 993 | WP_012908939.1 | hypothetical protein | - |
| ROD_RS28790 () | 45608..45763 | - | 156 | WP_001404092.1 | hypothetical protein | - |
| ROD_RS25215 () | 45875..46504 | - | 630 | WP_012908941.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| ROD_RS25220 () | 46779..47314 | + | 536 | Protein_45 | tyrosine-type recombinase/integrase | - |
| ROD_RS25225 () | 47600..48241 | + | 642 | WP_012908943.1 | ParA family protein | - |
| ROD_RS25230 () | 48333..48665 | + | 333 | WP_012908944.1 | hypothetical protein | - |
| ROD_RS25235 () | 49280..49984 | - | 705 | WP_148222157.1 | replication initiation protein | - |
| ROD_RS25240 () | 50082..51653 | - | 1572 | WP_012904571.1 | IS66 family transposase ISCro1 | Transposase |
| ROD_RS25245 () | 51673..52020 | - | 348 | WP_012904570.1 | IS66 family transposase ISCro1 | Transposase |
| ROD_RS25250 () | 52020..52697 | - | 678 | WP_012904569.1 | IS66 family transposase ISCro1 | Transposase |
| ROD_RS25255 () | 52752..53165 | + | 414 | WP_042623357.1 | thermonuclease family protein | - |
| ROD_RS27230 () | 53211..53420 | + | 210 | WP_024133143.1 | hemolysin expression modulator Hha | - |
| ROD_RS25260 () | 53458..54144 | + | 687 | WP_012908946.1 | DUF2726 domain-containing protein | - |
| ROD_RS25265 () | 54141..54449 | + | 309 | WP_012908947.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|