MGE detailed information
MGE type: Prophage MGE length: 51044 bp
Accession: NC_013716 Location: 2727056..2778099 Organism: Citrobacter rodentium ICC168 Replicon: chromosome
Accession: NC_013716 Location: 2727056..2778099 Organism: Citrobacter rodentium ICC168 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ROD_RS12720 () | 2725653..2727059 | + | 1407 | WP_012906746.1 | TolC family outer membrane protein | - |
| ROD_RS12725 () | 2727056..2728822 | + | 1767 | WP_012906747.1 | Leukotoxin export ATP-binding protein LtxB | VF |
| ROD_RS12730 () | 2728830..2729993 | + | 1164 | WP_012906748.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| ROD_RS12735 () | 2730699..2730944 | + | 246 | WP_012906749.1 | DinI family protein | - |
| ROD_RS12740 () | 2731047..2731226 | + | 180 | WP_012906750.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| ROD_RS12745 () | 2731250..2731660 | + | 411 | WP_012906751.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| ROD_RS12750 () | 2731688..2732239 | + | 552 | WP_148222088.1 | Serine acetyltransferase | VF |
| ROD_RS12755 () | 2732255..2732833 | - | 579 | WP_012906753.1 | tail fiber assembly protein | - |
| ROD_RS12760 () | 2732833..2733681 | - | 849 | WP_012906754.1 | phage tail protein | - |
| ROD_RS12765 () | 2733735..2734340 | - | 606 | WP_012906755.1 | DUF2313 domain-containing protein | - |
| ROD_RS12770 () | 2734337..2735494 | - | 1158 | WP_012906756.1 | baseplate J/gp47 family protein | - |
| ROD_RS12775 () | 2735484..2735936 | - | 453 | WP_012906757.1 | phage GP46 family protein | - |
| ROD_RS12780 () | 2735933..2736517 | - | 585 | WP_012906758.1 | phage baseplate assembly protein | - |
| ROD_RS12785 () | 2736514..2737593 | - | 1080 | WP_012906759.1 | tail protein | - |
| ROD_RS12790 () | 2737590..2738993 | - | 1404 | WP_148222089.1 | DNA circularization protein | - |
| ROD_RS12795 () | 2739027..2740940 | - | 1914 | WP_012906761.1 | lytic transglycosylase domain-containing protein | - |
| ROD_RS12800 () | 2741082..2741360 | - | 279 | WP_012906763.1 | phage tail assembly protein | - |
| ROD_RS12805 () | 2741363..2741734 | - | 372 | WP_012906764.1 | phage tail tube protein | - |
| ROD_RS12810 () | 2741738..2743240 | - | 1503 | WP_012906765.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| ROD_RS26355 () | 2743237..2743401 | - | 165 | WP_012906766.1 | DUF2635 domain-containing protein | - |
| ROD_RS12820 () | 2743404..2743949 | - | 546 | WP_012906767.1 | hypothetical protein | - |
| ROD_RS12825 () | 2743946..2744296 | - | 351 | WP_012906768.1 | hypothetical protein | - |
| ROD_RS12830 () | 2744299..2744604 | - | 306 | WP_012906769.1 | hypothetical protein | - |
| ROD_RS12835 () | 2744606..2745655 | - | 1050 | WP_012906770.1 | major capsid protein | - |
| ROD_RS12840 () | 2745749..2746156 | - | 408 | WP_012906771.1 | head decoration protein | - |
| ROD_RS12845 () | 2746156..2746758 | - | 603 | WP_012906772.1 | hypothetical protein | - |
| ROD_RS12850 () | 2746760..2747626 | - | 867 | WP_012906773.1 | S49 family peptidase | - |
| ROD_RS12855 () | 2747626..2749269 | - | 1644 | WP_012906774.1 | phage portal protein | - |
| ROD_RS12860 () | 2749269..2749532 | - | 264 | WP_012906775.1 | phage head-tail adapter protein | - |
| ROD_RS12865 () | 2749541..2751496 | - | 1956 | WP_043013946.1 | phage terminase large subunit family protein | - |
| ROD_RS12870 () | 2751486..2752091 | - | 606 | WP_012906777.1 | hypothetical protein | - |
| ROD_RS12875 () | 2752262..2752903 | - | 642 | WP_012906778.1 | hypothetical protein | - |
| ROD_RS12880 () | 2752914..2753579 | - | 666 | WP_012906779.1 | hypothetical protein | - |
| ROD_RS12885 () | 2753569..2754189 | - | 621 | WP_024132786.1 | norphogenetic protein | - |
| ROD_RS26360 () | 2754096..2754698 | - | 603 | WP_012906781.1 | hypothetical protein | - |
| ROD_RS12895 () | 2755009..2755197 | - | 189 | WP_024132787.1 | hypothetical protein | - |
| ROD_RS12900 () | 2755178..2755732 | - | 555 | WP_012906783.1 | DUF2514 domain-containing protein | - |
| ROD_RS12905 () | 2755736..2756143 | - | 408 | WP_012906784.1 | hypothetical protein | - |
| ROD_RS12910 () | 2756140..2756472 | - | 333 | WP_012906785.1 | phage holin family protein | - |
| ROD_RS12915 () | 2756650..2757702 | - | 1053 | WP_012906786.1 | site-specific DNA-methyltransferase | - |
| ROD_RS12920 () | 2757852..2758043 | - | 192 | WP_012906787.1 | winged helix-turn-helix domain-containing protein | - |
| ROD_RS12925 () | 2758242..2758937 | - | 696 | WP_012906788.1 | antitermination protein | - |
| ROD_RS12930 () | 2758959..2760026 | - | 1068 | WP_012906789.1 | DUF968 domain-containing protein | - |
| ROD_RS12935 () | 2760023..2761750 | - | 1728 | WP_012906790.1 | DNA cytosine methyltransferase | - |
| ROD_RS12940 () | 2761743..2762624 | - | 882 | WP_012906791.1 | phage N-6-adenine-methyltransferase | - |
| ROD_RS12945 () | 2762621..2763493 | - | 873 | WP_012906792.1 | conserved phage C-terminal domain-containing protein | - |
| ROD_RS26365 () | 2763490..2763669 | - | 180 | WP_012906793.1 | DUF4222 domain-containing protein | - |
| ROD_RS12950 () | 2763671..2764375 | - | 705 | WP_012906794.1 | phage regulatory protein/antirepressor Ant | - |
| ROD_RS27555 () | 2764356..2764553 | - | 198 | WP_024132789.1 | hypothetical protein | - |
| ROD_RS12955 () | 2764550..2765107 | - | 558 | WP_012906795.1 | hypothetical protein | - |
| ROD_RS12960 () | 2765100..2765363 | - | 264 | WP_012906796.1 | helix-turn-helix transcriptional regulator | - |
| ROD_RS12965 () | 2765462..2766157 | + | 696 | WP_012906797.1 | helix-turn-helix transcriptional regulator | - |
| ROD_RS12970 () | 2767150..2767521 | + | 372 | WP_024132791.1 | hypothetical protein | - |
| ROD_RS12975 () | 2767578..2768405 | + | 828 | WP_012906803.1 | DUF2303 family protein | - |
| ROD_RS12980 () | 2768544..2769086 | + | 543 | WP_012906804.1 | hypothetical protein | - |
| ROD_RS12985 () | 2769071..2769271 | + | 201 | WP_012906805.1 | hypothetical protein | - |
| ROD_RS12990 () | 2769268..2769594 | + | 327 | WP_012906806.1 | hypothetical protein | - |
| ROD_RS12995 () | 2769591..2770322 | + | 732 | WP_012906807.1 | site-specific DNA-methyltransferase | - |
| ROD_RS13005 () | 2770516..2771083 | + | 568 | Protein_2583 | 3'-5' exoribonuclease | - |
| ROD_RS26370 () | 2771126..2771332 | + | 207 | WP_012906810.1 | hypothetical protein | - |
| ROD_RS13010 () | 2771293..2772459 | + | 1167 | WP_012906811.1 | Putative defective protein IntQ ; Integrase | Integrase |
| ROD_RS13015 () | 2772517..2774250 | + | 1734 | WP_024132794.1 | AAA family ATPase | - |
| ROD_RS13020 () | 2774330..2775211 | + | 882 | WP_012906813.1 | DNA adenine methylase | - |
| ROD_RS13025 () | 2775515..2775880 | + | 366 | Protein_2588 | integrase arm-type DNA-binding domain-containing protein | - |
| ROD_RS13030 () | 2776030..2776314 | + | 285 | WP_000537152.1 | IS3 family transposase ISEam1 | Transposase |
| ROD_RS13035 () | 2776311..2777165 | + | 855 | WP_081442266.1 | IS3 family transposase ISEc14 | Transposase |
| ROD_RS13040 () | 2777239..2778099 | + | 861 | Protein_2591 | IS3 family transposase ISSen1 | Transposase |
| ROD_RS13045 () | 2778106..2778336 | - | 231 | Protein_2592 | transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|