MGE detailed information
MGE type: Conjugative plasmid MGE length: 122345 bp
Accession: NC_013655 Location: 1..122345 Organism: Escherichia coli SE15 Replicon: plasmid pECSF1
Accession: NC_013655 Location: 1..122345 Organism: Escherichia coli SE15 Replicon: plasmid pECSF1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECSF_RS23175 () | 1..1959 | + | 1959 | WP_001145501.1 | ParB/RepB/Spo0J family partition protein | - |
| ECSF_RS23180 () | 2014..2448 | + | 435 | WP_000845910.1 | conjugation system SOS inhibitor PsiB | - |
| ECSF_RS23185 () | 2445..3164 | + | 720 | WP_001276230.1 | plasmid SOS inhibition protein A | - |
| - () | 3176..3375 | + | 200 | NuclAT_0 | - | - |
| - () | 3176..3375 | + | 200 | NuclAT_0 | - | - |
| - () | 3176..3375 | + | 200 | NuclAT_0 | - | - |
| - () | 3176..3375 | + | 200 | NuclAT_0 | - | - |
| ECSF_RS23195 () | 3440..3598 | + | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | - |
| ECSF_RS23215 () | 4514..4801 | + | 288 | WP_000107526.1 | hypothetical protein | - |
| ECSF_RS23220 () | 4920..5741 | + | 822 | WP_001234489.1 | DUF945 domain-containing protein | - |
| ECSF_RS23225 () | 6037..6639 | - | 603 | WP_001323326.1 | hypothetical protein | VF |
| ECSF_RS23230 () | 6970..7353 | + | 384 | WP_001151562.1 | relaxosome protein TraM | - |
| ECSF_RS23235 () | 7547..8233 | + | 687 | WP_000332487.1 | PAS domain-containing protein | - |
| ECSF_RS23240 () | 8327..8554 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| ECSF_RS23245 () | 8588..8947 | + | 360 | WP_001098988.1 | type IV conjugative transfer system pilin TraA | - |
| ECSF_RS23250 () | 8962..9273 | + | 312 | WP_000012100.1 | type IV conjugative transfer system protein TraL | - |
| ECSF_RS23255 () | 9295..9861 | + | 567 | WP_000399776.1 | type IV conjugative transfer system protein TraE | - |
| ECSF_RS23260 () | 9872..10576 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| ECSF_RS23265 () | 10576..12003 | + | 1428 | WP_000146665.1 | conjugal transfer protein TraB | - |
| ECSF_RS23270 () | 11993..12583 | + | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| ECSF_RS23275 () | 12537..12890 | + | 354 | WP_071586423.1 | conjugal transfer protein TrbD | - |
| ECSF_RS23280 () | 12902..13135 | + | 234 | WP_000235790.1 | conjugal transfer protein TrbG | - |
| ECSF_RS23285 () | 13132..13647 | + | 516 | WP_000809889.1 | type IV conjugative transfer system lipoprotein TraV | - |
| ECSF_RS25540 () | 13782..14003 | + | 222 | WP_001278694.1 | conjugal transfer protein TraR | - |
| ECSF_RS23295 () | 13996..14469 | + | 474 | WP_000549566.1 | hypothetical protein | - |
| ECSF_RS23300 () | 15134..17764 | + | 2631 | WP_000069778.1 | type IV secretion system protein TraC | - |
| ECSF_RS23305 () | 17761..18147 | + | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| ECSF_RS23310 () | 18144..18776 | + | 633 | WP_001203736.1 | type-F conjugative transfer system protein TraW | - |
| ECSF_RS23315 () | 18773..19765 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| ECSF_RS23320 () | 19795..20100 | + | 306 | WP_000224418.1 | hypothetical protein | - |
| ECSF_RS23325 () | 20109..20747 | + | 639 | WP_001080251.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| ECSF_RS23330 () | 20744..22594 | + | 1851 | WP_000821859.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| ECSF_RS23335 () | 22621..22878 | + | 258 | WP_000864314.1 | conjugal transfer protein TrbE | - |
| ECSF_RS23340 () | 22871..23614 | + | 744 | WP_001030385.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| ECSF_RS23345 () | 23628..23969 | + | 342 | WP_001298557.1 | conjugal transfer protein TrbA | - |
| ECSF_RS23350 () | 23950..24285 | - | 336 | WP_000736414.1 | hypothetical protein | - |
| ECSF_RS23355 () | 24366..24650 | + | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| ECSF_RS23360 () | 24637..25182 | + | 546 | WP_000059830.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| ECSF_RS23365 () | 25112..25459 | + | 348 | WP_001309242.1 | P-type conjugative transfer protein TrbJ | - |
| ECSF_RS23370 () | 25407..25832 | + | 426 | WP_001323332.1 | F-type conjugal transfer protein TrbF | - |
| ECSF_RS23375 () | 25819..27192 | + | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| ECSF_RS23380 () | 27189..30011 | + | 2823 | WP_001007080.1 | conjugal transfer mating pair stabilization protein TraG | - |
| ECSF_RS23385 () | 30027..30512 | + | 486 | WP_000605869.1 | hypothetical protein | - |
| ECSF_RS23390 () | 30561..31292 | + | 732 | WP_000782451.1 | complement resistance protein TraT | - |
| ECSF_RS23395 () | 31495..32232 | + | 738 | WP_000199901.1 | hypothetical protein | - |
| ECSF_RS23400 () | 32283..32480 | + | 198 | WP_000009376.1 | hypothetical protein | - |
| ECSF_RS23405 () | 32495..32920 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| ECSF_RS23410 () | 32917..33267 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| ECSF_RS23415 () | 33298..34911 | + | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| ECSF_RS23420 () | 34943..36967 | + | 2025 | Protein_45 | type IV conjugative transfer system coupling protein TraD | - |
| ECSF_RS23425 () | 36967..42237 | + | 5271 | WP_000948349.1 | Multifunctional conjugation protein TraI | Relaxase |
| ECSF_RS23430 () | 42257..43003 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| ECSF_RS23435 () | 43062..43922 | + | 861 | WP_000704523.1 | putative protein YcjY | VF |
| ECSF_RS23440 () | 44025..44585 | + | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| ECSF_RS23445 () | 44714..44926 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| ECSF_RS23450 () | 45171..45632 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| ECSF_RS23455 () | 45678..45887 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| ECSF_RS23460 () | 45925..46515 | + | 591 | WP_000766808.1 | DUF2726 domain-containing protein | - |
| ECSF_RS23465 () | 46723..47469 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| ECSF_RS23470 () | 47484..49025 | - | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| ECSF_RS23475 () | 49269..50882 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| ECSF_RS23480 () | 50913..51263 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| ECSF_RS23485 () | 51260..51685 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| ECSF_RS23490 () | 51881..52141 | + | 261 | WP_000078109.1 | replication regulatory protein RepA | - |
| ECSF_RS23495 () | 52374..52448 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| ECSF_RS23500 () | 52441..53298 | + | 858 | WP_000131004.1 | incFII family plasmid replication initiator RepA | - |
| ECSF_RS23510 () | 54354..55058 | + | 705 | WP_001067837.1 | IS6 family transposase IS26 | Transposase |
| ECSF_RS23515 () | 55088..55315 | + | 228 | WP_077459403.1 | DsbA family protein | - |
| ECSF_RS23520 () | 55305..55811 | + | 507 | WP_000949451.1 | protein disulfide oxidoreductase | - |
| ECSF_RS23525 () | 55994..56809 | + | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| ECSF_RS23530 () | 57156..59042 | + | 1887 | WP_001332815.1 | FTR1 family iron permease | - |
| ECSF_RS23535 () | 59083..59610 | + | 528 | WP_000178050.1 | iron transporter | - |
| ECSF_RS23540 () | 59714..61093 | + | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| ECSF_RS23545 () | 61096..62379 | + | 1284 | WP_000964653.1 | ABC transporter permease | - |
| ECSF_RS23550 () | 62369..63499 | + | 1131 | WP_000729218.1 | ABC transporter permease | - |
| ECSF_RS23555 () | 63504..64199 | + | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| ECSF_RS23560 () | 64186..64671 | + | 486 | WP_001267176.1 | TlpA family protein disulfide reductase | - |
| ECSF_RS23565 () | 64696..65181 | + | 486 | WP_000874189.1 | hypothetical protein | - |
| ECSF_RS23570 () | 65303..65936 | + | 634 | Protein_74 | histidine-type phosphatase | - |
| ECSF_RS26335 () | 66086..66259 | - | 174 | Protein_75 | IS5 family transposase ISKpn26 | Transposase |
| ECSF_RS26340 () | 66260..66574 | - | 315 | Protein_76 | IS5 family transposase ISKpn26 | Transposase |
| ECSF_RS26105 () | 67247..67986 | - | 740 | Protein_77 | IS3 family transposase IS629 | Transposase |
| ECSF_RS23605 () | 68088..68348 | + | 261 | WP_000371882.1 | hypothetical protein | - |
| ECSF_RS23610 () | 68345..68854 | + | 510 | WP_000194542.1 | hypothetical protein | - |
| ECSF_RS23615 () | 68874..69221 | - | 348 | WP_000142452.1 | hypothetical protein | - |
| ECSF_RS23620 () | 69350..69685 | + | 336 | WP_001080732.1 | colicin transporter | - |
| ECSF_RS23630 () | 71137..71823 | + | 687 | Protein_82 | replication initiation protein | - |
| ECSF_RS23635 () | 72155..73030 | + | 876 | WP_001224623.1 | ChaN family lipoprotein | - |
| ECSF_RS23640 () | 73038..73814 | + | 777 | WP_000981091.1 | energy transducer TonB | - |
| ECSF_RS23645 () | 73983..76244 | + | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| ECSF_RS23650 () | 76313..77488 | + | 1176 | WP_001020413.1 | putative protein YncE | VF |
| ECSF_RS26115 () | 78011..78316 | - | 306 | Protein_87 | IS91 family transposase ISSbo1 | Transposase |
| ECSF_RS25600 () | 78342..78919 | + | 578 | Protein_88 | IS3 family transposase IS629 | Transposase |
| ECSF_RS23670 () | 78810..79565 | - | 756 | WP_000065240.1 | IS21 family transposase ISEc10 | Transposase |
| ECSF_RS23675 () | 79562..81061 | - | 1500 | WP_000143800.1 | IS21 family transposase ISEc10 | Transposase |
| ECSF_RS25605 () | 81147..81497 | + | 351 | Protein_91 | IS3 family transposase | - |
| ECSF_RS23685 () | 82629..84137 | + | 1509 | WP_001189113.1 | group II intron reverse transcriptase/maturase | - |
| ECSF_RS23690 () | 84227..84610 | + | 384 | Protein_93 | IS3 family transposase IS629 | Transposase |
| ECSF_RS23695 () | 84639..85043 | + | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| ECSF_RS23700 () | 85040..85387 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| ECSF_RS23705 () | 85436..86371 | + | 936 | Protein_96 | IS66 family transposase ISEc22 | Transposase |
| ECSF_RS23710 () | 86457..87479 | + | 1023 | WP_001310017.1 | IS21 family transposase IS100kyp | Transposase |
| ECSF_RS23715 () | 87476..88258 | + | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| ECSF_RS25625 () | 88326..88934 | + | 609 | Protein_99 | IS66 family transposase ISEc22 | Transposase |
| ECSF_RS23725 () | 88997..89788 | - | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| ECSF_RS23730 () | 89795..91765 | - | 1971 | WP_001298664.1 | Hemin receptor | VF |
| ECSF_RS25630 () | 92047..92483 | + | 437 | Protein_102 | IS3 family transposase IS2 | Transposase |
| ECSF_RS25635 () | 93008..93280 | + | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| ECSF_RS26120 () | 93726..93901 | + | 176 | Protein_104 | IS3 family transposase | - |
| ECSF_RS23750 () | 94127..95296 | - | 1170 | WP_001072358.1 | hypothetical protein | - |
| ECSF_RS23755 () | 95663..95851 | + | 189 | WP_001332784.1 | hypothetical protein | - |
| ECSF_RS23760 () | 95972..96712 | + | 741 | WP_001066947.1 | IS91 family transposase ISMno23 | Transposase |
| ECSF_RS23765 () | 96955..97932 | - | 978 | WP_001309253.1 | RepB family plasmid replication initiator protein | - |
| ECSF_RS23780 () | 99107..99748 | - | 642 | WP_000990667.1 | hypothetical protein | - |
| ECSF_RS23785 () | 102070..102288 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| ECSF_RS23790 () | 102290..102595 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| ECSF_RS23795 () | 102596..103405 | + | 810 | WP_000016979.1 | site-specific integrase | - |
| ECSF_RS23800 () | 103543..103818 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| ECSF_RS23805 () | 103812..104456 | - | 645 | WP_000633911.1 | AAA family ATPase | - |
| ECSF_RS23810 () | 104685..105656 | + | 972 | WP_001103694.1 | hypothetical protein | - |
| ECSF_RS23815 () | 105661..106053 | + | 393 | WP_000340835.1 | plasmid partitioning/stability family protein | - |
| ECSF_RS23820 () | 106058..107328 | - | 1271 | Protein_117 | translesion error-prone DNA polymerase V subunit UmuC | - |
| ECSF_RS23825 () | 107328..107765 | - | 438 | WP_000109079.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| ECSF_RS23830 () | 107762..108010 | - | 249 | WP_000619112.1 | DinI-like family protein | - |
| ECSF_RS23835 () | 108145..108663 | + | 519 | WP_000115885.1 | hypothetical protein | VF |
| ECSF_RS23840 () | 108682..109902 | + | 1221 | WP_000343766.1 | ISL3 family transposase ISEc53 | Transposase |
| ECSF_RS23845 () | 110321..111151 | + | 831 | WP_001298676.1 | DUF1281 domain-containing protein | - |
| ECSF_RS23850 () | 111145..111942 | - | 798 | WP_000544830.1 | IS21 family transposase IS21 | Transposase |
| ECSF_RS23855 () | 111942..113114 | - | 1173 | WP_000952372.1 | IS21 family transposase IS21 | Transposase |
| ECSF_RS23860 () | 113155..113358 | + | 204 | WP_001298677.1 | hypothetical protein | - |
| ECSF_RS26215 () | 113355..113666 | + | 312 | WP_001310011.1 | hypothetical protein | - |
| ECSF_RS23870 () | 113742..114425 | + | 684 | WP_000086169.1 | DNA methylase | - |
| ECSF_RS23875 () | 114426..114647 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| ECSF_RS23880 () | 114661..115095 | + | 435 | WP_000274508.1 | DUF1380 family protein | - |
| ECSF_RS26345 () | 115140..115910 | + | 771 | WP_001004562.1 | hypothetical protein | - |
| ECSF_RS23890 () | 116449..116751 | + | 303 | WP_001666994.1 | antirestriction protein | - |
| ECSF_RS23895 () | 116798..117220 | + | 423 | WP_000271708.1 | DUF1380 family protein | - |
| ECSF_RS26290 () | 117217..117408 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| ECSF_RS26350 () | 117378..117858 | - | 481 | Protein_134 | hypothetical protein | - |
| ECSF_RS23905 () | 118371..118601 | + | 231 | WP_000155844.1 | hypothetical protein | - |
| ECSF_RS23910 () | 118653..120014 | + | 1362 | WP_000170671.1 | DUF3560 domain-containing protein | - |
| ECSF_RS23915 () | 120061..120624 | + | 564 | WP_001298559.1 | class I SAM-dependent methyltransferase | - |
| ECSF_RS23920 () | 120710..121168 | - | 459 | WP_011478091.1 | hypothetical protein | - |
| ECSF_RS23925 () | 121470..121997 | + | 528 | WP_000290833.1 | single-stranded DNA-binding protein | - |
| ECSF_RS23930 () | 122054..122287 | + | 234 | WP_000006018.1 | DUF905 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|