MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 154694 bp
Accession: NC_012668 Location: 2916746..3071439 Organism: Vibrio cholerae MJ-1236 Replicon: chromosome
Accession: NC_012668 Location: 2916746..3071439 Organism: Vibrio cholerae MJ-1236 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VCD_RS13570 (VCD_003620) | 2912513..2913037 | + | 525 | WP_001226222.1 | inosine/xanthosine triphosphatase | - |
| VCD_RS13575 (VCD_003621) | 2913115..2913426 | - | 312 | WP_000250616.1 | trp operon repressor | - |
| VCD_RS13580 (VCD_003622) | 2913481..2915427 | - | 1947 | WP_000197610.1 | murein transglycosylase | - |
| VCD_RS13585 (VCD_003623) | 2915789..2917456 | + | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| VCD_RS13590 (VCD_003624) | 2917627..2917998 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| VCD_RS13595 (VCD_003625) | 2918065..2919192 | - | 1128 | WP_000257629.1 | T-protein | VF |
| VCD_RS13600 (VCD_003626) | 2919205..2920278 | - | 1074 | WP_000747937.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| VCD_RS13605 (VCD_003627) | 2920520..2922196 | + | 1677 | WP_000364257.1 | Sensor histidine kinase BtsS | VF |
| VCD_RS13610 (VCD_003628) | 2922206..2922919 | + | 714 | WP_000947378.1 | Transcriptional regulatory protein BtsR | VF |
| VCD_RS13615 (VCD_003629) | 2922946..2923938 | - | 993 | WP_000529115.1 | beta-N-acetylhexosaminidase | - |
| VCD_RS13620 (VCD_003630) | 2924044..2925156 | + | 1113 | WP_000840717.1 | anhydro-N-acetylmuramic acid kinase | - |
| VCD_RS13625 (VCD_003631) | 2925174..2926097 | + | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| VCD_RS13630 (VCD_003632) | 2926121..2927917 | - | 1797 | WP_000544193.1 | sodium:proton antiporter | - |
| VCD_RS13635 (VCD_003633) | 2927936..2928277 | - | 342 | WP_001883835.1 | DUF2799 domain-containing protein | - |
| VCD_RS13640 (VCD_003634) | 2928530..2930014 | + | 1485 | WP_000964317.1 | carbon starvation protein A | - |
| VCD_RS13645 (VCD_003635) | 2930151..2931113 | - | 963 | WP_001883831.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| VCD_RS13650 (VCD_003636) | 2931148..2931582 | - | 435 | WP_001068088.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| VCD_RS13655 (VCD_003637) | 2931745..2932260 | - | 516 | WP_000071968.1 | Lipoprotein signal peptidase | VF |
| VCD_RS13660 (VCD_003638) | 2932276..2935125 | - | 2850 | WP_000006088.1 | isoleucine--tRNA ligase | - |
| VCD_RS13665 (VCD_003639) | 2935156..2936124 | - | 969 | WP_000420406.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| VCD_RS13670 (VCD_003640) | 2936193..2937755 | - | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| VCD_RS13675 (VCD_003641) | 2938013..2938273 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| VCD_RS13680 (VCD_003642) | 2938342..2938644 | - | 303 | WP_001053149.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| VCD_RS13685 (VCD_003643) | 2938867..2939757 | - | 891 | WP_000018876.1 | Transcriptional activator protein NhaR | VF |
| VCD_RS13690 (VCD_003645) | 2940152..2941300 | + | 1149 | WP_000609761.1 | Na/Pi cotransporter family protein | - |
| VCD_RS13695 (VCD_003646) | 2941393..2942244 | - | 852 | WP_001250353.1 | thymidylate synthase | - |
| VCD_RS13700 (VCD_003647) | 2942254..2943069 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| VCD_RS13705 (VCD_003648) | 2943098..2943892 | - | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| VCD_RS13710 (VCD_003649) | 2943902..2946148 | - | 2247 | WP_000952226.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| VCD_RS13715 (VCD_003650) | 2946151..2946669 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| VCD_RS13725 (VCD_003651) | 2947300..2947965 | + | 666 | WP_000801223.1 | DNA mismatch repair endonuclease MutH | - |
| VCD_RS13730 (VCD_003652) | 2948182..2949216 | + | 1035 | WP_001200442.1 | NADP(H)-dependent aldo-keto reductase | - |
| VCD_RS13735 (VCD_003653) | 2949254..2949505 | - | 252 | WP_001249919.1 | hypothetical protein | - |
| VCD_RS13740 (VCD_003654) | 2950083..2951417 | - | 1335 | WP_000107102.1 | Transcriptional regulatory protein ZraR | VF |
| VCD_RS13745 (VCD_003655) | 2951691..2953223 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| VCD_RS13755 (VCD_003657) | 2954522..2955835 | - | 1314 | WP_000815019.1 | branched-chain amino acid transport system II carrier protein | - |
| VCD_RS13760 (VCD_003658) | 2956144..2956866 | + | 723 | WP_000856169.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| VCD_RS13765 (VCD_003659) | 2956954..2958225 | + | 1272 | WP_000597951.1 | ATP-dependent RNA helicase SrmB | - |
| VCD_RS13770 (VCD_003660) | 2958347..2959936 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| VCD_RS13775 (VCD_003661) | 2960193..2960840 | - | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| VCD_RS13780 (VCD_003662) | 2960958..2961209 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| VCD_RS13785 (VCD_003663) | 2961265..2962134 | + | 870 | WP_001205850.1 | hypothetical protein | - |
| VCD_RS13790 (VCD_003664) | 2962175..2962783 | + | 609 | WP_001918295.1 | hypothetical protein | - |
| VCD_RS13795 (VCD_003665) | 2962770..2963318 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| VCD_RS13800 (VCD_003666) | 2963315..2963614 | + | 300 | WP_000210564.1 | flagellar transcriptional regulator FlhD | - |
| VCD_RS13805 | 2963611..2964144 | + | 534 | WP_000566755.1 | hypothetical protein | - |
| VCD_RS13810 | 2964202..2964633 | + | 432 | WP_000183214.1 | hypothetical protein | - |
| VCD_RS13815 (VCD_003667) | 2964666..2968235 | - | 3570 | WP_000263683.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| VCD_RS13820 (VCD_003668) | 2968239..2969627 | - | 1389 | WP_000755289.1 | conjugal transfer protein TraH | - |
| VCD_RS13825 (VCD_003669) | 2969630..2970574 | - | 945 | WP_001260107.1 | thioredoxin family protein | - |
| VCD_RS13830 (VCD_003670) | 2970831..2971790 | - | 960 | WP_000198593.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| VCD_RS13835 (VCD_003671) | 2972078..2972551 | + | 474 | WP_000777554.1 | Dihydrofolate reductase type 1 | ARG |
| VCD_RS13840 | 2972686..2973081 | + | 396 | WP_000096366.1 | hypothetical protein | - |
| VCD_RS13845 | 2973279..2973689 | + | 411 | WP_000592337.1 | helix-turn-helix transcriptional regulator | - |
| VCD_RS13850 (VCD_003672) | 2973826..2974122 | + | 297 | WP_001919795.1 | DUF1801 domain-containing protein | - |
| VCD_RS13855 (VCD_003673) | 2974222..2974923 | + | 702 | WP_001901434.1 | helix-turn-helix transcriptional regulator | - |
| VCD_RS20175 | 2974920..2975324 | - | 405 | WP_000023760.1 | VOC family protein | - |
| VCD_RS13865 (VCD_003674) | 2975596..2976303 | - | 708 | WP_000989526.1 | hypothetical protein | - |
| VCD_RS13870 (VCD_003675) | 2976393..2977466 | - | 1074 | WP_001207590.1 | toprim domain-containing protein | - |
| VCD_RS13875 (VCD_003676) | 2977557..2977898 | - | 342 | WP_001081787.1 | hypothetical protein | - |
| VCD_RS13880 (VCD_003677) | 2977898..2978395 | - | 498 | WP_000797297.1 | DNA repair protein RadC | - |
| VCD_RS13885 (VCD_003678) | 2978480..2980135 | - | 1656 | WP_001016320.1 | VWA domain-containing protein | - |
| VCD_RS13890 (VCD_003679) | 2980205..2980645 | - | 441 | WP_001192023.1 | hypothetical protein | - |
| VCD_RS13895 (VCD_003680) | 2980707..2981660 | - | 954 | WP_000027441.1 | DUF3150 domain-containing protein | - |
| VCD_RS13900 (VCD_003681) | 2981759..2982526 | - | 768 | WP_000970191.1 | hypothetical protein | - |
| VCD_RS13905 (VCD_003682) | 2982526..2983485 | - | 960 | WP_000139694.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| VCD_RS13910 (VCD_003683) | 2983695..2984711 | - | 1017 | WP_000862954.1 | YqaJ viral recombinase family protein | - |
| VCD_RS21020 (VCD_003684) | 2984772..2984915 | - | 144 | WP_000167276.1 | hypothetical protein | - |
| VCD_RS13915 (VCD_003685) | 2984997..2985815 | - | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| VCD_RS13920 (VCD_003686) | 2985895..2986314 | - | 420 | WP_000795984.1 | single-stranded DNA-binding protein | - |
| VCD_RS13925 (VCD_003687) | 2986330..2986656 | - | 327 | WP_000455722.1 | hypothetical protein | - |
| VCD_RS13930 (VCD_003688) | 2987024..2987626 | + | 603 | WP_000035788.1 | hypothetical protein | - |
| VCD_RS13935 (VCD_003689) | 2987717..2988379 | - | 663 | WP_000342215.1 | hypothetical protein | - |
| VCD_RS13940 (VCD_003690) | 2988410..2988742 | - | 333 | WP_001132435.1 | hypothetical protein | - |
| VCD_RS13945 (VCD_003691) | 2988974..2992666 | - | 3693 | WP_000805219.1 | conjugal transfer protein TraN | - |
| VCD_RS13950 (VCD_003692) | 2992669..2993697 | - | 1029 | WP_000735888.1 | TraU family protein | - |
| VCD_RS13955 (VCD_003693) | 2993681..2994805 | - | 1125 | WP_001253262.1 | hypothetical protein | - |
| VCD_RS13960 (VCD_003694) | 2994816..2995328 | - | 513 | WP_001166557.1 | S26 family signal peptidase | - |
| VCD_RS13965 (VCD_003695) | 2995312..2995659 | - | 348 | WP_001044649.1 | hypothetical protein | - |
| VCD_RS13970 (VCD_003696) | 2995652..2998051 | - | 2400 | WP_000648043.1 | type IV secretion system protein TraC | - |
| VCD_RS13975 (VCD_003697) | 2998051..2998743 | - | 693 | WP_001228924.1 | DsbC family protein | - |
| VCD_RS13980 (VCD_003698) | 2998888..3000333 | - | 1446 | WP_000369162.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| VCD_RS13985 (VCD_003699) | 3000336..3001868 | - | 1533 | WP_001048895.1 | phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein | - |
| VCD_RS13990 (VCD_003700) | 3001881..3002990 | - | 1110 | WP_000076135.1 | hypothetical protein | - |
| VCD_RS13995 (VCD_003701) | 3002987..3005716 | - | 2730 | WP_001901413.1 | AAA family ATPase | - |
| VCD_RS14000 (VCD_003702) | 3006281..3007219 | - | 939 | WP_000356586.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| VCD_RS14005 (VCD_003703) | 3007212..3008003 | - | 792 | WP_002026815.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| VCD_RS14010 (VCD_003704) | 3008223..3008609 | - | 387 | WP_000180225.1 | hypothetical protein | - |
| VCD_RS14015 (VCD_003705) | 3008606..3009178 | - | 573 | WP_001901415.1 | type IV conjugative transfer system lipoprotein TraV | - |
| VCD_RS14020 (VCD_003706) | 3009253..3010542 | - | 1290 | WP_000647307.1 | TraB/VirB10 family protein | - |
| VCD_RS14025 (VCD_003707) | 3010542..3011441 | - | 900 | WP_001901416.1 | type-F conjugative transfer system secretin TraK | - |
| VCD_RS14030 (VCD_003708) | 3011425..3012051 | - | 627 | WP_000667167.1 | hypothetical protein | - |
| VCD_RS14035 (VCD_003709) | 3012048..3012329 | - | 282 | WP_000433889.1 | type IV conjugative transfer system protein TraL | - |
| VCD_RS14045 (VCD_003710) | 3012618..3013205 | + | 588 | WP_001167483.1 | hypothetical protein | - |
| VCD_RS14050 (VCD_003711) | 3013232..3013867 | - | 636 | WP_000033754.1 | DUF4400 domain-containing protein | - |
| VCD_RS14055 (VCD_003712) | 3013854..3014414 | - | 561 | WP_000546513.1 | hypothetical protein | - |
| VCD_RS14060 (VCD_003713) | 3014424..3016244 | - | 1821 | WP_000661885.1 | conjugative transfer system coupling protein TraD | - |
| VCD_RS14065 (VCD_003714) | 3016293..3018443 | - | 2151 | WP_000475921.1 | TraI domain-containing protein | - |
| VCD_RS14070 (VCD_003715) | 3018598..3021249 | - | 2652 | WP_000494310.1 | AAA family ATPase | - |
| VCD_RS14075 (VCD_003716) | 3021293..3023323 | - | 2031 | WP_196492902.1 | protease Lon-related BREX system protein BrxL | - |
| VCD_RS14080 (VCD_003717) | 3023385..3026042 | - | 2658 | WP_001167231.1 | BREX-1 system phosphatase PglZ type A | - |
| VCD_RS14085 (VCD_003718) | 3026042..3029668 | - | 3627 | WP_001095580.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| VCD_RS14090 (VCD_003719) | 3029684..3031447 | - | 1764 | WP_000283752.1 | DUF262 domain-containing protein | - |
| VCD_RS14095 (VCD_003720) | 3031464..3035141 | - | 3678 | WP_000687848.1 | BREX system P-loop protein BrxC | - |
| VCD_RS14100 (VCD_003721) | 3035160..3035744 | - | 585 | WP_000645939.1 | DUF1788 domain-containing protein | - |
| VCD_RS14105 (VCD_003722) | 3035741..3036340 | - | 600 | WP_001021937.1 | DUF1819 family protein | - |
| VCD_RS14110 (VCD_003723) | 3036350..3037276 | - | 927 | WP_000617210.1 | WYL domain-containing protein | - |
| VCD_RS14115 (VCD_003724) | 3037345..3037659 | - | 315 | WP_000284113.1 | hypothetical protein | - |
| VCD_RS14120 (VCD_003725) | 3037747..3038652 | - | 906 | WP_000196208.1 | DNA polymerase III subunit epsilon | - |
| VCD_RS14125 | 3039035..3039292 | - | 258 | WP_000182836.1 | hypothetical protein | - |
| VCD_RS14130 (VCD_003726) | 3039291..3039740 | + | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| VCD_RS14135 (VCD_003727) | 3039748..3039981 | + | 234 | Protein_2660 | DNA polymerase V subunit UmuC | - |
| VCD_RS14140 (VCD_003728) | 3040671..3041975 | - | 1305 | Protein_2661 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| VCD_RS14145 (VCD_003730) | 3042446..3043261 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| VCD_RS14150 (VCD_003731) | 3043322..3044125 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| VCD_RS14155 (VCD_003732) | 3044125..3044961 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| VCD_RS14160 | 3045212..3045589 | - | 378 | WP_000203935.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| VCD_RS14165 (VCD_003734) | 3045633..3046655 | - | 1023 | WP_000083351.1 | cation diffusion facilitator family transporter | - |
| VCD_RS14170 (VCD_003735) | 3046790..3047182 | - | 393 | Protein_2667 | MFS transporter | - |
| VCD_RS14175 (VCD_003736) | 3047349..3047516 | + | 168 | Protein_2668 | phosphotransferase | - |
| VCD_RS21025 | 3047488..3047652 | + | 165 | Protein_2669 | relaxase | - |
| VCD_RS14180 (VCD_003737) | 3047684..3048334 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| VCD_RS14185 (VCD_003738) | 3048440..3049639 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| VCD_RS14190 (VCD_003739) | 3049891..3050196 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| VCD_RS14195 (VCD_003740) | 3050224..3051438 | - | 1215 | WP_000214119.1 | Bicyclomycin resistance protein | ARG |
| VCD_RS21030 | 3051655..3052101 | - | 447 | Protein_2674 | DUF3363 domain-containing protein | - |
| VCD_RS14205 (VCD_003742) | 3052570..3054063 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| VCD_RS21035 | 3054175..3054366 | - | 192 | Protein_2676 | hypothetical protein | - |
| VCD_RS14215 (VCD_003743) | 3054481..3057459 | - | 2979 | WP_000985631.1 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| VCD_RS14220 | 3057597..3058175 | - | 579 | Protein_2678 | Tn3 family transposase TnpA_IS3000 | Transposase |
| VCD_RS14225 (VCD_003745) | 3058579..3059622 | + | 1044 | Protein_2679 | translesion error-prone DNA polymerase V subunit UmuC | - |
| VCD_RS14230 (VCD_003746) | 3059633..3060076 | - | 444 | WP_000348524.1 | hypothetical protein | - |
| VCD_RS14235 (VCD_003748) | 3060541..3061515 | + | 975 | WP_000497807.1 | ParM/StbA family protein | - |
| VCD_RS14240 (VCD_003749) | 3061518..3061787 | + | 270 | WP_001995600.1 | hypothetical protein | - |
| VCD_RS14245 (VCD_003750) | 3061789..3063030 | + | 1242 | WP_001218618.1 | Prophage integrase IntS ; Integrase | Integrase |
| VCD_RS14250 (VCD_003751) | 3063160..3065178 | - | 2019 | WP_000211147.1 | ATP-binding protein | - |
| VCD_RS14255 | 3065324..3065512 | - | 189 | WP_000127615.1 | hypothetical protein | - |
| VCD_RS21040 (VCD_003752) | 3065951..3066049 | - | 99 | WP_001910883.1 | hypothetical protein | - |
| VCD_RS14260 (VCD_003753) | 3066253..3068310 | + | 2058 | WP_000160066.1 | hypothetical protein | VF |
| VCD_RS14265 (VCD_003754) | 3068299..3068748 | - | 450 | WP_000214238.1 | [Ribosomal protein S18]-alanine N-acetyltransferase | VF |
| VCD_RS14270 (VCD_003755) | 3068745..3069152 | - | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| VCD_RS14275 (VCD_003756) | 3069263..3069766 | - | 504 | WP_000908540.1 | N-acetyltransferase | - |
| VCD_RS14280 (VCD_003757) | 3069750..3070277 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| VCD_RS14285 (VCD_003758) | 3070510..3072564 | + | 2055 | WP_001111411.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| VCD_RS14290 (VCD_003759) | 3072672..3073685 | + | 1014 | WP_000421327.1 | U32 family peptidase | - |
| VCD_RS14295 (VCD_003760) | 3073697..3074575 | + | 879 | WP_000872504.1 | U32 family peptidase | - |
| VCD_RS14300 (VCD_003761) | 3074628..3075965 | - | 1338 | WP_000981941.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| VCD_RS14305 (VCD_003762) | 3076012..3076419 | - | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|