MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 52634 bp
Accession: NC_011989 Location: 559226..611859 Organism: Agrobacterium vitis S4 Replicon: chromosome
Accession: NC_011989 Location: 559226..611859 Organism: Agrobacterium vitis S4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVI_RS02580 () | 554492..554995 | - | 504 | WP_015914883.1 | low molecular weight phosphatase family protein | - |
| AVI_RS02585 () | 555006..555479 | - | 474 | WP_015914884.1 | UPF0262 family protein | - |
| AVI_RS02590 () | 555483..556781 | - | 1299 | WP_015914885.1 | histidinol dehydrogenase | - |
| AVI_RS02595 () | 556816..557271 | - | 456 | WP_015914886.1 | DUF2948 family protein | - |
| AVI_RS02600 () | 557371..558663 | - | 1293 | WP_015914887.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| AVI_RS02605 () | 558798..559010 | - | 213 | WP_085946609.1 | hypothetical protein | - |
| AVI_RS29450 () | 559250..559540 | - | 291 | WP_080516948.1 | hypothetical protein | - |
| AVI_RS28935 () | 559611..560363 | + | 753 | WP_139192447.1 | hypothetical protein | - |
| AVI_RS02620 () | 560424..561521 | - | 1098 | WP_015914890.1 | IS630 family transposase ISBj5 | Transposase |
| AVI_RS29455 () | 561680..562024 | - | 345 | WP_015917605.1 | HNH endonuclease | - |
| AVI_RS02625 () | 562782..563984 | + | 1203 | WP_015914891.1 | SIR2 family protein | - |
| AVI_RS02630 () | 563971..566100 | + | 2130 | WP_015914892.1 | DUF87 domain-containing protein | - |
| AVI_RS02635 () | 566102..567139 | + | 1038 | WP_041696167.1 | hypothetical protein | - |
| AVI_RS02640 () | 567360..567950 | - | 591 | WP_015914893.1 | TetR/AcrR family transcriptional regulator | - |
| AVI_RS02645 () | 568071..568496 | + | 426 | WP_015914894.1 | tautomerase family protein | - |
| AVI_RS02650 () | 568575..568970 | + | 396 | WP_015914895.1 | VOC family protein | - |
| AVI_RS02655 () | 569268..569900 | + | 633 | WP_015914896.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| AVI_RS02660 () | 570317..570907 | + | 591 | WP_015914897.1 | TetR family transcriptional regulator | - |
| AVI_RS02665 () | 570927..571211 | + | 285 | WP_015914898.1 | hypothetical protein | - |
| AVI_RS02670 () | 571215..571822 | + | 608 | Protein_523 | DNA-3-methyladenine glycosylase I | - |
| AVI_RS30950 () | 572039..572386 | - | 348 | WP_187152370.1 | hypothetical protein | - |
| AVI_RS02680 () | 572391..573230 | - | 840 | WP_041696171.1 | MBL fold metallo-hydrolase | - |
| AVI_RS02685 () | 573252..573578 | - | 327 | WP_015914901.1 | hypothetical protein | - |
| AVI_RS02690 () | 573584..574129 | - | 546 | WP_015914902.1 | hypothetical protein | - |
| AVI_RS02695 () | 574298..575197 | + | 900 | WP_015914903.1 | Glycine cleavage system transcriptional activator | VF |
| AVI_RS02705 () | 576187..576819 | - | 633 | WP_041696175.1 | hypothetical protein | - |
| AVI_RS02710 () | 576893..577795 | + | 903 | WP_015914905.1 | hypothetical protein | - |
| AVI_RS02715 () | 577838..578497 | + | 660 | WP_015914906.1 | hypothetical protein | - |
| AVI_RS02720 () | 578895..580172 | + | 1278 | WP_015914907.1 | ATP-binding protein | - |
| AVI_RS02725 () | 580497..581183 | - | 687 | WP_015914908.1 | hypothetical protein | - |
| AVI_RS02730 () | 581318..581566 | + | 249 | WP_041696179.1 | helix-turn-helix domain-containing protein | - |
| AVI_RS02735 () | 581652..581999 | - | 348 | WP_015914909.1 | hypothetical protein | - |
| AVI_RS02740 () | 581996..583660 | - | 1665 | WP_015914910.1 | Conjugal transfer protein TraG | VF |
| AVI_RS02745 () | 583657..583989 | - | 333 | WP_041696181.1 | hypothetical protein | - |
| AVI_RS02750 () | 584243..587560 | + | 3318 | WP_015914911.1 | Ti-type conjugative transfer relaxase TraA | - |
| AVI_RS02755 () | 587844..589361 | + | 1518 | WP_015914912.1 | IS21 family transposase ISThsp10 | Transposase |
| AVI_RS02760 () | 589351..590145 | + | 795 | WP_015914913.1 | IS21 family transposase ISRsp3 | Transposase |
| AVI_RS29465 () | 590221..590403 | - | 183 | Protein_541 | hypothetical protein | - |
| AVI_RS02765 () | 590465..590590 | + | 126 | Protein_542 | transposase | - |
| AVI_RS02770 () | 590874..591326 | + | 453 | WP_015914914.1 | IS66 family transposase ISAli15 | Transposase |
| AVI_RS02775 () | 591323..591676 | + | 354 | WP_012650519.1 | IS66 family transposase ISRsp1 | Transposase |
| AVI_RS02780 () | 591722..593380 | + | 1659 | WP_015914915.1 | IS66 family transposase ISRsp1 | Transposase |
| AVI_RS30955 () | 593361..593594 | - | 234 | WP_012650518.1 | hypothetical protein | - |
| AVI_RS30960 () | 593691..593933 | + | 243 | WP_156753168.1 | IS66 family transposase IS71 | Transposase |
| AVI_RS30435 () | 593930..594283 | + | 354 | WP_015914916.1 | IS66 family transposase ISRel8 | Transposase |
| AVI_RS02800 () | 594353..595966 | + | 1614 | WP_015914917.1 | IS66 family transposase ISRel8 | Transposase |
| AVI_RS02805 () | 596023..596295 | + | 273 | WP_041696190.1 | hypothetical protein | - |
| AVI_RS02810 () | 596793..598874 | - | 2082 | WP_015914920.1 | S8 family serine peptidase | - |
| AVI_RS29470 () | 598862..599641 | - | 780 | WP_187152371.1 | trypsin-like serine protease | - |
| AVI_RS30440 () | 599955..600236 | + | 282 | WP_139192414.1 | hypothetical protein | - |
| AVI_RS02815 () | 600364..600570 | - | 207 | WP_015914921.1 | hypothetical protein | - |
| AVI_RS29475 () | 600686..601081 | + | 396 | WP_187152372.1 | TetR/AcrR family transcriptional regulator C-terminal ligand-binding domain-containing protein | - |
| AVI_RS30965 () | 601033..601914 | + | 882 | WP_041696194.1 | hypothetical protein | - |
| AVI_RS02825 () | 602223..602606 | - | 384 | WP_015914923.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| AVI_RS02830 () | 602603..602803 | - | 201 | WP_015914924.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| AVI_RS02835 () | 603058..603726 | - | 669 | WP_139192415.1 | hypothetical protein | - |
| AVI_RS02840 () | 604211..607426 | - | 3216 | WP_015914925.1 | metallophosphoesterase | - |
| AVI_RS02845 () | 607855..608529 | + | 675 | WP_015914926.1 | Protein virC1 | VF |
| AVI_RS02850 () | 608526..608816 | + | 291 | WP_041696197.1 | hypothetical protein | - |
| AVI_RS29485 () | 609303..610066 | + | 764 | WP_085946585.1 | IS5 family transposase ISRel11 | Transposase |
| AVI_RS02870 () | 610366..610596 | + | 231 | WP_139192416.1 | hypothetical protein | - |
| AVI_RS02875 () | 610760..611791 | + | 1032 | WP_015914927.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| AVI_RS02885 () | 612093..613373 | - | 1281 | WP_041696206.1 | hypothetical protein | - |
| AVI_RS02890 () | 613398..614051 | - | 654 | WP_015914929.1 | ABC transporter ATP-binding protein | - |
| AVI_RS02895 () | 614054..615265 | - | 1212 | WP_139191280.1 | hypothetical protein | - |
| AVI_RS02900 () | 615481..616452 | - | 972 | WP_041696208.1 | glycosyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|