MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 159132 bp
Accession: NC_011748 Location: 3350786..3509917 Organism: Escherichia coli 55989 Replicon: chromosome
Accession: NC_011748 Location: 3350786..3509917 Organism: Escherichia coli 55989 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC55989_RS16795 () | 3346462..3347442 | + | 981 | WP_001273465.1 | ATP-binding protein | - |
| EC55989_RS16800 () | 3347452..3349839 | + | 2388 | WP_000126412.1 | S8 family peptidase | - |
| EC55989_RS16805 () | 3349849..3351477 | + | 1629 | WP_000105162.1 | site-specific DNA-methyltransferase | - |
| EC55989_RS16810 () | 3351480..3354350 | + | 2871 | WP_000081335.1 | DEAD/DEAH box helicase family protein | - |
| EC55989_RS16815 () | 3354439..3354732 | + | 294 | WP_001091149.1 | hypothetical protein | - |
| EC55989_RS16820 () | 3354802..3355059 | + | 258 | Protein_3192 | IS3 family transposase IS911 | Transposase |
| EC55989_RS16825 () | 3355072..3356223 | - | 1152 | WP_001254932.1 | IS30 family transposase IS30D | Transposase |
| EC55989_RS29440 () | 3356288..3356647 | + | 360 | Protein_3194 | IS3 family transposase | - |
| EC55989_RS16830 () | 3356642..3357505 | + | 864 | Protein_3195 | IS110 family transposase ISEc45 | Transposase |
| EC55989_RS16835 () | 3357759..3359183 | - | 1425 | Protein_3196 | IS66 family transposase ISEc43 | Transposase |
| EC55989_RS16840 () | 3359214..3359564 | - | 351 | WP_000624688.1 | IS66 family transposase ISEc47 | Transposase |
| EC55989_RS16845 () | 3359561..3359995 | - | 435 | WP_001309734.1 | IS66 family transposase ISEc43 | Transposase |
| EC55989_RS16850 () | 3360083..3360535 | + | 453 | Protein_3199 | IS66 family transposase ISEc8 | Transposase |
| EC55989_RS16855 () | 3360574..3360816 | + | 243 | Protein_3200 | IS256 family transposase IS1414 | Transposase |
| EC55989_RS16860 () | 3360967..3365085 | - | 4119 | WP_001045649.1 | Serine protease pic autotransporter | VF |
| EC55989_RS16865 () | 3365547..3366035 | - | 489 | Protein_3202 | IS3 family transposase ISLad1 | Transposase |
| EC55989_RS16870 () | 3366116..3367624 | - | 1509 | WP_001189118.1 | group II intron reverse transcriptase/maturase | - |
| EC55989_RS28305 () | 3368297..3369034 | - | 738 | Protein_3204 | IS3 family transposase IS1203 | Transposase |
| EC55989_RS16895 () | 3369231..3371780 | - | 2550 | WP_000029849.1 | Protein ClpV1 | VF |
| EC55989_RS16900 () | 3371784..3375188 | - | 3405 | WP_024174616.1 | type VI secretion protein | - |
| EC55989_RS16905 () | 3375194..3375784 | - | 591 | WP_001028111.1 | hypothetical protein | VF |
| EC55989_RS16915 () | 3376123..3377535 | - | 1413 | WP_001154665.1 | type VI secretion system baseplate subunit TssK | - |
| EC55989_RS16920 () | 3377554..3378105 | - | 552 | WP_000152747.1 | type VI secretion lipoprotein TssJ | - |
| EC55989_RS16925 () | 3378113..3379189 | - | 1077 | WP_001033155.1 | hypothetical protein | VF |
| EC55989_RS16930 () | 3379193..3379492 | - | 300 | WP_001390299.1 | PAAR domain-containing protein | - |
| EC55989_RS16935 () | 3379502..3379969 | - | 468 | WP_000005080.1 | hypothetical protein | - |
| EC55989_RS16940 () | 3379980..3381962 | - | 1983 | WP_000198270.1 | type VI secretion system tip protein VgrG | - |
| EC55989_RS16945 () | 3381975..3382907 | - | 933 | WP_001173973.1 | type VI secretion system baseplate subunit TssG | - |
| EC55989_RS16950 () | 3382898..3384700 | - | 1803 | WP_001390300.1 | type VI secretion system baseplate subunit TssF | - |
| EC55989_RS16955 () | 3384693..3385115 | - | 423 | WP_000555549.1 | hypothetical protein | - |
| EC55989_RS16960 () | 3385125..3385631 | - | 507 | WP_000233190.1 | type VI secretion system protein AaiC/Hcp2 | - |
| EC55989_RS16965 () | 3385641..3387119 | - | 1479 | WP_000215053.1 | hypothetical protein | VF |
| EC55989_RS16970 () | 3387122..3387598 | - | 477 | WP_000072549.1 | hypothetical protein | VF |
| EC55989_RS16975 () | 3388044..3389252 | + | 1209 | WP_001352368.1 | IS4 family transposase IS10R | Transposase |
| EC55989_RS26980 () | 3389332..3390348 | + | 1017 | Protein_3221 | IS630 family transposase | - |
| EC55989_RS26990 () | 3390354..3390479 | - | 126 | WP_001420591.1 | hypothetical protein | - |
| EC55989_RS16985 () | 3390457..3390843 | - | 387 | WP_014966195.1 | hypothetical protein | - |
| EC55989_RS16995 () | 3391053..3391632 | + | 580 | Protein_3224 | transposase family protein | - |
| EC55989_RS17000 () | 3391663..3391986 | - | 324 | WP_001387054.1 | hypothetical protein | - |
| EC55989_RS17005 () | 3392052..3392696 | - | 645 | WP_001387055.1 | hypothetical protein | - |
| EC55989_RS17010 () | 3392717..3392986 | - | 270 | WP_000226517.1 | PerC family transcriptional regulator | - |
| EC55989_RS17015 () | 3393065..3393709 | - | 645 | WP_000502863.1 | ParB N-terminal domain-containing protein | - |
| EC55989_RS17020 () | 3393694..3394926 | - | 1233 | WP_001204642.1 | phosphoadenosine phosphosulfate reductase | - |
| EC55989_RS17025 () | 3394967..3395797 | - | 831 | WP_000370895.1 | hypothetical protein | - |
| EC55989_RS17030 () | 3395800..3396360 | - | 561 | WP_000586175.1 | hypothetical protein | - |
| EC55989_RS17035 () | 3396575..3397942 | - | 1368 | WP_000200211.1 | type VI secretion system ImpA family N-terminal domain-containing protein | - |
| EC55989_RS17045 () | 3398367..3400112 | - | 1746 | WP_001390303.1 | AAA family ATPase | - |
| EC55989_RS17050 () | 3400348..3401550 | - | 1203 | WP_044168561.1 | GIY-YIG nuclease family protein | - |
| EC55989_RS17055 () | 3401747..3402148 | - | 402 | WP_001403987.1 | hypothetical protein | - |
| EC55989_RS17060 () | 3402305..3402736 | - | 432 | WP_001137932.1 | type VI secretion system baseplate subunit TssE | - |
| EC55989_RS17065 () | 3402739..3403275 | - | 537 | WP_000974469.1 | hypothetical protein | VF |
| EC55989_RS17070 () | 3403256..3404356 | - | 1101 | WP_000553781.1 | hypothetical protein | VF |
| EC55989_RS17075 () | 3404311..3406074 | - | 1764 | WP_000342463.1 | hypothetical protein | VF |
| EC55989_RS17080 () | 3406082..3406774 | - | 693 | WP_000115357.1 | hypothetical protein | - |
| EC55989_RS17085 () | 3406776..3408374 | - | 1599 | WP_000146515.1 | hypothetical protein | VF |
| EC55989_RS17090 () | 3408374..3411763 | - | 3390 | WP_001037088.1 | hypothetical protein | VF |
| EC55989_RS17095 () | 3411756..3412904 | - | 1149 | WP_001403985.1 | hypothetical protein | - |
| EC55989_RS17100 () | 3412908..3413174 | - | 267 | WP_000033410.1 | hypothetical protein | VF |
| EC55989_RS17105 () | 3413206..3413883 | - | 678 | WP_000196357.1 | T6SS immunity phospholipase A1-binding lipoprotein Tli1-EAEC | - |
| EC55989_RS17110 () | 3414027..3414704 | - | 678 | WP_000196359.1 | T6SS immunity phospholipase A1-binding lipoprotein Tli1-EAEC | - |
| EC55989_RS17115 () | 3414724..3416406 | - | 1683 | WP_000170556.1 | hypothetical protein | VF |
| EC55989_RS17120 () | 3416403..3418928 | - | 2526 | WP_001054503.1 | Actin cross-linking toxin VgrG1 | VF |
| EC55989_RS17130 () | 3419451..3420017 | - | 567 | WP_000148361.1 | hypothetical protein | - |
| EC55989_RS17135 () | 3420014..3422671 | - | 2658 | WP_000431645.1 | Protein ClpV1 | VF |
| EC55989_RS17140 () | 3422840..3423331 | - | 492 | WP_001007313.1 | Major exported protein | VF |
| EC55989_RS17145 () | 3423337..3425067 | - | 1731 | WP_000558483.1 | Outer membrane porin F | VF |
| EC55989_RS17150 () | 3425070..3425723 | - | 654 | WP_001040045.1 | hypothetical protein | VF |
| EC55989_RS17155 () | 3425720..3427057 | - | 1338 | WP_000708637.1 | hypothetical protein | VF |
| EC55989_RS17160 () | 3427073..3428617 | - | 1545 | WP_000930191.1 | hypothetical protein | VF |
| EC55989_RS17165 () | 3428639..3429136 | - | 498 | WP_000098939.1 | hypothetical protein | VF |
| EC55989_RS17170 () | 3429643..3429834 | + | 192 | WP_001287796.1 | DUF4222 domain-containing protein | - |
| EC55989_RS17175 () | 3429887..3430120 | - | 234 | WP_000124181.1 | hypothetical protein | - |
| EC55989_RS17180 () | 3430216..3430839 | - | 624 | WP_001260266.1 | hypothetical protein | - |
| EC55989_RS17185 () | 3430960..3431142 | - | 183 | WP_001216313.1 | hypothetical protein | - |
| EC55989_RS17190 () | 3431148..3431567 | - | 420 | WP_001387059.1 | hypothetical protein | - |
| EC55989_RS17195 () | 3431557..3431940 | - | 384 | WP_000271022.1 | hypothetical protein | - |
| EC55989_RS29310 () | 3431912..3432070 | - | 159 | WP_000493525.1 | hypothetical protein | - |
| EC55989_RS17200 () | 3432108..3432677 | - | 570 | WP_000220727.1 | inovirus Gp2 family protein | - |
| EC55989_RS29315 () | 3432881..3433054 | + | 174 | WP_001387062.1 | hypothetical protein | - |
| EC55989_RS17205 () | 3433294..3433506 | - | 213 | WP_000453331.1 | hemolysin expression modulator Hha | - |
| EC55989_RS17210 () | 3434205..3434411 | + | 207 | WP_001095912.1 | AlpA family transcriptional regulator | - |
| EC55989_RS17215 () | 3434497..3435069 | + | 573 | WP_001170560.1 | hypothetical protein | - |
| EC55989_RS27010 () | 3435278..3435385 | + | 108 | Protein_3269 | IS1 family transposase | - |
| EC55989_RS17225 () | 3436564..3437583 | + | 1020 | WP_001403577.1 | hypothetical protein | - |
| EC55989_RS17230 () | 3437693..3438565 | + | 873 | WP_001069724.1 | GTPase family protein | - |
| EC55989_RS17235 () | 3438899..3442018 | + | 3120 | WP_000820381.1 | autotransporter adhesin Ag43 | - |
| EC55989_RS17240 () | 3442139..3444655 | + | 2517 | WP_001387066.1 | membrane protein | - |
| EC55989_RS17245 () | 3444731..3445186 | + | 456 | WP_000581502.1 | hypothetical protein | - |
| EC55989_RS17250 () | 3445265..3445498 | + | 234 | WP_001119729.1 | DUF905 family protein | - |
| EC55989_RS17255 () | 3445598..3446416 | + | 819 | WP_001234605.1 | DUF945 domain-containing protein | - |
| EC55989_RS17260 () | 3446718..3447191 | + | 474 | WP_000855081.1 | antirestriction protein | - |
| EC55989_RS17265 () | 3447207..3447683 | + | 477 | WP_001388380.1 | RadC family protein | - |
| EC55989_RS17270 () | 3447770..3447991 | + | 222 | WP_000692350.1 | DUF987 domain-containing protein | - |
| EC55989_RS17275 () | 3448071..3448448 | + | 378 | WP_001285617.1 | type IV toxin-antitoxin system toxin CbtA | Antitoxin Detail |
| EC55989_RS17280 () | 3448495..3448872 | + | 378 | WP_001094429.1 | TA system toxin CbtA family protein | Toxin Detail |
| EC55989_RS28945 () | 3448869..3449066 | + | 198 | Protein_3282 | hypothetical protein | - |
| EC55989_RS28950 () | 3449094..3449291 | + | 198 | WP_085949090.1 | DUF957 domain-containing protein | - |
| EC55989_RS17290 () | 3449376..3450218 | + | 843 | WP_001280493.1 | DUF4942 domain-containing protein | - |
| EC55989_RS17295 () | 3450499..3451035 | - | 537 | WP_000942795.1 | Type II secretion system protein M | VF |
| EC55989_RS17300 () | 3451037..3452215 | - | 1179 | WP_000094962.1 | Type II secretion system protein L | VF |
| EC55989_RS17305 () | 3452212..3453189 | - | 978 | WP_000633238.1 | Putative type II secretion system protein K | VF |
| EC55989_RS17310 () | 3453192..3453791 | - | 600 | WP_001255040.1 | Type II secretion system protein J | VF |
| EC55989_RS17315 () | 3453788..3454159 | - | 372 | WP_000820125.1 | Type II secretion system protein I | VF |
| EC55989_RS17320 () | 3454156..3454719 | - | 564 | WP_001115140.1 | Type II secretion system protein H | VF |
| EC55989_RS17325 () | 3454723..3455178 | - | 456 | WP_001087296.1 | Type II secretion system protein G | VF |
| EC55989_RS17330 () | 3455195..3456418 | - | 1224 | WP_001173453.1 | Type II secretion system protein F | VF |
| EC55989_RS17335 () | 3456418..3457911 | - | 1494 | WP_000249348.1 | Type II secretion system protein E | VF |
| EC55989_RS17340 () | 3457911..3459971 | - | 2061 | WP_000498829.1 | Type II secretion system protein D | VF |
| EC55989_RS17345 () | 3460001..3460960 | - | 960 | WP_000135063.1 | Type II secretion system protein C | VF |
| EC55989_RS17350 () | 3460978..3461388 | - | 411 | WP_001324279.1 | type II secretion system pilot lipoprotein GspS-beta | - |
| EC55989_RS17355 () | 3461454..3462263 | - | 810 | WP_001365924.1 | Leader peptidase PppA | VF |
| EC55989_RS17360 () | 3462403..3466968 | - | 4566 | WP_001034494.1 | hypothetical protein | VF |
| EC55989_RS17370 () | 3467454..3469136 | - | 1683 | WP_000259303.1 | glycolate permease GlcA | - |
| EC55989_RS17375 () | 3469492..3471663 | - | 2172 | WP_000084080.1 | malate synthase G | - |
| EC55989_RS17380 () | 3471685..3472089 | - | 405 | WP_000853256.1 | protein GlcG | - |
| EC55989_RS17385 () | 3472094..3473317 | - | 1224 | WP_001194680.1 | glycolate oxidase subunit GlcF | - |
| EC55989_RS17390 () | 3473328..3474380 | - | 1053 | WP_000943059.1 | glycolate oxidase subunit GlcE | - |
| EC55989_RS17395 () | 3474380..3475879 | - | 1500 | WP_000026117.1 | glycolate oxidase subunit GlcD | - |
| EC55989_RS17400 () | 3476130..3476705 | + | 576 | Protein_3305 | transcriptional regulator GlcC | - |
| EC55989_RS17405 () | 3476720..3477417 | - | 698 | Protein_3306 | IS1 family transposase IS1R | Transposase |
| EC55989_RS28955 () | 3477468..3477551 | + | 84 | Protein_3307 | acyl carrier protein | - |
| EC55989_RS17410 () | 3477551..3478723 | + | 1173 | WP_000524972.1 | 8-amino-7-oxononanoate synthase | VF |
| EC55989_RS17415 () | 3478758..3479837 | - | 1080 | WP_001307395.1 | LPS export ABC transporter permease LptG | - |
| EC55989_RS17420 () | 3479834..3480904 | - | 1071 | WP_000779661.1 | LPS export ABC transporter permease LptF | - |
| EC55989_RS17425 () | 3480935..3481495 | - | 561 | WP_001299422.1 | YtfJ family protein | - |
| EC55989_RS17430 () | 3481507..3482331 | - | 825 | WP_000984978.1 | hypothetical protein | - |
| EC55989_RS17435 () | 3482331..3483680 | - | 1350 | WP_000896880.1 | lipopolysaccharide biosynthesis protein | - |
| EC55989_RS17440 () | 3483726..3484484 | - | 759 | WP_000339532.1 | hypothetical protein | - |
| EC55989_RS17445 () | 3484516..3485229 | - | 714 | WP_001076097.1 | thymidylate kinase | - |
| EC55989_RS17450 () | 3485403..3486095 | + | 693 | WP_001190780.1 | thymidylate kinase | - |
| EC55989_RS17455 () | 3486144..3487643 | - | 1500 | WP_000933258.1 | inorganic phosphate transporter PitB | - |
| EC55989_RS17460 () | 3487935..3489794 | - | 1860 | WP_001297309.1 | bifunctional glutathionylspermidine amidase/synthase | - |
| EC55989_RS17465 () | 3489999..3490865 | + | 867 | WP_001387074.1 | glutathione-dependent disulfide-bond oxidoreductase | - |
| EC55989_RS17470 () | 3491165..3492145 | + | 981 | WP_000399648.1 | IS110 family transposase IS621 | Transposase |
| EC55989_RS17475 () | 3492267..3492515 | - | 249 | WP_000334896.1 | hydrogenase maturation factor HybG | - |
| EC55989_RS17480 () | 3492528..3492869 | - | 342 | WP_000544953.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| EC55989_RS17485 () | 3492862..3493350 | - | 489 | WP_000134014.1 | hydrogenase-2 assembly chaperone | - |
| EC55989_RS17490 () | 3493343..3493837 | - | 495 | WP_001221953.1 | HyaD/HybD family hydrogenase maturation endopeptidase | - |
| EC55989_RS17495 () | 3493837..3495540 | - | 1704 | WP_000083065.1 | hydrogenase 2 large subunit | - |
| EC55989_RS17500 () | 3495537..3496715 | - | 1179 | WP_000017703.1 | Ni/Fe-hydrogenase cytochrome b subunit | - |
| EC55989_RS17505 () | 3496705..3497691 | - | 987 | WP_001081870.1 | hydrogenase 2 operon protein HybA | - |
| EC55989_RS17510 () | 3497694..3498812 | - | 1119 | WP_000145410.1 | hydrogenase 2 small subunit | - |
| EC55989_RS17520 () | 3499001..3499288 | - | 288 | WP_001059136.1 | DUF2623 domain-containing protein | - |
| EC55989_RS17525 () | 3499407..3500294 | - | 888 | WP_001297303.1 | dienelactone hydrolase family protein | - |
| EC55989_RS17530 () | 3500451..3501491 | + | 1041 | WP_000262151.1 | L-glyceraldehyde 3-phosphate reductase | - |
| EC55989_RS17535 () | 3501531..3502025 | - | 495 | WP_000439331.1 | TIGR00645 family protein | - |
| EC55989_RS17540 () | 3502216..3503100 | + | 885 | WP_000018758.1 | putative oxidoreductase YghA | VF |
| EC55989_RS17545 () | 3503139..3503564 | - | 426 | WP_001240712.1 | TonB system transport protein ExbD | - |
| EC55989_RS17550 () | 3503571..3504305 | - | 735 | WP_000527844.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| EC55989_RS17560 () | 3504557..3505744 | + | 1188 | WP_001315867.1 | cystathionine beta-lyase | - |
| EC55989_RS17565 () | 3505884..3506543 | + | 660 | WP_000268419.1 | DedA family protein | - |
| EC55989_RS17570 () | 3506583..3507482 | - | 900 | WP_024174618.1 | DNA-binding transcriptional regulator YqhC | - |
| EC55989_RS17580 () | 3507676..3508839 | + | 1164 | WP_001058807.1 | alcohol dehydrogenase | - |
| EC55989_RS17585 () | 3508944..3509771 | + | 828 | WP_000013149.1 | 2,5-didehydrogluconate reductase DkgA | - |
| EC55989_RS17590 () | 3509971..3510897 | + | 927 | WP_000691598.1 | YbjP/YqhG family protein | - |
| EC55989_RS17595 () | 3510948..3511205 | + | 258 | WP_000848528.1 | lipoprotein YqhH | - |
| EC55989_RS17600 () | 3511248..3513467 | - | 2220 | WP_000095187.1 | YgiQ family radical SAM protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|