MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 83724 bp
Accession: NC_011498 Location: 449944..533667 Organism: Helicobacter pylori P12 Replicon: chromosome
Accession: NC_011498 Location: 449944..533667 Organism: Helicobacter pylori P12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPP12_RS02235 (HPP12_0433) | 445315..447342 | - | 2028 | WP_001078708.1 | RNA degradosome polyphosphate kinase | - |
| HPP12_RS02245 (HPP12_0434) | 448002..449183 | - | 1182 | WP_000163867.1 | restriction endonuclease subunit S | - |
| HPP12_RS02250 (HPP12_0435) | 449176..450807 | - | 1632 | WP_001133365.1 | class I SAM-dependent DNA methyltransferase | - |
| HPP12_RS02255 (HPP12_0436) | 450800..452026 | - | 1227 | Protein_434 | type I restriction endonuclease subunit R | - |
| HPP12_RS02260 (HPP12_0437) | 452423..453496 | + | 1074 | WP_001278367.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| HPP12_RS02265 (HPP12_0438) | 453578..454261 | - | 684 | WP_001153492.1 | hypothetical protein | - |
| HPP12_RS02270 (HPP12_0439) | 454334..455596 | - | 1263 | WP_000729967.1 | P-type conjugative transfer protein TrbL | - |
| HPP12_RS02275 (HPP12_0440) | 455598..455876 | - | 279 | WP_000477185.1 | hypothetical protein | - |
| HPP12_RS02280 (HPP12_0441) | 455928..457328 | - | 1401 | WP_000645654.1 | hypothetical protein | - |
| HPP12_RS02285 (HPP12_0443) | 457332..459272 | - | 1941 | Protein_440 | competence protein | - |
| HPP12_RS02290 (HPP12_0444) | 459405..460803 | - | 1399 | Protein_441 | hypothetical protein | - |
| HPP12_RS02295 (HPP12_0446) | 460810..461832 | - | 1023 | WP_001061501.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| HPP12_RS08800 | 461819..461971 | - | 153 | WP_001157185.1 | hypothetical protein | - |
| HPP12_RS02300 (HPP12_0447) | 462135..470522 | + | 8388 | WP_001169856.1 | SNF2-related protein | - |
| HPP12_RS02305 (HPP12_0448) | 470785..471441 | + | 657 | WP_000587389.1 | ParA family protein | - |
| HPP12_RS02310 (HPP12_0449) | 471523..471807 | + | 285 | WP_000394639.1 | hypothetical protein ; Integrase | Integrase |
| HPP12_RS02315 (HPP12_0450) | 471839..473017 | + | 1179 | WP_001044521.1 | hypothetical protein | - |
| HPP12_RS02320 (HPP12_0451) | 473042..474955 | - | 1914 | WP_001162729.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HPP12_RS02325 (HPP12_0452) | 475253..475567 | + | 315 | WP_000073118.1 | hypothetical protein | Antitoxin Detail |
| HPP12_RS02330 (HPP12_0453) | 475560..475841 | + | 282 | WP_000921941.1 | YafQ family addiction module toxin | Toxin Detail |
| HPP12_RS02335 (HPP12_0454) | 476105..477832 | - | 1728 | WP_001208212.1 | hypothetical protein | VF |
| HPP12_RS02340 (HPP12_0455) | 477833..478391 | - | 559 | Protein_452 | hypothetical protein | - |
| HPP12_RS02345 (HPP12_0456) | 478392..478682 | - | 291 | WP_000159813.1 | hypothetical protein | - |
| HPP12_RS02350 (HPP12_0457) | 478679..479134 | - | 456 | WP_000795435.1 | hypothetical protein | - |
| HPP12_RS02355 (HPP12_0458) | 479131..480072 | - | 942 | WP_000625138.1 | Type IV secretion system protein VirB11 | VF |
| HPP12_RS02360 (HPP12_0459) | 480072..480371 | - | 300 | WP_000660141.1 | hypothetical protein | - |
| HPP12_RS02365 (HPP12_0460) | 480368..480631 | - | 264 | WP_000564645.1 | hypothetical protein | - |
| HPP12_RS02370 (HPP12_0461) | 480624..480917 | - | 294 | WP_000671327.1 | hypothetical protein | - |
| HPP12_RS02375 (HPP12_0462) | 480987..482252 | - | 1266 | WP_000505564.1 | hypothetical protein | VF |
| HPP12_RS02380 (HPP12_0463) | 482252..483784 | - | 1533 | WP_000714769.1 | hypothetical protein | VF |
| HPP12_RS02385 (HPP12_0464) | 483784..484953 | - | 1170 | WP_000044724.1 | hypothetical protein | VF |
| HPP12_RS09155 | 485070..486338 | - | 1269 | WP_265101524.1 | DNA topoisomerase | - |
| HPP12_RS09160 | 486304..487092 | - | 789 | WP_265101522.1 | toprim domain-containing protein | - |
| HPP12_RS08995 | 487107..487634 | - | 528 | WP_227808917.1 | hypothetical protein | VF |
| HPP12_RS02400 (HPP12_0467) | 487880..489475 | - | 1596 | WP_227808901.1 | hypothetical protein | VF |
| HPP12_RS02405 (HPP12_0468) | 489522..489788 | - | 267 | WP_001196307.1 | hypothetical protein | - |
| HPP12_RS02410 (HPP12_0469) | 489789..490091 | - | 303 | WP_000850077.1 | hypothetical protein | - |
| HPP12_RS09000 (HPP12_0470) | 490088..490348 | - | 261 | WP_227808902.1 | hypothetical protein | - |
| HPP12_RS02415 (HPP12_0471) | 490433..491611 | - | 1179 | WP_000323319.1 | hypothetical protein | - |
| HPP12_RS02420 (HPP12_0472) | 491618..491911 | - | 294 | WP_001160306.1 | hypothetical protein | - |
| HPP12_RS08675 (HPP12_0473) | 491931..492710 | - | 780 | WP_001158056.1 | hypothetical protein | - |
| HPP12_RS09005 | 492744..493829 | - | 1086 | WP_000458208.1 | DEAD/DEAH box helicase family protein | - |
| HPP12_RS09165 | 493885..494016 | + | 132 | WP_001146223.1 | hypothetical protein | - |
| HPP12_RS09010 | 494000..494695 | - | 696 | WP_001146649.1 | type I restriction endonuclease | - |
| HPP12_RS02435 (HPP12_0474) | 494743..496638 | - | 1896 | WP_001116325.1 | motility associated factor glycosyltransferase family protein | - |
| HPP12_RS02440 (HPP12_0475) | 496664..497431 | - | 768 | WP_000402792.1 | TerB family tellurite resistance protein | - |
| HPP12_RS02445 (HPP12_0476) | 497441..497755 | - | 315 | WP_001861281.1 | hypothetical protein | - |
| HPP12_RS02450 (HPP12_0477) | 497757..499244 | - | 1488 | WP_000114692.1 | DUF5644 domain-containing protein | - |
| HPP12_RS02455 (HPP12_0478) | 499256..499744 | - | 489 | WP_001188643.1 | hypothetical protein | - |
| HPP12_RS02460 (HPP12_0479) | 499729..501465 | - | 1737 | WP_000662762.1 | M3 family oligoendopeptidase | - |
| HPP12_RS02465 (HPP12_0480) | 501563..502813 | - | 1251 | WP_000431931.1 | cation:proton antiporter | - |
| HPP12_RS09015 | 502966..503148 | - | 183 | WP_079990473.1 | hypothetical protein | - |
| HPP12_RS02470 (HPP12_0481) | 503132..503692 | - | 561 | WP_000595776.1 | hypothetical protein | VF |
| HPP12_RS09020 (HPP12_0482) | 503736..503897 | - | 162 | WP_000569744.1 | hypothetical protein | - |
| HPP12_RS02480 (HPP12_0483) | 503916..504656 | + | 741 | WP_000798898.1 | molybdate ABC transporter substrate-binding protein | - |
| HPP12_RS02485 (HPP12_0484) | 504678..505352 | + | 675 | WP_000349409.1 | molybdate ABC transporter permease subunit | - |
| HPP12_RS02490 (HPP12_0485) | 505349..506146 | + | 798 | WP_000588377.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HPP12_RS02495 (HPP12_0486) | 506265..507656 | - | 1392 | WP_000053249.1 | glutamate--tRNA ligase | - |
| HPP12_RS02500 (HPP12_0487) | 507773..508882 | + | 1110 | WP_001160305.1 | hypothetical protein | VF |
| HPP12_RS02505 (HPP12_0488) | 508891..510528 | + | 1638 | WP_001139701.1 | class I SAM-dependent methyltransferase | - |
| HPP12_RS02510 (HPP12_0489) | 510494..511336 | + | 843 | WP_000546650.1 | hypothetical protein | VF |
| HPP12_RS02515 (HPP12_0490) | 511382..513181 | + | 1800 | WP_000790194.1 | translational GTPase TypA | - |
| HPP12_RS02520 (HPP12_0491) | 513187..513734 | + | 548 | Protein_493 | DNA cytosine methyltransferase | - |
| HPP12_RS02525 (HPP12_0492) | 513767..514711 | - | 945 | WP_000719590.1 | catalase | - |
| HPP12_RS02530 (HPP12_0493) | 514988..516574 | + | 1587 | WP_000768632.1 | outer membrane beta-barrel protein HofC | - |
| HPP12_RS02535 (HPP12_0494) | 516601..518046 | + | 1446 | WP_001115602.1 | outer membrane beta-barrel protein HofD | - |
| HPP12_RS02540 | 518276..518476 | - | 201 | WP_041926040.1 | hypothetical protein | - |
| HPP12_RS02545 (HPP12_0495) | 518445..521207 | + | 2763 | WP_000775307.1 | DUF3519 domain-containing protein | - |
| HPP12_RS02550 (HPP12_0496) | 521220..521977 | + | 758 | Protein_499 | ATPase | - |
| HPP12_RS02560 (HPP12_0498) | 522350..523486 | - | 1137 | WP_000461979.1 | NAD-binding protein | - |
| HPP12_RS02565 (HPP12_0499) | 523669..523857 | - | 189 | WP_001118998.1 | 50S ribosomal protein L28 | - |
| HPP12_RS02570 (HPP12_0500) | 523957..524793 | - | 837 | WP_000442239.1 | hypothetical protein | VF |
| HPP12_RS02575 (HPP12_0501) | 524923..525984 | + | 1062 | WP_012569324.1 | phospho-N-acetylmuramoyl-pentapeptide- transferase | - |
| HPP12_RS02580 (HPP12_0502) | 525986..527254 | + | 1269 | WP_000703465.1 | UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase | - |
| HPP12_RS02585 (HPP12_0503) | 527251..527511 | - | 261 | WP_001138775.1 | DUF493 family protein | - |
| HPP12_RS02590 (HPP12_0504) | 527501..527902 | - | 402 | WP_001203796.1 | acyl-CoA thioesterase YbgC | - |
| HPP12_RS02595 (HPP12_0505) | 528133..529461 | + | 1329 | WP_000526583.1 | sodium-dependent transporter | - |
| HPP12_RS02600 (HPP12_0506) | 529472..530800 | + | 1329 | WP_000514521.1 | sodium-dependent transporter | - |
| HPP12_RS02605 (HPP12_0507) | 530815..531882 | + | 1068 | WP_000836113.1 | phospholipase A | - |
| HPP12_RS02610 (HPP12_0508) | 531938..533062 | + | 1125 | WP_000704202.1 | DNA polymerase III subunit beta | - |
| HPP12_RS02615 (HPP12_0509) | 533075..535396 | + | 2322 | WP_001182030.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| HPP12_RS02620 (HPP12_0510) | 535442..536434 | + | 993 | WP_001048400.1 | hypothetical protein | - |
| HPP12_RS02625 (HPP12_0511) | 536421..537176 | + | 756 | WP_001048935.1 | R.Pab1 family restriction endonuclease | - |
| HPP12_RS02630 (HPP12_0512) | 537385..538596 | + | 1212 | WP_000231057.1 | peptidoglycan DD-metalloendopeptidase Csd1 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|