MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 91158 bp
Accession: NC_011413 Location: 1..91158 Organism: Escherichia coli SE11 Replicon: plasmid pSE11-2
Accession: NC_011413 Location: 1..91158 Organism: Escherichia coli SE11 Replicon: plasmid pSE11-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECSE_RS25045 () | 1..765 | + | 765 | WP_012564967.1 | Chaperone protein caf1M | VF |
| ECSE_RS25050 () | 795..3302 | + | 2508 | WP_000877656.1 | F1 capsule-anchoring protein | VF |
| ECSE_RS25055 () | 3434..3913 | + | 480 | WP_000721504.1 | F1 capsule antigen | VF |
| ECSE_RS25060 () | 3941..4420 | + | 480 | WP_000734263.1 | F1 capsule antigen | VF |
| ECSE_RS29070 () | 4794..4970 | + | 177 | WP_024210470.1 | F1 capsule antigen | VF |
| ECSE_RS25070 () | 5101..5691 | - | 591 | WP_000194546.1 | hypothetical protein | - |
| ECSE_RS25075 () | 5691..5948 | - | 258 | WP_000343099.1 | hypothetical protein | - |
| ECSE_RS25080 () | 6543..6761 | + | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| ECSE_RS25085 () | 6763..7068 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| ECSE_RS25090 () | 7069..7875 | + | 807 | WP_000016975.1 | site-specific integrase | - |
| ECSE_RS25095 () | 8562..9293 | - | 732 | WP_000504263.1 | replication initiation protein | - |
| ECSE_RS25100 () | 9914..11119 | + | 1206 | WP_001401628.1 | Plasmid partition protein A | VF |
| ECSE_RS25105 () | 11116..12087 | + | 972 | WP_001233384.1 | ParB/RepB/Spo0J family partition protein | - |
| ECSE_RS25110 () | 12224..13369 | - | 1146 | Protein_13 | translesion error-prone DNA polymerase V subunit UmuC | - |
| ECSE_RS25115 () | 13432..14430 | + | 999 | WP_000549075.1 | IS91 family transposase ISMno24 | Transposase |
| ECSE_RS25120 () | 14427..15338 | + | 912 | WP_024210471.1 | hypothetical protein | - |
| ECSE_RS25125 () | 15415..16638 | + | 1224 | WP_049768383.1 | tyrosine-type recombinase/integrase | - |
| ECSE_RS25130 () | 16685..17203 | - | 519 | WP_000993248.1 | hypothetical protein | - |
| ECSE_RS25135 () | 17216..18070 | - | 855 | WP_001280973.1 | WYL domain-containing protein | - |
| ECSE_RS25140 () | 18205..19386 | + | 1182 | WP_000729190.1 | hypothetical protein | - |
| ECSE_RS25145 () | 19383..21611 | + | 2229 | WP_000575188.1 | ThiF family adenylyltransferase | - |
| ECSE_RS25150 () | 21656..21784 | - | 129 | Protein_21 | protein ImpB | - |
| ECSE_RS25155 () | 21784..22221 | - | 438 | WP_000109080.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| ECSE_RS25160 () | 22218..22466 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| ECSE_RS25165 () | 22884..23786 | + | 903 | WP_147706527.1 | DUF1281 domain-containing protein | - |
| ECSE_RS27955 () | 23783..24094 | + | 312 | WP_012564976.1 | hypothetical protein | - |
| ECSE_RS25170 () | 24170..24853 | + | 684 | WP_000086160.1 | DNA methylase | - |
| ECSE_RS25175 () | 24854..25075 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| ECSE_RS25180 () | 25089..25523 | + | 435 | WP_000274500.1 | DUF1380 family protein | - |
| ECSE_RS28675 () | 25569..26345 | + | 777 | WP_001005021.1 | hypothetical protein | - |
| ECSE_RS25195 () | 26883..27185 | + | 303 | WP_014653258.1 | antirestriction protein | - |
| ECSE_RS25200 () | 27232..27654 | + | 423 | WP_000271699.1 | DUF1380 family protein | - |
| ECSE_RS25205 () | 27651..27842 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| ECSE_RS28970 () | 27812..28373 | - | 562 | Protein_33 | hypothetical protein | - |
| ECSE_RS25225 () | 28869..29099 | + | 231 | WP_041031395.1 | hypothetical protein | - |
| ECSE_RS25230 () | 29151..30512 | + | 1362 | WP_000170699.1 | DUF3560 domain-containing protein | - |
| ECSE_RS25235 () | 30560..31123 | + | 564 | WP_012564978.1 | class I SAM-dependent methyltransferase | - |
| ECSE_RS27975 () | 31275..31514 | + | 240 | Protein_37 | hypothetical protein | - |
| ECSE_RS25245 () | 31989..32528 | + | 540 | WP_000261477.1 | single-stranded DNA-binding protein | - |
| ECSE_RS25250 () | 32590..32823 | + | 234 | WP_000006017.1 | DUF905 domain-containing protein | - |
| ECSE_RS25255 () | 32889..34853 | + | 1965 | WP_000117101.1 | ParB/RepB/Spo0J family partition protein | - |
| ECSE_RS25260 () | 34922..35356 | + | 435 | WP_000845959.1 | conjugation system SOS inhibitor PsiB | - |
| ECSE_RS25265 () | 35353..36072 | + | 720 | WP_001276247.1 | plasmid SOS inhibition protein A | - |
| ECSE_RS25270 () | 36069..36383 | + | 315 | WP_000872079.1 | hypothetical protein | - |
| - () | 36332..36526 | + | 195 | NuclAT_0 | - | - |
| - () | 36332..36526 | + | 195 | NuclAT_0 | - | - |
| - () | 36332..36526 | + | 195 | NuclAT_0 | - | - |
| - () | 36332..36526 | + | 195 | NuclAT_0 | - | - |
| ECSE_RS25280 () | 36591..36752 | + | 162 | WP_000775238.1 | type I toxin-antitoxin system Hok family toxin | - |
| ECSE_RS28975 () | 36845..37009 | + | 165 | WP_012564983.1 | hypothetical protein | - |
| ECSE_RS29035 () | 37053..37349 | - | 297 | Protein_46 | hypothetical protein | - |
| ECSE_RS25295 () | 37649..37945 | + | 297 | WP_001272238.1 | hypothetical protein | - |
| ECSE_RS25300 () | 38051..38872 | + | 822 | WP_001234420.1 | DUF945 domain-containing protein | - |
| ECSE_RS25305 () | 39151..39603 | - | 453 | WP_001469955.1 | hypothetical protein | VF |
| ECSE_RS25310 () | 40116..40511 | + | 396 | WP_001137964.1 | relaxosome protein TraM | - |
| ECSE_RS25315 () | 40673..41406 | + | 734 | Protein_51 | hypothetical protein | - |
| ECSE_RS25320 () | 41490..41696 | + | 207 | WP_001288097.1 | TraY domain-containing protein | - |
| ECSE_RS25325 () | 41997..42368 | + | 372 | WP_000829448.1 | conjugal transfer protein TraA | - |
| ECSE_RS25330 () | 42387..42686 | + | 300 | WP_000012423.1 | type IV conjugative transfer system protein TraL | - |
| ECSE_RS25335 () | 42701..43279 | + | 579 | WP_000365872.1 | type IV conjugative transfer system protein TraE | - |
| ECSE_RS25340 () | 43254..44033 | + | 780 | WP_000746392.1 | type-F conjugative transfer system secretin TraK | - |
| ECSE_RS25345 () | 44026..45372 | + | 1347 | WP_000024511.1 | conjugal transfer protein TraB | - |
| ECSE_RS25350 () | 45369..45902 | + | 534 | WP_000801207.1 | type IV conjugative transfer system lipoprotein TraV | - |
| ECSE_RS25355 () | 45899..48538 | + | 2640 | WP_000138564.1 | type IV secretion system protein TraC | - |
| ECSE_RS25360 () | 48517..48933 | + | 417 | WP_000361873.1 | type-F conjugative transfer system protein TrbI | - |
| ECSE_RS25365 () | 48936..49160 | + | 225 | WP_000752802.1 | TraR/DksA C4-type zinc finger protein | - |
| ECSE_RS25370 () | 49157..49774 | + | 618 | WP_000871842.1 | type-F conjugative transfer system protein TraW | - |
| ECSE_RS25375 () | 49771..50769 | + | 999 | WP_000619924.1 | conjugal transfer pilus assembly protein TraU | - |
| ECSE_RS25380 () | 50778..51263 | + | 486 | WP_000216831.1 | hypothetical protein | - |
| ECSE_RS28000 () | 51439..51703 | + | 265 | Protein_65 | hypothetical protein | - |
| ECSE_RS25385 () | 51690..51998 | + | 309 | WP_001026252.1 | conjugal transfer protein TrbD | - |
| ECSE_RS25390 () | 52199..52771 | + | 573 | WP_041031396.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| ECSE_RS25395 () | 52768..54702 | + | 1935 | WP_000832269.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| ECSE_RS25400 () | 54704..55489 | + | 786 | WP_000833557.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| ECSE_RS25405 () | 55507..55779 | + | 273 | WP_000196432.1 | hypothetical protein | - |
| ECSE_RS25410 () | 55781..56356 | + | 576 | WP_000265827.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| ECSE_RS25415 () | 56353..56742 | + | 390 | WP_001202474.1 | hypothetical protein | - |
| ECSE_RS25420 () | 56808..58214 | + | 1407 | WP_012564993.1 | conjugal transfer protein TraH | - |
| ECSE_RS25425 () | 58214..61102 | + | 2889 | WP_000063113.1 | conjugal transfer mating pair stabilization protein TraG | - |
| ECSE_RS25430 () | 61116..61766 | + | 651 | WP_000015960.1 | hypothetical protein | - |
| ECSE_RS25435 () | 61838..62575 | + | 738 | WP_000926074.1 | complement resistance protein TraT | - |
| ECSE_RS25440 () | 62705..63397 | + | 693 | WP_000235174.1 | hypothetical protein | - |
| ECSE_RS25445 () | 63404..63907 | + | 504 | WP_000456957.1 | DUF2726 domain-containing protein | - |
| ECSE_RS25450 () | 63948..66134 | + | 2187 | WP_000099427.1 | type IV conjugative transfer system coupling protein TraD | - |
| ECSE_RS25455 () | 66134..71350 | + | 5217 | WP_000948644.1 | Multifunctional conjugation protein TraI | Relaxase |
| ECSE_RS25460 () | 71350..72102 | + | 753 | WP_000431203.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| ECSE_RS25465 () | 72176..72733 | + | 558 | WP_000139378.1 | fertility inhibition protein FinO | - |
| ECSE_RS25470 () | 72873..73085 | + | 213 | WP_012564995.1 | hypothetical protein | - |
| ECSE_RS25475 () | 73469..74068 | + | 600 | WP_000256072.1 | hypothetical protein | - |
| ECSE_RS25480 () | 74237..74467 | + | 231 | WP_041031400.1 | hypothetical protein | - |
| ECSE_RS25485 () | 74781..75041 | + | 261 | WP_000078108.1 | replication regulatory protein RepA | - |
| ECSE_RS25490 () | 75279..75353 | + | 75 | WP_032144212.1 | RepA leader peptide Tap | - |
| ECSE_RS25495 () | 75346..76368 | + | 1023 | WP_000840962.1 | replication initiation protein | - |
| ECSE_RS25500 () | 77277..77546 | + | 270 | WP_000079931.1 | hypothetical protein | - |
| ECSE_RS25505 () | 77543..77823 | + | 281 | Protein_90 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| ECSE_RS28020 () | 77914..78158 | + | 245 | Protein_91 | type IA DNA topoisomerase | - |
| ECSE_RS25515 () | 78269..78562 | + | 294 | WP_000174561.1 | hypothetical protein | - |
| ECSE_RS25525 () | 79283..80305 | - | 1023 | Protein_93 | IS110 family transposase ISSm1 | Transposase |
| ECSE_RS25530 () | 80727..82478 | + | 1752 | WP_000038774.1 | ATP-binding protein | - |
| ECSE_RS25540 () | 82879..83352 | - | 474 | WP_000765122.1 | hypothetical protein | - |
| ECSE_RS25545 () | 83641..86096 | - | 2456 | Protein_96 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| ECSE_RS25550 () | 86257..86655 | + | 399 | WP_000798353.1 | ester cyclase | - |
| ECSE_RS25555 () | 86675..87628 | + | 954 | WP_000716854.1 | helix-turn-helix domain-containing protein | - |
| ECSE_RS25560 () | 87699..88475 | + | 777 | WP_000668513.1 | MBL fold metallo-hydrolase | - |
| ECSE_RS28025 () | 88574..88660 | - | 87 | Protein_100 | integrase | - |
| ECSE_RS25565 () | 88671..88994 | + | 324 | Protein_101 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| ECSE_RS28030 () | 88924..89196 | - | 273 | WP_148195598.1 | P fimbrial regulatory protein KS71A | VF |
| ECSE_RS25570 () | 89666..89989 | + | 324 | WP_000431569.1 | Major pilu subunit operon regulatory protein PapB | VF |
| ECSE_RS25575 () | 89989..90534 | + | 546 | WP_000708866.1 | hypothetical protein | VF |
| ECSE_RS28040 () | 90546..91114 | + | 569 | Protein_105 | outer membrane usher protein PefC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|