MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 83540 bp
Accession: NC_011311 Location: 1..83540 Organism: Aliivibrio salmonicida LFI1238 Replicon: plasmid pVSAL840
Accession: NC_011311 Location: 1..83540 Organism: Aliivibrio salmonicida LFI1238 Replicon: plasmid pVSAL840
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VSAL_RS21720 () | 111..281 | + | 171 | WP_012548839.1 | TraY domain-containing protein | - |
| VSAL_RS21725 () | 426..704 | + | 279 | WP_044583691.1 | type IV conjugative transfer system pilin TraA | - |
| VSAL_RS21730 () | 733..1035 | + | 303 | WP_012548841.1 | type IV conjugative transfer system protein TraL | - |
| VSAL_RS21735 () | 1035..1595 | + | 561 | WP_012548842.1 | type IV conjugative transfer system protein TraE | - |
| VSAL_RS21740 () | 1592..2347 | + | 756 | WP_012548843.1 | type-F conjugative transfer system secretin TraK | - |
| VSAL_RS21745 () | 2337..3767 | + | 1431 | WP_012548844.1 | TraB/VirB10 family protein | - |
| VSAL_RS21750 () | 3780..4181 | + | 402 | WP_012548845.1 | type IV conjugative transfer system lipoprotein TraV | - |
| VSAL_RS21755 () | 4191..6722 | + | 2532 | WP_012548846.1 | type IV secretion system protein TraC | - |
| VSAL_RS21760 () | 6719..7066 | + | 348 | WP_012548847.1 | type-F conjugative transfer system protein TrbI | - |
| VSAL_RS21765 () | 7063..7719 | + | 657 | WP_012548848.1 | type-F conjugative transfer system protein TraW | - |
| VSAL_RS21770 () | 7732..8736 | + | 1005 | WP_012548849.1 | conjugal transfer pilus assembly protein TraU | - |
| VSAL_RS23485 () | 8757..9122 | + | 366 | WP_044583682.1 | hypothetical protein | - |
| VSAL_RS21780 () | 9119..9817 | + | 699 | WP_044583683.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| VSAL_RS21785 () | 9821..11539 | + | 1719 | WP_012548851.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| VSAL_RS21790 () | 11549..12292 | + | 744 | WP_012548852.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| VSAL_RS21795 () | 12330..13049 | + | 720 | WP_044583684.1 | hypothetical protein | - |
| VSAL_RS21800 () | 13119..13544 | + | 426 | WP_012548854.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| VSAL_RS21805 () | 13541..14926 | + | 1386 | WP_012548855.1 | conjugal transfer protein TraH | - |
| VSAL_RS21810 () | 14923..17718 | + | 2796 | WP_012548856.1 | conjugal transfer mating pair stabilization protein TraG | - |
| VSAL_RS21815 () | 17817..18314 | + | 498 | WP_012548857.1 | hypothetical protein | - |
| VSAL_RS21820 () | 18326..20404 | + | 2079 | WP_012548858.1 | type IV conjugative transfer system coupling protein TraD | - |
| VSAL_RS21825 () | 20545..26355 | + | 5811 | WP_012548859.1 | conjugative transfer relaxase/helicase TraI | - |
| VSAL_RS21830 () | 26399..26752 | - | 354 | WP_012548860.1 | hypothetical protein | - |
| VSAL_RS21835 () | 27390..27827 | - | 438 | WP_012548861.1 | lytic transglycosylase domain-containing protein | - |
| VSAL_RS21840 () | 27861..28256 | - | 396 | WP_012548862.1 | hypothetical protein | - |
| VSAL_RS21845 () | 28293..29294 | - | 1002 | WP_012548863.1 | DUF1738 domain-containing protein | - |
| VSAL_RS23600 () | 29539..29730 | + | 192 | WP_158306899.1 | hypothetical protein | - |
| VSAL_RS21850 () | 30133..30489 | - | 357 | WP_012548864.1 | hypothetical protein | - |
| VSAL_RS21855 () | 30649..31068 | - | 420 | WP_012548865.1 | hypothetical protein | - |
| VSAL_RS21860 () | 31361..31636 | + | 276 | WP_012548866.1 | HU family DNA-binding protein | - |
| VSAL_RS21865 () | 31792..32052 | - | 261 | WP_012548867.1 | hypothetical protein | - |
| VSAL_RS21870 () | 32178..32468 | - | 291 | WP_012548868.1 | hypothetical protein | - |
| VSAL_RS21875 () | 32491..32940 | - | 450 | WP_012548869.1 | hypothetical protein | - |
| VSAL_RS21880 () | 32930..33313 | - | 384 | WP_012548870.1 | hypothetical protein | - |
| VSAL_RS21885 () | 33384..33830 | - | 447 | WP_158306900.1 | DNA repair protein RadC | - |
| VSAL_RS23490 () | 33897..34280 | - | 384 | WP_049940477.1 | hypothetical protein | - |
| VSAL_RS23120 () | 35016..35165 | + | 150 | WP_083799329.1 | Hok/Gef family protein | - |
| VSAL_RS21895 () | 35695..36213 | + | 519 | WP_012548873.1 | Hcp family type VI secretion system effector | - |
| VSAL_RS21900 () | 36284..38548 | + | 2265 | WP_012548874.1 | type VI secretion system tip protein VgrG | - |
| VSAL_RS21905 () | 38530..39123 | + | 594 | WP_012548875.1 | DUF4123 domain-containing protein | - |
| VSAL_RS21910 () | 39139..41583 | + | 2445 | WP_012548876.1 | LysM peptidoglycan-binding domain-containing protein | - |
| VSAL_RS21915 () | 41661..42728 | - | 1068 | WP_012548877.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | - |
| VSAL_RS21920 () | 43036..44232 | + | 1197 | WP_012548878.1 | ParA family protein | - |
| VSAL_RS22510 () | 44232..45239 | + | 1008 | WP_012548879.1 | ParB/RepB/Spo0J family partition protein | - |
| VSAL_RS21930 () | 45392..45667 | - | 276 | WP_044583686.1 | hypothetical protein | - |
| VSAL_RS21935 () | 45731..46276 | - | 546 | WP_012548880.1 | recombinase family protein | - |
| VSAL_RS21940 () | 46692..46892 | - | 201 | WP_044583687.1 | hypothetical protein | - |
| VSAL_RS21945 () | 46932..47567 | - | 636 | WP_012548882.1 | recombinase family protein | - |
| VSAL_RS21950 () | 47865..49046 | - | 1182 | WP_012548883.1 | IS91-like element ISVsa21 family transposase | - |
| VSAL_RS23125 () | 49322..51541 | + | 2220 | WP_012548884.1 | LysM peptidoglycan-binding domain-containing protein | - |
| VSAL_RS21960 () | 51649..51930 | + | 282 | WP_044583358.1 | hypothetical protein | - |
| VSAL_RS21965 () | 52192..52560 | - | 369 | WP_012548886.1 | hypothetical protein | - |
| VSAL_RS21970 () | 53205..54152 | + | 948 | WP_049940478.1 | Abi family protein | - |
| VSAL_RS21975 () | 54700..55974 | + | 1275 | WP_012548888.1 | nucleotidyltransferase | - |
| VSAL_RS21980 () | 56054..56626 | + | 573 | WP_012548889.1 | SLATT domain-containing protein | - |
| VSAL_RS21985 () | 57061..57801 | - | 741 | WP_012548890.1 | IS6-like element ISVsa4 family transposase | - |
| VSAL_RS21990 () | 57825..58238 | + | 414 | WP_148234228.1 | hypothetical protein | - |
| VSAL_RS21995 () | 58377..58655 | - | 279 | WP_012548891.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| VSAL_RS22000 () | 58652..58936 | - | 285 | WP_012548892.1 | DNA-damage-inducible protein J | Antitoxin Detail |
| VSAL_RS22005 () | 59510..61699 | + | 2190 | WP_012548893.1 | glycoside hydrolase family 3 protein | - |
| VSAL_RS22010 () | 62129..64735 | + | 2607 | WP_012548894.1 | hypothetical protein | - |
| VSAL_RS22015 () | 64735..67281 | + | 2547 | WP_012548895.1 | hypothetical protein | - |
| VSAL_RS22020 () | 67397..69208 | - | 1812 | WP_012548896.1 | hypothetical protein | - |
| VSAL_RS22025 () | 69201..70049 | - | 849 | WP_012548897.1 | hypothetical protein | - |
| VSAL_RS22030 () | 70039..71070 | - | 1032 | WP_012548898.1 | 50S ribosome-binding GTPase | - |
| VSAL_RS22035 () | 71071..71598 | - | 528 | WP_044583689.1 | hypothetical protein | - |
| VSAL_RS22040 () | 71703..72668 | - | 966 | WP_012548900.1 | IS30 family transposase | - |
| VSAL_RS22045 () | 72757..73302 | - | 546 | WP_012548901.1 | hypothetical protein | - |
| VSAL_RS22050 () | 73303..74616 | - | 1314 | WP_012548902.1 | metallophosphoesterase family protein | - |
| VSAL_RS22055 () | 74928..76940 | - | 2013 | WP_012548903.1 | hypothetical protein | - |
| VSAL_RS22060 () | 77075..77350 | - | 276 | WP_012548904.1 | HU family DNA-binding protein | - |
| VSAL_RS22065 () | 77364..77960 | - | 597 | WP_012548905.1 | DUF2913 family protein | - |
| VSAL_RS23605 () | 78309..78473 | + | 165 | WP_158306901.1 | hypothetical protein | - |
| VSAL_RS22070 () | 78757..79584 | - | 828 | WP_044583690.1 | hypothetical protein | - |
| VSAL_RS22075 () | 80289..80525 | + | 237 | WP_012548907.1 | hypothetical protein | - |
| VSAL_RS22080 () | 80554..81303 | - | 750 | WP_012548908.1 | SDR family oxidoreductase | - |
| VSAL_RS22085 () | 81300..82178 | - | 879 | WP_158306902.1 | hypothetical protein | - |
| VSAL_RS22090 () | 82244..83374 | - | 1131 | WP_012548910.1 | membrane protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|