MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 158821 bp
Accession: NC_011206 Location: 1234011..1392831 Organism: Acidithiobacillus ferrooxidans ATCC 53993 Replicon: chromosome
Accession: NC_011206 Location: 1234011..1392831 Organism: Acidithiobacillus ferrooxidans ATCC 53993 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LFERR_RS06325 () | 1229969..1232350 | + | 2382 | WP_012536600.1 | sucrose synthase | - |
| LFERR_RS06330 () | 1232495..1233019 | - | 525 | WP_012536601.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| LFERR_RS06335 () | 1233172..1233825 | - | 654 | WP_012536602.1 | DUF202 domain-containing protein | - |
| LFERR_RS06345 () | 1234079..1235074 | - | 996 | WP_012536603.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LFERR_RS06350 () | 1235219..1235473 | - | 255 | WP_012536604.1 | hypothetical protein | - |
| LFERR_RS06355 () | 1235670..1235897 | - | 228 | WP_012536605.1 | hypothetical protein | - |
| LFERR_RS14470 () | 1236172..1236630 | - | 459 | WP_012536606.1 | helix-turn-helix domain-containing protein | - |
| LFERR_RS14475 () | 1236654..1236944 | + | 291 | WP_155115418.1 | hypothetical protein | - |
| LFERR_RS06370 () | 1237052..1238113 | + | 1062 | WP_012535813.1 | DUF1376 domain-containing protein | - |
| LFERR_RS06375 () | 1238124..1238978 | + | 855 | WP_012536608.1 | ATP-binding protein | - |
| LFERR_RS06380 () | 1238975..1240171 | + | 1197 | WP_012536609.1 | hypothetical protein | - |
| LFERR_RS06385 () | 1240168..1241058 | + | 891 | WP_012535816.1 | DNA adenine methylase | - |
| LFERR_RS06390 () | 1241108..1241602 | + | 495 | WP_012536610.1 | single-stranded DNA-binding protein | - |
| LFERR_RS15285 () | 1242618..1243787 | + | 1170 | WP_012536611.1 | hypothetical protein | - |
| LFERR_RS06395 () | 1244081..1244734 | - | 654 | WP_012536612.1 | hypothetical protein | - |
| LFERR_RS06400 () | 1245108..1249250 | - | 4143 | WP_196219042.1 | hypothetical protein | - |
| LFERR_RS06405 () | 1249566..1250759 | - | 1194 | WP_012536614.1 | GIY-YIG nuclease family protein | - |
| LFERR_RS06410 () | 1250752..1252863 | - | 2112 | WP_012536615.1 | DEAD/DEAH box helicase | - |
| LFERR_RS06415 () | 1253013..1253710 | - | 698 | Protein_1274 | putative DNA binding domain-containing protein | - |
| LFERR_RS06420 () | 1253707..1256505 | - | 2799 | WP_012536617.1 | class I SAM-dependent DNA methyltransferase | - |
| LFERR_RS15290 () | 1256623..1256766 | - | 144 | Protein_1276 | SAM-dependent DNA methyltransferase | - |
| LFERR_RS06430 () | 1256907..1257281 | - | 375 | WP_012536619.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LFERR_RS14885 () | 1257278..1257475 | - | 198 | WP_012536620.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LFERR_RS15295 () | 1257821..1257982 | - | 162 | WP_012536621.1 | hypothetical protein | - |
| LFERR_RS06435 () | 1258332..1259006 | + | 675 | WP_012536622.1 | hypothetical protein | - |
| LFERR_RS06440 () | 1259003..1259326 | + | 324 | WP_012536623.1 | integration host factor subunit alpha | - |
| LFERR_RS06445 () | 1259393..1259668 | + | 276 | WP_012536624.1 | HU family DNA-binding protein | - |
| LFERR_RS06450 () | 1259680..1260033 | + | 354 | WP_009560827.1 | hypothetical protein | - |
| LFERR_RS14890 () | 1260042..1260263 | + | 222 | WP_009560828.1 | HU family DNA-binding protein | - |
| LFERR_RS06455 () | 1260866..1261000 | - | 135 | Protein_1285 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | - |
| LFERR_RS06460 () | 1260987..1261256 | - | 270 | WP_012536625.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| LFERR_RS06465 () | 1261281..1262177 | - | 897 | WP_012536626.1 | hypothetical protein | - |
| LFERR_RS06470 () | 1262439..1262930 | + | 492 | WP_012536627.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| LFERR_RS06475 () | 1263000..1263542 | + | 543 | WP_041838684.1 | hypothetical protein | - |
| LFERR_RS06480 () | 1263535..1264503 | + | 969 | WP_012536629.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| LFERR_RS06485 () | 1264639..1269012 | + | 4374 | WP_012536630.1 | DUF3560 domain-containing protein | - |
| LFERR_RS06490 () | 1269073..1270257 | + | 1185 | WP_012536631.1 | hypothetical protein | - |
| LFERR_RS06495 () | 1270254..1270532 | + | 279 | WP_012536632.1 | hypothetical protein | - |
| LFERR_RS14895 () | 1270674..1270999 | - | 326 | Protein_1294 | recombinase family protein | - |
| LFERR_RS15300 () | 1271835..1272344 | + | 510 | WP_012536633.1 | hypothetical protein | - |
| LFERR_RS15305 () | 1272816..1273517 | + | 702 | WP_012536634.1 | hypothetical protein | - |
| LFERR_RS15310 () | 1273880..1274329 | - | 450 | WP_088775928.1 | hypothetical protein | - |
| LFERR_RS15315 () | 1274976..1275146 | - | 171 | Protein_1298 | IS110 family transposase ISAfe1 | Transposase |
| LFERR_RS06510 () | 1275394..1275819 | - | 426 | WP_012536637.1 | hypothetical protein | - |
| LFERR_RS06515 () | 1276057..1276440 | - | 384 | WP_146235839.1 | hypothetical protein | - |
| LFERR_RS06520 () | 1276745..1276987 | - | 243 | WP_012536639.1 | BrnA antitoxin family protein | - |
| LFERR_RS06525 () | 1276984..1277265 | - | 282 | WP_012536640.1 | BrnT family toxin | - |
| LFERR_RS06530 () | 1277404..1277676 | - | 273 | WP_012536641.1 | hypothetical protein | - |
| LFERR_RS15320 () | 1277741..1277914 | - | 174 | WP_012536642.1 | hypothetical protein | - |
| LFERR_RS06535 () | 1278143..1278766 | + | 624 | Protein_1305 | hypothetical protein | - |
| LFERR_RS06540 () | 1278831..1279646 | + | 816 | WP_012536644.1 | hypothetical protein | - |
| LFERR_RS06545 () | 1279646..1281196 | + | 1551 | WP_012536645.1 | DUF3363 domain-containing protein | - |
| LFERR_RS15325 () | 1281213..1281374 | + | 162 | WP_012536646.1 | hypothetical protein | - |
| LFERR_RS06555 () | 1282428..1283072 | + | 645 | WP_111122567.1 | hypothetical protein | - |
| LFERR_RS15610 () | 1283489..1283683 | - | 195 | WP_012536648.1 | hypothetical protein | - |
| LFERR_RS06565 () | 1283728..1285365 | - | 1638 | WP_012536649.1 | IS66 family transposase ISAfe4 | Transposase |
| LFERR_RS06570 () | 1285415..1285762 | - | 348 | WP_012536650.1 | IS66 family transposase ISAfe4 | Transposase |
| LFERR_RS06575 () | 1285753..1286085 | - | 333 | WP_012536651.1 | IS66 family transposase ISAfe4 | Transposase |
| LFERR_RS15340 () | 1286193..1286336 | + | 144 | WP_012536652.1 | hypothetical protein | - |
| LFERR_RS06580 () | 1286713..1286914 | + | 202 | Protein_1315 | addiction module killer protein | - |
| LFERR_RS06585 () | 1286918..1287217 | + | 300 | WP_012536655.1 | putative addiction module antidote protein | - |
| LFERR_RS06590 () | 1287326..1287631 | + | 306 | WP_146235838.1 | hypothetical protein | - |
| LFERR_RS06595 () | 1287784..1288236 | + | 453 | WP_012536656.1 | hypothetical protein | - |
| LFERR_RS06600 () | 1288233..1289201 | + | 969 | WP_012536657.1 | hypothetical protein | VF |
| LFERR_RS06610 () | 1289598..1290389 | - | 792 | WP_012536659.1 | hypothetical protein | - |
| LFERR_RS06615 () | 1290594..1290980 | + | 387 | WP_012536660.1 | TrbC/VirB2 family protein | - |
| LFERR_RS06620 () | 1290984..1291361 | + | 378 | WP_012536661.1 | VirB3 family type IV secretion system protein | - |
| LFERR_RS06625 () | 1291361..1293883 | + | 2523 | WP_012535917.1 | conjugal transfer protein TrbE | - |
| LFERR_RS06630 () | 1293880..1294134 | + | 255 | WP_012536662.1 | hypothetical protein | - |
| LFERR_RS06635 () | 1294217..1294957 | + | 741 | WP_012536663.1 | P-type conjugative transfer protein TrbJ | - |
| LFERR_RS06640 () | 1294969..1295223 | + | 255 | WP_012536664.1 | EexN family lipoprotein | - |
| LFERR_RS06645 () | 1295239..1297008 | + | 1770 | WP_012536665.1 | P-type conjugative transfer protein TrbL | - |
| LFERR_RS06650 () | 1297001..1297474 | + | 474 | WP_088775929.1 | hypothetical protein | - |
| LFERR_RS06655 () | 1297648..1298115 | - | 468 | WP_012536667.1 | phosphate-starvation-inducible PsiE family protein | - |
| LFERR_RS06660 () | 1298504..1299988 | - | 1485 | WP_012536668.1 | hypothetical protein | VF |
| LFERR_RS06665 () | 1300488..1300934 | - | 447 | WP_009569199.1 | hypothetical protein | VF |
| LFERR_RS06670 () | 1301269..1302024 | - | 756 | WP_049756717.1 | hypothetical protein ; Integrase | Integrase |
| LFERR_RS06675 () | 1302212..1303093 | + | 882 | WP_012536669.1 | NAD(P)-dependent oxidoreductase | - |
| LFERR_RS06680 () | 1303123..1305390 | + | 2268 | WP_012536670.1 | FdhF/YdeP family oxidoreductase | - |
| LFERR_RS06685 () | 1305380..1305649 | + | 270 | WP_009569193.1 | hypothetical protein | - |
| LFERR_RS06690 () | 1305628..1306476 | + | 849 | WP_009569191.1 | formate dehydrogenase accessory sulfurtransferase FdhD | - |
| LFERR_RS06695 () | 1306485..1307270 | - | 786 | Protein_1337 | IS630 family transposase ISPa47 | Transposase |
| LFERR_RS06700 () | 1307435..1308463 | - | 1029 | WP_041838742.1 | 2Fe-2S iron-sulfur cluster binding domain-containing protein | - |
| LFERR_RS06705 () | 1308522..1310192 | - | 1671 | WP_009566369.1 | hydroxylamine reductase | - |
| LFERR_RS06710 () | 1310566..1311234 | + | 669 | WP_012536674.1 | Crp/Fnr family transcriptional regulator | - |
| LFERR_RS06715 () | 1311500..1312528 | - | 1029 | WP_012536675.1 | hypothetical protein | - |
| LFERR_RS06720 () | 1312655..1315132 | - | 2478 | WP_012536676.1 | DUF2309 domain-containing protein | - |
| LFERR_RS06725 () | 1315135..1316775 | - | 1641 | WP_012536677.1 | NADH dehydrogenase | - |
| LFERR_RS06730 () | 1317080..1318330 | - | 1251 | WP_012536678.1 | glycolate oxidase subunit GlcF | - |
| LFERR_RS06735 () | 1318340..1319452 | - | 1113 | WP_012536679.1 | glycolate oxidase subunit GlcE | - |
| LFERR_RS06740 () | 1319406..1320872 | - | 1467 | WP_012536680.1 | FAD-binding protein | - |
| LFERR_RS06745 () | 1320887..1322224 | - | 1338 | WP_012536681.1 | hypothetical protein | - |
| LFERR_RS06750 () | 1322237..1324456 | - | 2220 | WP_012536682.1 | transketolase | - |
| LFERR_RS06755 () | 1324554..1325333 | + | 780 | WP_012536683.1 | IclR family transcriptional regulator | - |
| LFERR_RS06760 () | 1325633..1325902 | + | 270 | WP_012536684.1 | hypothetical protein | - |
| LFERR_RS06765 () | 1325969..1326847 | + | 879 | WP_012536685.1 | hypothetical protein | - |
| LFERR_RS06770 () | 1326903..1327463 | + | 561 | WP_012536686.1 | hypothetical protein | - |
| LFERR_RS06775 () | 1327531..1328568 | + | 1038 | WP_012536687.1 | dihydroorotase | - |
| LFERR_RS06780 () | 1328650..1330323 | + | 1674 | WP_012536688.1 | dihydroxy-acid dehydratase | - |
| LFERR_RS06785 () | 1330327..1331313 | - | 987 | WP_012536689.1 | threonylcarbamoyl-AMP synthase | - |
| LFERR_RS06795 () | 1331508..1332296 | - | 789 | WP_012536691.1 | dethiobiotin synthase | - |
| LFERR_RS06800 () | 1332293..1333474 | - | 1182 | WP_012536692.1 | class II fructose-bisphosphate aldolase | - |
| LFERR_RS06805 () | 1333600..1335951 | - | 2352 | WP_012536693.1 | VWA domain-containing protein | - |
| LFERR_RS06810 () | 1335967..1336770 | - | 804 | WP_012536694.1 | CbbQ/NirQ/NorQ/GpvN family protein | - |
| LFERR_RS06815 () | 1337046..1337681 | - | 636 | WP_012536696.1 | AAA family ATPase | - |
| LFERR_RS06820 () | 1337718..1337996 | - | 279 | WP_012536697.1 | hypothetical protein | - |
| LFERR_RS06825 () | 1337993..1338436 | - | 444 | WP_012607171.1 | bacterioferritin | - |
| LFERR_RS06830 () | 1338450..1338788 | - | 339 | WP_012536698.1 | BMC domain-containing protein | - |
| LFERR_RS06835 () | 1338834..1339130 | - | 297 | WP_012536699.1 | BMC domain-containing protein | - |
| LFERR_RS06840 () | 1339175..1339471 | - | 297 | WP_012536700.1 | BMC domain-containing protein | - |
| LFERR_RS06845 () | 1339503..1339769 | - | 267 | WP_009567525.1 | carboxysome peptide B | - |
| LFERR_RS06850 () | 1339780..1340028 | - | 249 | WP_009567526.1 | carboxysome peptide A | - |
| LFERR_RS06855 () | 1340025..1341626 | - | 1602 | WP_012536701.1 | carboxysome shell carbonic anhydrase | - |
| LFERR_RS06860 () | 1341682..1343970 | - | 2289 | WP_111122563.1 | CsoS2 family carboxysome shell protein | - |
| LFERR_RS06865 () | 1344053..1344385 | - | 333 | WP_012536703.1 | ribulose bisphosphate carboxylase small subunit | - |
| LFERR_RS06870 () | 1344477..1345898 | - | 1422 | WP_012536704.1 | form I ribulose bisphosphate carboxylase large subunit | - |
| LFERR_RS06875 () | 1345971..1346969 | + | 999 | WP_080515400.1 | LysR family transcriptional regulator | - |
| LFERR_RS06880 () | 1347413..1348270 | + | 858 | WP_009564689.1 | DUF2236 domain-containing protein | - |
| LFERR_RS06885 () | 1348580..1349248 | + | 669 | WP_009564688.1 | type IV secretion system protein | - |
| LFERR_RS06890 () | 1349261..1350376 | + | 1116 | WP_012536706.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LFERR_RS06895 () | 1350378..1351394 | + | 1017 | WP_012536707.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LFERR_RS06900 () | 1351397..1352857 | + | 1461 | WP_012536708.1 | hypothetical protein | VF |
| LFERR_RS06905 () | 1352868..1353170 | + | 303 | WP_012536709.1 | hypothetical protein | - |
| LFERR_RS06910 () | 1353167..1353823 | + | 657 | WP_012536710.1 | hypothetical protein | VF |
| LFERR_RS06915 () | 1353834..1356320 | + | 2487 | WP_012536711.1 | hypothetical protein | VF |
| LFERR_RS06920 () | 1356430..1356624 | + | 195 | WP_009569339.1 | hypothetical protein | - |
| LFERR_RS06925 () | 1356626..1356921 | + | 296 | Protein_1382 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LFERR_RS14490 () | 1358483..1360978 | + | 2496 | WP_049756718.1 | diguanylate cyclase | - |
| LFERR_RS06950 () | 1360962..1361921 | + | 960 | WP_041838687.1 | hypothetical protein | VF |
| LFERR_RS06955 () | 1362059..1362769 | - | 711 | WP_009566825.1 | PilZ domain-containing protein | - |
| LFERR_RS06960 () | 1362940..1365579 | - | 2640 | WP_012536716.1 | hypothetical protein | VF |
| LFERR_RS06965 () | 1366004..1366192 | - | 189 | WP_009562011.1 | hypothetical protein | - |
| LFERR_RS06975 () | 1366430..1367329 | - | 900 | WP_009562016.1 | GTP-binding protein | - |
| LFERR_RS06980 () | 1367341..1367655 | - | 315 | WP_041838688.1 | hypothetical protein | - |
| LFERR_RS06985 () | 1367657..1367914 | - | 258 | WP_012536718.1 | hypothetical protein | - |
| LFERR_RS06990 () | 1367998..1369236 | - | 1239 | WP_012536719.1 | ParB/RepB/Spo0J family partition protein | - |
| LFERR_RS06995 () | 1369238..1370008 | - | 771 | WP_012536720.1 | ParA family protein | - |
| LFERR_RS07000 () | 1369987..1370427 | - | 441 | WP_009563488.1 | hypothetical protein | - |
| LFERR_RS07005 () | 1370557..1370925 | + | 369 | WP_009563487.1 | cytochrome P460 family protein | - |
| LFERR_RS07010 () | 1370936..1371934 | - | 999 | WP_012536721.1 | aldo/keto reductase | - |
| LFERR_RS07015 () | 1373197..1375326 | + | 2130 | WP_041838745.1 | hypothetical protein | VF |
| LFERR_RS07020 () | 1375453..1375998 | - | 546 | WP_012536723.1 | S26 family signal peptidase | - |
| LFERR_RS07025 () | 1376114..1376410 | + | 297 | WP_041838746.1 | hypothetical protein | - |
| LFERR_RS07030 () | 1376391..1376732 | + | 342 | WP_012536725.1 | transcriptional regulator | - |
| LFERR_RS14910 () | 1376740..1376952 | - | 213 | WP_012536726.1 | hypothetical protein | - |
| LFERR_RS07035 () | 1376915..1377178 | - | 264 | WP_111122609.1 | hypothetical protein | - |
| LFERR_RS07040 () | 1377257..1378567 | - | 1311 | WP_012536728.1 | conjugal transfer protein TraB | - |
| LFERR_RS07045 () | 1378844..1379056 | + | 213 | WP_012536729.1 | hypothetical protein | - |
| LFERR_RS07050 () | 1379068..1379511 | + | 444 | WP_009567290.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| LFERR_RS07055 () | 1379617..1379913 | + | 297 | WP_012536730.1 | putative addiction module antidote protein | - |
| LFERR_RS07060 () | 1380612..1382663 | - | 2052 | WP_012536731.1 | DNA topoisomerase 3 | - |
| LFERR_RS14495 () | 1384274..1384912 | + | 639 | WP_012536732.1 | HNH endonuclease | - |
| LFERR_RS14915 () | 1385042..1385458 | + | 417 | WP_012536733.1 | GFA family protein | - |
| LFERR_RS07085 () | 1385570..1386853 | + | 1284 | WP_012536734.1 | hypothetical protein | - |
| LFERR_RS14920 () | 1387326..1387910 | + | 585 | WP_012536735.1 | carbonic anhydrase | - |
| LFERR_RS07090 () | 1388245..1389369 | + | 1125 | WP_012536736.1 | DNA polymerase IV | - |
| LFERR_RS15350 () | 1389500..1389856 | - | 357 | WP_151528139.1 | hypothetical protein | - |
| LFERR_RS07100 () | 1390424..1391761 | - | 1338 | WP_012536737.1 | cardiolipin synthase B | - |
| LFERR_RS15615 () | 1391892..1392065 | + | 174 | WP_012536738.1 | hypothetical protein | - |
| LFERR_RS07110 () | 1392052..1392582 | + | 531 | WP_012536739.1 | hypothetical protein | - |
| LFERR_RS07115 () | 1393083..1395695 | - | 2613 | WP_012536740.1 | DNA mismatch repair protein MutS | - |
| LFERR_RS07120 () | 1395720..1395956 | - | 237 | WP_009563481.1 | YdcH family protein | - |
| LFERR_RS07125 () | 1396076..1396264 | + | 189 | WP_041646061.1 | DUF520 family protein | - |
| LFERR_RS07130 () | 1396280..1397524 | + | 1245 | WP_009563479.1 | glycosyltransferase family 4 protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|