MGE detailed information
MGE type: Prophage MGE length: 141980 bp
Accession: NC_010658 Location: 805443..947422 Organism: Shigella boydii CDC 3083-94 Replicon: chromosome
Accession: NC_010658 Location: 805443..947422 Organism: Shigella boydii CDC 3083-94 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SBBS512_RS06040 () | 800643..801185 | - | 543 | WP_000682832.1 | fimbrial protein | - |
| SBBS512_RS06050 () | 801484..801765 | - | 282 | WP_001403727.1 | DUF2574 family protein | - |
| SBBS512_RS06055 () | 802028..803137 | - | 1110 | WP_001005448.1 | iron-sulfur cluster carrier protein ApbC | - |
| SBBS512_RS06060 () | 803269..805302 | + | 2034 | WP_012421487.1 | methionine--tRNA ligase | - |
| SBBS512_RS06065 () | 805443..806009 | + | 567 | Protein_777 | WGR domain-containing protein | - |
| SBBS512_RS28390 () | 806052..806414 | - | 363 | Protein_778 | IS3 family transposase IS600 | Transposase |
| SBBS512_RS06080 () | 806503..807731 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| SBBS512_RS31235 () | 807742..808544 | - | 803 | Protein_780 | IS3 family transposase ISSd1 | Transposase |
| SBBS512_RS31245 () | 808668..809365 | + | 698 | Protein_781 | IS1 family transposase IS1R | Transposase |
| SBBS512_RS27365 () | 809383..809655 | + | 273 | Protein_782 | DUF1307 domain-containing protein | - |
| SBBS512_RS06100 () | 809696..810166 | - | 471 | WP_001295430.1 | DUF1456 family protein | - |
| SBBS512_RS06105 () | 810213..810932 | - | 720 | WP_000598643.1 | Transcriptional regulatory protein BtsR | VF |
| SBBS512_RS06110 () | 810929..812614 | - | 1686 | WP_012421574.1 | Sensor histidine kinase BtsS | VF |
| SBBS512_RS32885 () | 812836..812901 | + | 66 | Protein_786 | MerR family DNA-binding transcriptional regulator | - |
| SBBS512_RS31250 () | 813140..813837 | - | 698 | Protein_787 | IS1 family transposase IS1R | Transposase |
| SBBS512_RS06125 () | 813906..814154 | + | 249 | WP_001261938.1 | DinI-like family protein | - |
| SBBS512_RS28400 () | 814258..814386 | - | 129 | Protein_789 | helix-turn-helix domain-containing protein | - |
| SBBS512_RS06130 () | 814471..815016 | + | 546 | WP_001026780.1 | serine acetyltransferase | - |
| SBBS512_RS06135 () | 815027..815599 | - | 573 | WP_012421569.1 | tail fiber assembly protein | - |
| SBBS512_RS06140 () | 815599..816786 | - | 1188 | WP_024258569.1 | phage tail protein | - |
| SBBS512_RS31260 () | 816966..817663 | + | 698 | Protein_793 | IS1 family transposase IS1R | Transposase |
| SBBS512_RS06155 () | 817678..819546 | - | 1869 | Protein_794 | prophage tail fiber N-terminal domain-containing protein | - |
| SBBS512_RS06160 () | 819698..820297 | - | 600 | WP_001228313.1 | Outer membrane protein X | VF |
| SBBS512_RS06165 () | 820365..823838 | - | 3474 | WP_000514745.1 | host specificity protein J | - |
| SBBS512_RS06170 () | 824180..824851 | - | 672 | WP_094096751.1 | tail assembly protein | - |
| SBBS512_RS06175 () | 824805..825410 | - | 606 | Protein_798 | phage tail protein | - |
| SBBS512_RS06180 () | 825421..826119 | - | 699 | WP_012421295.1 | phage minor tail protein L | - |
| SBBS512_RS06185 () | 826119..826448 | - | 330 | WP_000847315.1 | phage tail protein | - |
| SBBS512_RS06190 () | 826445..829057 | - | 2613 | WP_000081774.1 | phage tail tape measure protein | - |
| SBBS512_RS06195 () | 829038..829451 | - | 414 | WP_000533443.1 | phage tail assembly protein T | - |
| SBBS512_RS06200 () | 829474..829869 | - | 396 | Protein_803 | phage minor tail protein G | - |
| SBBS512_RS06205 () | 829883..830635 | - | 753 | WP_000235103.1 | phage tail protein | - |
| SBBS512_RS06210 () | 830643..831038 | - | 396 | WP_000683079.1 | phage minor tail U family protein | - |
| SBBS512_RS06215 () | 831035..831610 | - | 576 | WP_000975010.1 | phage tail protein | - |
| SBBS512_RS06220 () | 831626..831979 | - | 354 | WP_001204570.1 | tail attachment protein | - |
| SBBS512_RS06225 () | 831972..832355 | - | 384 | WP_000201502.1 | hypothetical protein | - |
| SBBS512_RS06230 () | 832407..833435 | - | 1029 | WP_000522594.1 | major capsid protein | - |
| SBBS512_RS06235 () | 833493..833840 | - | 348 | WP_000256820.1 | head decoration protein | - |
| SBBS512_RS06240 () | 833877..835382 | - | 1506 | WP_001254021.1 | S49 family peptidase | - |
| SBBS512_RS06245 () | 835372..836154 | - | 783 | Protein_812 | phage portal protein | - |
| SBBS512_RS06250 () | 836948..837229 | - | 282 | WP_000140265.1 | hypothetical protein | - |
| SBBS512_RS32895 () | 838930..839089 | + | 160 | Protein_815 | transposase domain-containing protein | - |
| SBBS512_RS06270 () | 839307..841397 | - | 2091 | WP_001223356.1 | bifunctional siderophore receptor/adhesin Iha | - |
| SBBS512_RS06285 () | 841853..843081 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| SBBS512_RS06305 () | 845116..845385 | + | 270 | WP_001289722.1 | DUF826 domain-containing protein | - |
| SBBS512_RS06310 () | 845589..846008 | + | 420 | WP_000435414.1 | IS66 family transposase IS682 | Transposase |
| SBBS512_RS06315 () | 846005..846355 | + | 351 | WP_000623347.1 | IS66 family transposase IS682 | Transposase |
| SBBS512_RS06320 () | 846386..847978 | + | 1593 | WP_001072381.1 | IS66 family transposase ISEc43 | Transposase |
| SBBS512_RS28425 () | 848026..848169 | + | 144 | WP_039059163.1 | lysis protein | - |
| SBBS512_RS06325 () | 848144..849090 | - | 947 | Protein_824 | IS3 family transposase ISLad1 | Transposase |
| SBBS512_RS06335 () | 849146..849843 | + | 698 | Protein_825 | IS1 family transposase IS1X2 | Transposase |
| SBBS512_RS06340 () | 850027..850677 | - | 651 | WP_001007759.1 | metal-binding protein ZinT | - |
| SBBS512_RS06345 () | 850934..851569 | - | 636 | WP_001240105.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| SBBS512_RS06350 () | 851570..852574 | - | 1005 | WP_000740100.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| SBBS512_RS06355 () | 852683..853096 | - | 414 | WP_000920122.1 | hydroxyisourate hydrolase | - |
| SBBS512_RS06360 () | 853229..853900 | + | 672 | WP_001339045.1 | Transcriptional regulatory protein HprR | VF |
| SBBS512_RS06365 () | 853900..855258 | + | 1359 | WP_000826763.1 | two-component system sensor histidine kinase HprS | - |
| SBBS512_RS06370 () | 855366..856217 | - | 852 | WP_000218214.1 | protein deglycase HchA | - |
| SBBS512_RS06380 () | 856779..857476 | - | 698 | Protein_833 | IS1 family transposase IS1X2 | Transposase |
| SBBS512_RS06385 () | 857586..858083 | - | 498 | WP_000020956.1 | porin | - |
| SBBS512_RS28440 () | 858177..859405 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| SBBS512_RS06400 () | 859420..859995 | - | 576 | Protein_836 | porin | - |
| SBBS512_RS06410 () | 860562..860927 | + | 366 | WP_073692924.1 | permease | - |
| SBBS512_RS06415 () | 860967..861662 | + | 696 | WP_000365568.1 | phosphohydrolase | - |
| SBBS512_RS06420 () | 861729..863147 | + | 1419 | WP_001157236.1 | DNA-cytosine methyltransferase | - |
| SBBS512_RS06425 () | 863128..863598 | + | 471 | WP_000786008.1 | VSPR family DNA mismatch endonuclease | - |
| SBBS512_RS06430 () | 863587..864507 | - | 921 | WP_001212248.1 | drug/metabolite exporter YedA | - |
| SBBS512_RS06435 () | 864653..865349 | - | 697 | Protein_842 | IS1 family transposase | - |
| SBBS512_RS06440 () | 865383..865739 | - | 357 | WP_005113720.1 | hypothetical protein | - |
| SBBS512_RS06445 () | 865805..866149 | - | 345 | WP_000133375.1 | DUF3168 domain-containing protein | - |
| SBBS512_RS06450 () | 866146..866592 | - | 447 | WP_000569978.1 | HK97 gp10 family phage protein | - |
| SBBS512_RS06455 () | 866589..866939 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| SBBS512_RS06460 () | 866949..867275 | - | 327 | WP_000125994.1 | head-tail connector protein | - |
| SBBS512_RS28450 () | 867272..869592 | - | 2321 | Protein_848 | phage portal protein | - |
| SBBS512_RS06475 () | 869538..869759 | - | 222 | WP_001063101.1 | hypothetical protein | - |
| SBBS512_RS06480 () | 869804..871740 | - | 1937 | Protein_850 | phage major capsid protein | - |
| SBBS512_RS06485 () | 871804..873465 | - | 1662 | WP_012421340.1 | terminase large subunit | - |
| SBBS512_RS06490 () | 873462..874025 | - | 564 | WP_001530008.1 | terminase small subunit | - |
| SBBS512_RS06495 () | 874316..874627 | - | 312 | WP_024258575.1 | HNH endonuclease | - |
| SBBS512_RS06500 () | 874739..874939 | + | 201 | WP_000095744.1 | YlcI/YnfO family protein | - |
| SBBS512_RS06505 () | 875071..875397 | - | 327 | WP_000828072.1 | TonB family protein | - |
| SBBS512_RS33515 () | 875736..876203 | - | 468 | WP_001082565.1 | lysis protein | - |
| SBBS512_RS06520 () | 876205..876318 | - | 114 | WP_000675931.1 | hypothetical protein | - |
| SBBS512_RS06525 () | 876539..877072 | - | 534 | WP_000992061.1 | lysozyme | - |
| SBBS512_RS28460 () | 877178..877450 | + | 273 | WP_000369850.1 | hypothetical protein | - |
| SBBS512_RS06530 () | 877416..877760 | - | 345 | WP_000193278.1 | YdfR family protein | - |
| SBBS512_RS06535 () | 877895..878125 | + | 231 | Protein_861 | IS3 family transposase IS911 | Transposase |
| SBBS512_RS31290 () | 878180..878877 | + | 698 | Protein_862 | IS1 family transposase IS1R | Transposase |
| SBBS512_RS28470 () | 878890..879045 | + | 156 | Protein_863 | IS3 family transposase | - |
| SBBS512_RS06550 () | 879094..879921 | + | 828 | WP_000172700.1 | hypothetical protein | - |
| SBBS512_RS06555 () | 880010..880981 | - | 972 | WP_000425295.1 | Lipid A biosynthesis myristoyltransferase | VF |
| SBBS512_RS06560 () | 881101..882423 | - | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| SBBS512_RS06565 () | 882439..883371 | - | 933 | WP_004983046.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| SBBS512_RS06570 () | 883450..884205 | + | 756 | WP_000203000.1 | Zinc import ATP-binding protein ZnuC | VF |
| SBBS512_RS06575 () | 884202..884987 | + | 786 | WP_000571464.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| SBBS512_RS06580 () | 885037..886047 | - | 1011 | WP_000568512.1 | Holliday junction branch migration DNA helicase RuvB | - |
| SBBS512_RS06585 () | 886056..886667 | - | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| SBBS512_RS31295 () | 886806..886871 | - | 66 | WP_001386853.1 | stress response small protein YobI | - |
| SBBS512_RS31300 () | 886960..887657 | - | 698 | Protein_873 | IS1 family transposase IS1R | Transposase |
| SBBS512_RS28475 () | 887712..887879 | + | 168 | Protein_874 | IS1 family transposase | - |
| SBBS512_RS06610 () | 888628..889044 | + | 417 | Protein_875 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| SBBS512_RS06615 () | 889096..889792 | + | 697 | Protein_876 | IS1 family transposase IS1X2 | Transposase |
| SBBS512_RS28490 () | 889809..889949 | + | 141 | Protein_877 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| SBBS512_RS06620 () | 889946..890689 | + | 744 | WP_001297350.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| SBBS512_RS06625 () | 890701..891786 | + | 1086 | WP_001193778.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| SBBS512_RS06630 () | 891848..892783 | + | 936 | WP_000986308.1 | L,D-transpeptidase | - |
| SBBS512_RS06640 () | 893241..894164 | + | 924 | WP_001011460.1 | nitrogen assimilation transcriptional regulator NAC | - |
| SBBS512_RS06645 () | 894266..895216 | + | 951 | WP_001010992.1 | HTH-type transcriptional regulator Cbl | - |
| SBBS512_RS06650 () | 895558..896106 | - | 549 | WP_001370556.1 | hypothetical protein | VF |
| SBBS512_RS06655 () | 896163..900331 | - | 4169 | Protein_884 | Protein RhsD | VF |
| SBBS512_RS06660 () | 900466..901163 | - | 698 | Protein_885 | IS1 family transposase IS1X2 | Transposase |
| SBBS512_RS06665 () | 902152..903414 | - | 1263 | WP_000479544.1 | Prophage integrase IntA ; Integrase | Integrase |
| SBBS512_RS06675 () | 903656..905299 | + | 1644 | Protein_887 | toxic metabolite efflux MATE transporter YeeO | - |
| SBBS512_RS06685 () | 905928..906644 | - | 717 | WP_000532912.1 | putative transcriptional regulatory protein YeeN | VF |
| SBBS512_RS06690 () | 906987..908420 | - | 1434 | WP_039059176.1 | AMP nucleosidase | - |
| SBBS512_RS06695 () | 908427..909651 | - | 1225 | Protein_890 | IS3 family transposase IS2 | Transposase |
| SBBS512_RS06710 () | 909875..910807 | - | 933 | Protein_891 | shikimate transporter | - |
| SBBS512_RS06730 () | 912156..913384 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| SBBS512_RS32930 () | 913916..920672 | - | 6757 | Protein_894 | Ig-like domain-containing protein | - |
| SBBS512_RS06760 () | 921162..921959 | - | 798 | WP_001302302.1 | DgsA anti-repressor MtfA | - |
| SBBS512_RS06770 () | 922170..922625 | - | 456 | WP_114142313.1 | hypothetical protein ; Integrase | Integrase |
| SBBS512_RS06780 () | 922675..923372 | + | 698 | Protein_897 | IS1 family transposase IS1X2 | Transposase |
| SBBS512_RS28595 () | 923322..923627 | - | 306 | Protein_898 | hypothetical protein | - |
| SBBS512_RS06790 () | 923694..924850 | + | 1157 | WP_129592860.1 | IS3 family transposase IS600 | Transposase |
| SBBS512_RS06795 () | 924894..925193 | - | 300 | Protein_900 | DUF968 domain-containing protein | - |
| SBBS512_RS06800 () | 925233..926771 | - | 1539 | WP_000099170.1 | IS66 family transposase ISEc22 | Transposase |
| SBBS512_RS06805 () | 926820..927167 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| SBBS512_RS06810 () | 927164..927544 | - | 381 | WP_001333468.1 | IS66 family transposase ISEc8 | Transposase |
| SBBS512_RS06815 () | 927637..928098 | - | 462 | Protein_904 | hypothetical protein | - |
| SBBS512_RS06820 () | 928100..928378 | - | 279 | WP_000929754.1 | hypothetical protein | - |
| SBBS512_RS06825 () | 928546..928758 | - | 213 | WP_000935258.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 928713..928771 | + | 59 | - | - | Antitoxin Detail |
| SBBS512_RS06840 () | 929353..929706 | - | 354 | WP_071821547.1 | hypothetical protein | - |
| SBBS512_RS06845 () | 929839..930219 | + | 381 | WP_001333468.1 | IS66 family transposase ISEc8 | Transposase |
| SBBS512_RS06850 () | 930216..930563 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| SBBS512_RS06855 () | 930612..932150 | + | 1539 | WP_000099170.1 | IS66 family transposase ISEc22 | Transposase |
| SBBS512_RS06860 () | 932147..932506 | + | 360 | WP_073692993.1 | 3'-5' exoribonuclease | - |
| SBBS512_RS06865 () | 932565..932768 | + | 204 | WP_048815025.1 | DUF4224 domain-containing protein | - |
| SBBS512_RS06870 () | 932768..933123 | + | 356 | Protein_913 | integrase | - |
| SBBS512_RS06885 () | 934564..935154 | + | 591 | WP_000377820.1 | DUF2313 domain-containing protein | - |
| SBBS512_RS33520 () | 935141..935692 | + | 552 | Protein_916 | phage tail protein | - |
| SBBS512_RS33525 () | 935829..936350 | + | 522 | WP_165850228.1 | hypothetical protein | - |
| SBBS512_RS06900 () | 936353..936898 | + | 546 | WP_000902895.1 | tail fiber assembly protein | - |
| SBBS512_RS06905 () | 936922..937980 | + | 1059 | WP_012421291.1 | prophage tail fiber N-terminal domain-containing protein | - |
| SBBS512_RS06910 () | 937931..938554 | + | 624 | WP_000930154.1 | DUF4376 domain-containing protein | - |
| SBBS512_RS33710 () | 938554..938733 | + | 180 | WP_001039895.1 | hypothetical protein | - |
| SBBS512_RS06920 () | 938734..940377 | - | 1644 | WP_005136793.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| SBBS512_RS06925 () | 940693..941361 | - | 669 | WP_000239869.1 | class I SAM-dependent methyltransferase | - |
| SBBS512_RS06930 () | 941418..941687 | + | 270 | WP_000937487.1 | tail fiber assembly protein | - |
| SBBS512_RS06945 () | 943078..943968 | - | 891 | Protein_926 | trehalose-6-phosphate synthase | - |
| SBBS512_RS06950 () | 943943..944740 | - | 798 | WP_000138775.1 | trehalose-phosphatase | - |
| SBBS512_RS06955 () | 944907..945893 | - | 987 | WP_000100203.1 | arabinose ABC transporter permease AraH | - |
| SBBS512_RS06960 () | 945908..947422 | - | 1515 | WP_001187803.1 | Arabinose import ATP-binding protein AraG | VF |
| SBBS512_RS06965 () | 947492..948481 | - | 990 | WP_005026642.1 | arabinose ABC transporter substrate-binding protein AraF | - |
| SBBS512_RS06970 () | 949195..949698 | + | 504 | WP_000179469.1 | non-heme ferritin-like protein | - |
| SBBS512_RS06975 () | 949777..950028 | - | 252 | WP_000082117.1 | DUF2766 domain-containing protein | - |
| SBBS512_RS31340 () | 950143..950229 | - | 87 | WP_010723106.1 | stress response protein AzuC | - |
| SBBS512_RS06985 () | 950492..950815 | + | 324 | WP_001237866.1 | YecR-like lipofamily protein | - |
| SBBS512_RS06990 () | 950986..951483 | + | 498 | WP_004983027.1 | non-heme ferritin | - |
| SBBS512_RS06995 () | 951521..951760 | - | 240 | WP_000377225.1 | YecH family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|