MGE detailed information
MGE type: Prophage MGE length: 65551 bp
Accession: NC_010658 Location: 1287491..1353041 Organism: Shigella boydii CDC 3083-94 Replicon: chromosome
Accession: NC_010658 Location: 1287491..1353041 Organism: Shigella boydii CDC 3083-94 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SBBS512_RS08935 () | 1283318..1284214 | - | 897 | Protein_1305 | IS4 family transposase | - |
| SBBS512_RS08945 () | 1284338..1287013 | - | 2676 | WP_000301651.1 | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | - |
| SBBS512_RS08950 () | 1287491..1288138 | + | 648 | WP_000616553.1 | NAAT family transporter YchE | - |
| SBBS512_RS08960 () | 1288265..1288953 | + | 689 | Protein_1308 | IS1 family transposase IS1X2 | Transposase |
| SBBS512_RS31450 () | 1288982..1289679 | + | 698 | Protein_1309 | IS1 family transposase IS1R | Transposase |
| SBBS512_RS08975 () | 1290135..1291766 | + | 1632 | WP_012421389.1 | oligopeptide ABC transporter substrate-binding protein OppA | - |
| SBBS512_RS08980 () | 1291852..1292772 | + | 921 | WP_000911105.1 | oligopeptide ABC transporter permease OppB | - |
| SBBS512_RS08985 () | 1292787..1293695 | + | 909 | WP_000979649.1 | oligopeptide ABC transporter permease OppC | - |
| SBBS512_RS08990 () | 1293707..1294720 | + | 1014 | WP_000110943.1 | Oligopeptide transport ATP-binding protein OppD | VF |
| SBBS512_RS08995 () | 1294717..1295721 | + | 1005 | WP_000994889.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| SBBS512_RS09000 () | 1295774..1296103 | - | 330 | WP_000366959.1 | HI1450 family dsDNA-mimic protein | - |
| SBBS512_RS09005 () | 1296138..1297598 | - | 1461 | WP_000214507.1 | cardiolipin synthase | - |
| SBBS512_RS33020 () | 1297741..1297914 | + | 174 | WP_001309467.1 | YciY family protein | - |
| SBBS512_RS09015 () | 1297969..1299222 | - | 1254 | WP_012421280.1 | voltage-gated potassium channel protein | - |
| SBBS512_RS09020 () | 1299522..1299818 | - | 297 | WP_000967592.1 | YciI family protein | - |
| SBBS512_RS09025 () | 1300033..1300761 | + | 729 | WP_165850573.1 | TonB system transport protein TonB | - |
| SBBS512_RS09030 () | 1300801..1301199 | - | 399 | WP_000108160.1 | acyl-CoA thioester hydrolase YciA | - |
| SBBS512_RS09035 () | 1301304..1301843 | - | 540 | WP_000808667.1 | septation protein A | - |
| SBBS512_RS09040 () | 1301873..1302616 | - | 744 | WP_000028541.1 | envelope biogenesis factor ElyC | - |
| SBBS512_RS31455 () | 1302644..1302733 | - | 90 | Protein_1324 | YkgJ family cysteine cluster protein | - |
| SBBS512_RS09045 () | 1302973..1303611 | + | 639 | WP_000737224.1 | outer membrane protein OmpW | - |
| SBBS512_RS09050 () | 1303657..1304787 | - | 1131 | WP_000113683.1 | hypothetical protein ; Integrase | Integrase |
| SBBS512_RS09055 () | 1304765..1305013 | - | 249 | WP_000113189.1 | excisionase | - |
| SBBS512_RS09060 () | 1305078..1307549 | - | 2472 | WP_000048384.1 | exonuclease | - |
| SBBS512_RS09065 () | 1307645..1307833 | - | 189 | WP_000199473.1 | DUF1482 family protein | - |
| SBBS512_RS09070 () | 1307830..1308018 | - | 189 | WP_000449175.1 | cell division inhibitor | - |
| SBBS512_RS09080 () | 1308590..1308868 | + | 279 | WP_000358769.1 | hypothetical protein | - |
| SBBS512_RS09085 () | 1308828..1309229 | - | 402 | WP_001339605.1 | hypothetical protein | - |
| SBBS512_RS09090 () | 1309241..1309393 | - | 153 | WP_001725971.1 | DUF1391 family protein | - |
| SBBS512_RS09095 () | 1309659..1310078 | - | 420 | WP_000362153.1 | hypothetical protein | - |
| SBBS512_RS09100 () | 1310179..1310460 | + | 282 | WP_000391950.1 | helix-turn-helix domain-containing protein | - |
| SBBS512_RS09105 () | 1310444..1310869 | + | 426 | WP_000693888.1 | Rha family transcriptional regulator | - |
| SBBS512_RS09110 () | 1310892..1311854 | + | 963 | WP_000095673.1 | helix-turn-helix domain-containing protein | - |
| SBBS512_RS09115 () | 1311861..1312607 | + | 747 | WP_000788950.1 | IS21 family transposase ISAba8 | Transposase |
| SBBS512_RS09120 () | 1312629..1313399 | + | 771 | WP_000450998.1 | DUF1627 domain-containing protein | - |
| SBBS512_RS09125 () | 1313415..1313840 | + | 426 | WP_001151161.1 | DUF977 family protein | - |
| SBBS512_RS09130 () | 1314015..1314680 | + | 666 | WP_000150294.1 | epoxyqueuosine reductase QueH | - |
| - () | 1314848..1314906 | - | 59 | - | - | Antitoxin Detail |
| SBBS512_RS09135 () | 1314861..1315073 | + | 213 | WP_000018429.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| SBBS512_RS28875 () | 1315241..1315513 | + | 273 | WP_001329966.1 | hypothetical protein | - |
| SBBS512_RS09145 () | 1315587..1316570 | + | 984 | WP_162766644.1 | DUF968 domain-containing protein | - |
| SBBS512_RS09150 () | 1316571..1316951 | + | 381 | WP_000140012.1 | RusA family crossover junction endodeoxyribonuclease | - |
| SBBS512_RS09155 () | 1316948..1317769 | + | 822 | WP_000762914.1 | antitermination protein | - |
| SBBS512_RS09160 () | 1317996..1318236 | + | 241 | Protein_1347 | hypothetical protein | - |
| SBBS512_RS09165 () | 1318344..1319393 | + | 1050 | WP_000935515.1 | site-specific DNA-methyltransferase | - |
| SBBS512_RS09190 () | 1320668..1322524 | + | 1857 | WP_000874529.1 | DUF1737 domain-containing protein | - |
| SBBS512_RS09195 () | 1322675..1322890 | + | 216 | WP_000284510.1 | class II holin family protein | - |
| SBBS512_RS09200 () | 1322895..1323209 | + | 315 | WP_000193273.1 | YdfR family protein | - |
| SBBS512_RS09205 () | 1323265..1323798 | + | 534 | WP_001274715.1 | lysozyme | - |
| SBBS512_RS09210 () | 1323795..1324253 | + | 459 | WP_000091923.1 | lysis protein | - |
| SBBS512_RS09215 () | 1324670..1325290 | + | 621 | WP_000654791.1 | sce7726 family protein | - |
| SBBS512_RS28880 () | 1325232..1326299 | - | 1068 | WP_000077906.1 | beta family protein | - |
| SBBS512_RS09220 () | 1326710..1327258 | + | 549 | WP_000867575.1 | terminase small subunit | - |
| SBBS512_RS09225 () | 1327230..1329158 | + | 1929 | WP_000622379.1 | phage terminase large subunit family protein | - |
| SBBS512_RS09230 () | 1329142..1329348 | + | 207 | WP_000259002.1 | head-tail joining protein | - |
| SBBS512_RS09235 () | 1329345..1330937 | + | 1593 | WP_000831818.1 | phage portal protein | - |
| SBBS512_RS09240 () | 1330927..1332432 | + | 1506 | WP_001253958.1 | S49 family peptidase | - |
| SBBS512_RS09245 () | 1332469..1332816 | + | 348 | WP_000256823.1 | head decoration protein | - |
| SBBS512_RS09250 () | 1332874..1333902 | + | 1029 | WP_000522584.1 | major capsid protein | - |
| SBBS512_RS09255 () | 1333954..1334337 | + | 384 | WP_000201495.1 | hypothetical protein | - |
| SBBS512_RS09260 () | 1334330..1334683 | + | 354 | WP_001204554.1 | tail attachment protein | - |
| SBBS512_RS09265 () | 1334699..1335232 | + | 534 | WP_000974980.1 | phage tail protein | - |
| SBBS512_RS09270 () | 1335229..1335624 | + | 396 | WP_000683079.1 | phage minor tail U family protein | - |
| SBBS512_RS09275 () | 1335632..1336384 | + | 753 | WP_000235110.1 | phage tail protein | - |
| SBBS512_RS09280 () | 1336398..1336829 | + | 432 | WP_000479095.1 | phage minor tail protein G | - |
| SBBS512_RS09285 () | 1336856..1337269 | + | 414 | WP_000533402.1 | phage tail assembly protein T | - |
| SBBS512_RS09290 () | 1337250..1339823 | + | 2574 | WP_000082350.1 | phage tail tape measure protein | - |
| SBBS512_RS09295 () | 1339820..1340149 | + | 330 | WP_000847402.1 | phage tail protein | - |
| SBBS512_RS09300 () | 1340149..1340847 | + | 699 | WP_001152522.1 | phage minor tail protein L | - |
| SBBS512_RS09305 () | 1340852..1341595 | + | 744 | WP_012421494.1 | C40 family peptidase | - |
| SBBS512_RS09310 () | 1341532..1342134 | + | 603 | WP_000090879.1 | tail assembly protein | - |
| SBBS512_RS33560 () | 1342208..1342546 | + | 339 | WP_001332187.1 | hypothetical protein | - |
| SBBS512_RS09315 () | 1342613..1346092 | + | 3480 | Protein_1376 | host specificity protein J | - |
| SBBS512_RS09320 () | 1346160..1346759 | + | 600 | WP_001233195.1 | Outer membrane protein X | VF |
| SBBS512_RS09325 () | 1346911..1349886 | + | 2976 | WP_000216494.1 | phage tail protein | - |
| SBBS512_RS09330 () | 1349886..1350470 | + | 585 | WP_000885580.1 | tail fiber assembly protein | - |
| SBBS512_RS09335 () | 1350525..1351193 | - | 669 | WP_000240999.1 | class I SAM-dependent methyltransferase | - |
| SBBS512_RS09340 () | 1351250..1351519 | + | 270 | WP_000937495.1 | tail fiber assembly protein | - |
| SBBS512_RS33565 () | 1351559..1351804 | + | 246 | WP_157767059.1 | hypothetical protein | - |
| SBBS512_RS28895 () | 1352108..1352233 | + | 126 | Protein_1383 | outer membrane protein OmpW | - |
| SBBS512_RS09350 () | 1352344..1353041 | + | 698 | Protein_1384 | IS1 family transposase IS1X2 | Transposase |
| SBBS512_RS09355 () | 1353285..1354091 | - | 807 | WP_000443068.1 | tryptophan synthase subunit alpha | - |
| SBBS512_RS09360 () | 1354091..1355284 | - | 1194 | WP_000209504.1 | tryptophan synthase subunit beta | - |
| SBBS512_RS09365 () | 1355296..1356657 | - | 1362 | WP_000983896.1 | bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|