MGE detailed information
MGE type: Prophage MGE length: 67736 bp
Accession: NC_010468 Location: 2252029..2319764 Organism: Escherichia coli ATCC 8739 Replicon: chromosome
Accession: NC_010468 Location: 2252029..2319764 Organism: Escherichia coli ATCC 8739 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECOLC_RS10935 () | 2247928..2249148 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| ECOLC_RS10940 () | 2249273..2249968 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| ECOLC_RS10945 () | 2249921..2251213 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| ECOLC_RS10950 () | 2251372..2251986 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| ECOLC_RS10955 () | 2252029..2252883 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| ECOLC_RS10960 () | 2252885..2253502 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| ECOLC_RS10965 () | 2253513..2255936 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| ECOLC_RS10970 () | 2255997..2258423 | - | 2427 | WP_000041681.1 | dimethyl sulfoxide reductase subunit A | - |
| ECOLC_RS10975 () | 2258622..2258927 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| ECOLC_RS10980 () | 2259035..2259745 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| ECOLC_RS10985 () | 2259748..2260308 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| ECOLC_RS10990 () | 2260343..2260684 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| ECOLC_RS10995 () | 2260819..2261145 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| ECOLC_RS11000 () | 2261351..2262565 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| ECOLC_RS11005 () | 2262577..2263596 | + | 1020 | WP_000836051.1 | Zn-dependent oxidoreductase | - |
| ECOLC_RS25355 () | 2263654..2263764 | + | 111 | WP_001360138.1 | hypothetical protein | - |
| ECOLC_RS11010 () | 2263784..2265064 | - | 1281 | WP_000876960.1 | Putative defective protein IntQ ; Integrase | Integrase |
| ECOLC_RS11015 () | 2265099..2265350 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| ECOLC_RS11020 () | 2265423..2267900 | - | 2478 | WP_000048362.1 | exonuclease | - |
| ECOLC_RS11025 () | 2267993..2268184 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| ECOLC_RS11030 () | 2268181..2268369 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| ECOLC_RS11040 () | 2268937..2269155 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| ECOLC_RS11045 () | 2269315..2269470 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| ECOLC_RS11050 () | 2269637..2270044 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| ECOLC_RS11055 () | 2270128..2270358 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| ECOLC_RS11060 () | 2270342..2270863 | + | 522 | WP_000705358.1 | hypothetical protein | - |
| ECOLC_RS11065 () | 2270844..2271809 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| ECOLC_RS11070 () | 2271850..2272272 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| ECOLC_RS11075 () | 2272269..2272625 | + | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| ECOLC_RS26235 () | 2273236..2273523 | + | 288 | Protein_2110 | hypothetical protein | - |
| ECOLC_RS11090 () | 2274292..2275605 | + | 1314 | WP_000589006.1 | ISNCY family transposase ISCARN112 | Transposase |
| ECOLC_RS11095 () | 2276067..2276399 | - | 333 | WP_001301033.1 | protein FlxA | - |
| ECOLC_RS24235 () | 2276602..2276907 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| ECOLC_RS11100 () | 2276932..2277171 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| ECOLC_RS11105 () | 2277171..2277458 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| ECOLC_RS11110 () | 2277530..2277685 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| ECOLC_RS11115 () | 2277902..2278153 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| ECOLC_RS11120 () | 2278220..2278498 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| ECOLC_RS11125 () | 2278500..2279549 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| ECOLC_RS11130 () | 2279563..2280315 | + | 753 | WP_001047134.1 | antitermination protein | - |
| ECOLC_RS25820 () | 2280593..2280682 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| ECOLC_RS11135 () | 2280737..2280949 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| ECOLC_RS11140 () | 2281250..2281465 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| ECOLC_RS11145 () | 2282219..2282434 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| ECOLC_RS11150 () | 2282439..2282750 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| ECOLC_RS11155 () | 2282747..2283280 | + | 534 | WP_001092971.1 | lysozyme | - |
| ECOLC_RS11160 () | 2283277..2283774 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| ECOLC_RS11165 () | 2284137..2284349 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| ECOLC_RS24240 () | 2284360..2284548 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| ECOLC_RS25825 () | 2284551..2284616 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| ECOLC_RS11170 () | 2284696..2284851 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| ECOLC_RS11175 () | 2285023..2285196 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| ECOLC_RS11180 () | 2285348..2285758 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| ECOLC_RS11185 () | 2285816..2286049 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| ECOLC_RS11200 () | 2286438..2286983 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| ECOLC_RS11205 () | 2286958..2288883 | + | 1926 | WP_001027293.1 | phage terminase large subunit family protein | - |
| ECOLC_RS11210 () | 2288880..2289086 | + | 207 | WP_000198149.1 | gpW family protein | - |
| ECOLC_RS11215 () | 2289083..2290684 | + | 1602 | WP_001529148.1 | phage portal protein | - |
| ECOLC_RS11220 () | 2290665..2291984 | + | 1320 | WP_000123311.1 | S49 family peptidase | - |
| ECOLC_RS11225 () | 2291994..2292326 | + | 333 | WP_012304872.1 | head decoration protein | - |
| ECOLC_RS11230 () | 2292382..2293407 | + | 1026 | WP_000063254.1 | major capsid protein | - |
| ECOLC_RS11235 () | 2293449..2293844 | + | 396 | WP_000158875.1 | DNA-packaging protein FI | - |
| ECOLC_RS11240 () | 2293856..2294209 | + | 354 | WP_000785282.1 | head-tail joining protein | - |
| ECOLC_RS11245 () | 2294221..2294797 | + | 577 | Protein_2144 | phage tail protein | - |
| ECOLC_RS11250 () | 2294794..2295189 | + | 396 | WP_000683129.1 | phage minor tail U family protein | - |
| ECOLC_RS11255 () | 2295197..2295937 | + | 741 | WP_001361512.1 | phage tail protein | - |
| ECOLC_RS11260 () | 2295953..2296375 | + | 423 | WP_000479193.1 | phage minor tail protein G | - |
| ECOLC_RS11265 () | 2296357..2296791 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| ECOLC_RS11270 () | 2296784..2299345 | + | 2562 | WP_000840289.1 | phage tail tape measure protein | - |
| ECOLC_RS11275 () | 2299342..2299671 | + | 330 | WP_000847347.1 | phage tail protein | - |
| ECOLC_RS11280 () | 2299671..2300369 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| ECOLC_RS11285 () | 2300375..2301118 | + | 744 | WP_012304874.1 | C40 family peptidase | - |
| ECOLC_RS11290 () | 2301055..2301687 | + | 633 | WP_000090892.1 | tail assembly protein | - |
| ECOLC_RS11295 () | 2301748..2305227 | + | 3480 | WP_000515744.1 | host specificity protein J | - |
| ECOLC_RS11300 () | 2305295..2305894 | + | 600 | WP_001233110.1 | Outer membrane protein X | VF |
| ECOLC_RS24245 () | 2305959..2308982 | + | 3024 | WP_000279128.1 | prophage tail fiber N-terminal domain-containing protein | - |
| ECOLC_RS11325 () | 2308982..2309557 | + | 576 | WP_000885587.1 | tail fiber assembly protein | - |
| ECOLC_RS11330 () | 2309655..2310245 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| ECOLC_RS11335 () | 2310562..2310795 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| ECOLC_RS25830 () | 2310864..2310977 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| ECOLC_RS11340 () | 2311582..2312865 | + | 1284 | Protein_2161 | MHS family MFS transporter YdfJ | - |
| ECOLC_RS11345 () | 2312954..2314414 | + | 1461 | WP_000527806.1 | mannitol dehydrogenase family protein | - |
| ECOLC_RS11350 () | 2314450..2314653 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| ECOLC_RS11355 () | 2314830..2315516 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| ECOLC_RS11360 () | 2315605..2316351 | - | 747 | WP_001324973.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| ECOLC_RS11365 () | 2316488..2318533 | + | 2046 | WP_001437709.1 | peptidyl-dipeptidase Dcp | - |
| ECOLC_RS11370 () | 2318578..2319096 | - | 519 | WP_001024560.1 | 2-oxo-tetronate isomerase | - |
| ECOLC_RS11375 () | 2319372..2319764 | + | 393 | WP_000671731.1 | YdeI family stress tolerance OB fold protein | - |
| ECOLC_RS11380 () | 2320019..2320909 | + | 891 | WP_000592826.1 | diguanylate cyclase DgcZ | - |
| ECOLC_RS11385 () | 2321128..2321223 | - | 96 | WP_000901367.1 | protein MgtS | - |
| ECOLC_RS11390 () | 2321350..2322537 | - | 1188 | WP_001054207.1 | efflux MFS transporter YdeE | - |
| ECOLC_RS11395 () | 2322732..2323631 | + | 900 | WP_000087214.1 | O-acetylserine/cysteine exporter | - |
| ECOLC_RS11400 () | 2323662..2323880 | - | 219 | WP_000803659.1 | multiple antibiotic resistance protein MarB | - |
| ECOLC_RS11405 () | 2323912..2324295 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| ECOLC_RS11410 () | 2324315..2324749 | - | 435 | WP_000843419.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|