MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 69860 bp
Accession: NC_010125 Location: 972254..1042113 Organism: Gluconacetobacter diazotrophicus PAl 5 Replicon: chromosome
Accession: NC_010125 Location: 972254..1042113 Organism: Gluconacetobacter diazotrophicus PAl 5 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GDI_RS18860 () | 967982..969640 | - | 1659 | WP_081482917.1 | recombinase family protein | - |
| GDI_RS04555 () | 970241..972298 | + | 2058 | WP_012223814.1 | ParB/RepB/Spo0J family partition protein | - |
| GDI_RS04560 () | 972402..973124 | - | 723 | WP_012223815.1 | hypothetical protein | - |
| GDI_RS18865 () | 973287..973822 | + | 536 | Protein_902 | IS481 family transposase ISGdi9 | Transposase |
| GDI_RS04565 () | 973823..974233 | - | 411 | Protein_903 | DNA methylase | - |
| GDI_RS04570 () | 974485..975165 | - | 681 | WP_012223817.1 | 4-hydroxythreonine-4-phosphate dehydrogenase | - |
| GDI_RS04575 () | 975162..976166 | - | 1005 | WP_041249281.1 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | - |
| GDI_RS04580 () | 976242..977099 | + | 858 | WP_012223819.1 | LysR family transcriptional regulator | - |
| GDI_RS04585 () | 977390..978661 | + | 1272 | WP_012223821.1 | SIR2 family protein | - |
| GDI_RS04590 () | 979096..980484 | + | 1389 | WP_157871089.1 | ATP-binding protein | - |
| GDI_RS04595 () | 980610..982151 | + | 1542 | WP_012223825.1 | Serine/threonine-protein kinase StkP | VF |
| GDI_RS04605 () | 982232..983349 | + | 1118 | WP_157864127.1 | IS3 family transposase ISGdi11 | Transposase |
| GDI_RS04610 () | 983509..985695 | - | 2187 | WP_012223826.1 | ATP-dependent RecD-like DNA helicase | - |
| GDI_RS18870 () | 985937..986125 | + | 189 | WP_081482848.1 | hypothetical protein | - |
| GDI_RS04615 () | 986139..987845 | + | 1707 | WP_012223829.1 | IS607 family transposase ISNma20 | Transposase |
| GDI_RS04620 () | 987955..988320 | + | 366 | WP_041249676.1 | DUF2384 domain-containing protein | - |
| GDI_RS04625 () | 988344..988523 | + | 180 | WP_041249283.1 | Arm DNA-binding domain-containing protein | - |
| GDI_RS18875 () | 988759..989463 | + | 705 | WP_157870991.1 | DUF4433 domain-containing protein | - |
| GDI_RS04635 () | 989467..990522 | + | 1056 | WP_012223837.1 | macro domain-containing protein | - |
| GDI_RS19640 () | 990667..990857 | - | 191 | Protein_918 | IS5/IS1182 family transposase | - |
| GDI_RS18880 () | 990874..991819 | - | 946 | Protein_919 | IS630 family transposase | - |
| GDI_RS04645 () | 992285..993574 | + | 1290 | WP_041249285.1 | IS21 family transposase ISSme2 | Transposase |
| GDI_RS04650 () | 993574..994374 | + | 801 | WP_041249286.1 | IS21 family transposase ISSme2 | Transposase |
| GDI_RS04655 () | 994371..995447 | + | 1077 | WP_012223848.1 | DUF4917 family protein | - |
| GDI_RS04660 () | 995922..996980 | - | 1059 | WP_012222646.1 | IS481 family transposase ISGdi10 | Transposase |
| GDI_RS19645 () | 998399..999172 | - | 774 | WP_012223855.1 | hypothetical protein | - |
| GDI_RS18885 () | 999258..1000087 | + | 830 | WP_156472016.1 | IS5 family transposase ISMdi21 | Transposase |
| GDI_RS04690 () | 1000298..1001542 | + | 1245 | WP_197535946.1 | hypothetical protein | - |
| GDI_RS04695 () | 1001646..1002785 | - | 1140 | WP_012223859.1 | MFS transporter | - |
| GDI_RS18890 () | 1002819..1003804 | - | 986 | Protein_929 | IS481 family transposase ISGdi9 | Transposase |
| GDI_RS04705 () | 1003901..1004224 | + | 324 | WP_012223861.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| GDI_RS04710 () | 1004278..1005174 | + | 897 | WP_012223862.1 | 2-dehydropantoate 2-reductase | - |
| GDI_RS04715 () | 1005440..1006963 | + | 1524 | WP_041249290.1 | IS21 family transposase ISGdi17 | Transposase |
| GDI_RS04720 () | 1006953..1007732 | + | 780 | WP_012223864.1 | IS21 family transposase ISGdi17 | Transposase |
| GDI_RS04725 () | 1007990..1008433 | - | 444 | WP_012223865.1 | helix-turn-helix transcriptional regulator | - |
| GDI_RS04730 () | 1008529..1009728 | + | 1200 | WP_012223866.1 | MFS transporter | - |
| GDI_RS04735 () | 1009922..1010527 | - | 606 | WP_173363399.1 | nitroreductase family protein | - |
| GDI_RS04740 () | 1010577..1011413 | - | 837 | WP_012223868.1 | fumarylacetoacetate hydrolase family protein | - |
| GDI_RS04745 () | 1011430..1012155 | - | 726 | WP_012223869.1 | pirin family protein | - |
| GDI_RS04750 () | 1012152..1013717 | - | 1566 | WP_041249291.1 | TolC family protein | - |
| GDI_RS04755 () | 1013728..1014804 | - | 1077 | WP_012223871.1 | putative multidrug resistance protein EmrK | VF |
| GDI_RS20030 () | 1014864..1015025 | - | 162 | WP_012223872.1 | hypothetical protein | - |
| GDI_RS04760 () | 1015058..1016719 | - | 1662 | WP_041249292.1 | MFS transporter | - |
| GDI_RS04765 () | 1016972..1017925 | + | 954 | WP_012223874.1 | LysR family transcriptional regulator | - |
| GDI_RS04770 () | 1017913..1018671 | - | 759 | WP_012223875.1 | FadR family transcriptional regulator | - |
| GDI_RS04775 () | 1018876..1019475 | + | 600 | WP_012223876.1 | glutathione S-transferase | - |
| GDI_RS04780 () | 1019472..1020062 | + | 591 | WP_041249293.1 | hypothetical protein | - |
| GDI_RS04785 () | 1020052..1020969 | - | 918 | WP_012223878.1 | HTH-type transcriptional regulator DmlR | VF |
| GDI_RS04790 () | 1021071..1021862 | + | 792 | WP_012223879.1 | NAD(P)H-dependent oxidoreductase | - |
| GDI_RS04795 () | 1021979..1022716 | + | 738 | Protein_949 | Hydrogen peroxide-inducible genes activator | VF |
| GDI_RS04800 () | 1022770..1023834 | - | 1065 | Protein_950 | IS481 family transposase ISGdi10 | Transposase |
| GDI_RS04805 () | 1024230..1025183 | + | 954 | WP_041249294.1 | ketopantoate reductase family protein | - |
| GDI_RS04810 () | 1025350..1025595 | - | 246 | WP_012223883.1 | DUF2274 domain-containing protein | - |
| GDI_RS04815 () | 1025592..1026713 | - | 1122 | WP_173363367.1 | Type IV secretion system protein virB10 | VF |
| GDI_RS04820 () | 1026749..1027735 | - | 987 | WP_012223885.1 | P-type conjugative transfer protein TrbG | - |
| GDI_RS04825 () | 1027735..1028415 | - | 681 | WP_012223886.1 | conjugal transfer protein TrbF | - |
| GDI_RS04830 () | 1028418..1029677 | - | 1260 | WP_012223887.1 | P-type conjugative transfer protein TrbL | - |
| GDI_RS04835 () | 1029682..1029954 | - | 273 | WP_041249295.1 | putative entry exclusion protein TrbK-alt | - |
| GDI_RS04840 () | 1029954..1030700 | - | 747 | WP_012223888.1 | P-type conjugative transfer protein TrbJ | - |
| GDI_RS04845 () | 1030697..1033123 | - | 2427 | WP_012223889.1 | conjugal transfer protein TrbE | - |
| GDI_RS04850 () | 1033131..1033397 | - | 267 | WP_012223891.1 | VirB3 family type IV secretion system protein | - |
| GDI_RS04855 () | 1033397..1033723 | - | 327 | WP_081482849.1 | TrbC/VirB2 family protein | - |
| GDI_RS04860 () | 1033720..1034688 | - | 969 | WP_012223893.1 | Type IV secretion system protein VirB11 | VF |
| GDI_RS04865 () | 1034903..1035172 | + | 270 | WP_012223894.1 | HU family DNA-binding protein | - |
| GDI_RS19650 () | 1035254..1036783 | + | 1530 | WP_157870993.1 | hypothetical protein | - |
| GDI_RS04870 () | 1036903..1037328 | - | 426 | WP_012223896.1 | hypothetical protein | - |
| GDI_RS04875 () | 1037334..1039316 | - | 1983 | WP_012223897.1 | Conjugal transfer protein TraG | VF |
| GDI_RS04880 () | 1039474..1039764 | - | 291 | WP_012223901.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GDI_RS04885 () | 1039757..1040005 | - | 249 | WP_041249296.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| GDI_RS04890 () | 1040085..1040357 | - | 273 | WP_012223909.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| GDI_RS04895 () | 1040448..1042202 | - | 1755 | WP_012223910.1 | VirD2 family relaxase/mobilization nuclease | - |
| GDI_RS19655 () | 1042186..1042398 | - | 213 | WP_157870994.1 | hypothetical protein | - |
| GDI_RS04900 () | 1042913..1043452 | + | 540 | Protein_972 | IS481 family transposase | - |
| GDI_RS04905 () | 1043506..1044354 | - | 849 | Protein_973 | site-specific integrase | - |
| GDI_RS04915 () | 1044640..1046499 | - | 1860 | WP_012554378.1 | single-stranded-DNA-specific exonuclease RecJ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|