MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 106706 bp
Accession: NC_009719 Location: 1295685..1402390 Organism: Parvibaculum lavamentivorans DS-1 Replicon: chromosome
Accession: NC_009719 Location: 1295685..1402390 Organism: Parvibaculum lavamentivorans DS-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PLAV_RS05930 () | 1291855..1292916 | + | 1062 | WP_012110050.1 | TRAP transporter substrate-binding protein | - |
| PLAV_RS05935 () | 1293160..1294974 | + | 1815 | WP_012110051.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| PLAV_RS05945 () | 1295666..1296751 | + | 1086 | WP_143710292.1 | Ppx/GppA family phosphatase | - |
| PLAV_RS05950 () | 1296763..1297527 | + | 765 | WP_012110053.1 | RlmE family RNA methyltransferase | - |
| PLAV_RS05955 () | 1297640..1299100 | + | 1461 | WP_012110054.1 | IMP dehydrogenase | - |
| PLAV_RS05960 () | 1299129..1300430 | + | 1302 | WP_012110055.1 | RsmB/NOP family class I SAM-dependent RNA methyltransferase | - |
| PLAV_RS05965 () | 1300427..1301014 | + | 588 | WP_012110056.1 | hypothetical protein | - |
| PLAV_RS05970 () | 1301022..1302572 | + | 1551 | WP_041535874.1 | glutamine-hydrolyzing GMP synthase | - |
| PLAV_RS05975 () | 1302889..1304145 | + | 1257 | WP_012110058.1 | Prophage integrase IntA ; Integrase | Integrase |
| PLAV_RS05980 () | 1304123..1304407 | - | 285 | WP_012110059.1 | AlpA family phage regulatory protein | - |
| PLAV_RS05985 () | 1304571..1305293 | - | 723 | WP_012110060.1 | hypothetical protein | - |
| PLAV_RS05990 () | 1305301..1307337 | - | 2037 | WP_012110061.1 | BREX-3 system phosphatase PglZ | - |
| PLAV_RS05995 () | 1307334..1310159 | - | 2826 | WP_012110062.1 | DEAD/DEAH box helicase family protein | - |
| PLAV_RS06000 () | 1310163..1312925 | - | 2763 | WP_012110063.1 | DNA methylase | - |
| PLAV_RS06005 () | 1312943..1314832 | - | 1890 | WP_012110064.1 | ATP-binding protein | - |
| PLAV_RS06010 () | 1314822..1316684 | - | 1863 | WP_012110065.1 | putative DNA binding domain-containing protein | - |
| PLAV_RS06015 () | 1316689..1320429 | - | 3741 | WP_012110066.1 | hypothetical protein | - |
| PLAV_RS06020 () | 1320451..1320948 | - | 498 | WP_012110068.1 | BREX-3 system P-loop-containing protein BrxF | - |
| PLAV_RS06025 () | 1320945..1321163 | - | 219 | WP_012110069.1 | helix-turn-helix domain-containing protein | - |
| PLAV_RS06030 () | 1321422..1322315 | + | 894 | WP_012110070.1 | HTH-type transcriptional regulator GltC | VF |
| PLAV_RS06035 () | 1322310..1322549 | - | 240 | WP_012110071.1 | DUF2274 domain-containing protein | - |
| PLAV_RS06040 () | 1322551..1323735 | - | 1185 | WP_012110072.1 | hypothetical protein | VF |
| PLAV_RS06045 () | 1323732..1324712 | - | 981 | WP_012110073.1 | P-type conjugative transfer protein TrbG | - |
| PLAV_RS06050 () | 1324709..1325398 | - | 690 | WP_012110074.1 | conjugal transfer protein TrbF | - |
| PLAV_RS06055 () | 1325395..1326756 | - | 1362 | WP_012110075.1 | hypothetical protein | VF |
| PLAV_RS06060 () | 1326760..1327044 | - | 285 | WP_012110076.1 | putative entry exclusion protein TrbK-alt | - |
| PLAV_RS06065 () | 1327055..1327834 | - | 780 | WP_012110077.1 | P-type conjugative transfer protein TrbJ | - |
| PLAV_RS06070 () | 1327840..1330290 | - | 2451 | WP_012110078.1 | conjugal transfer protein TrbE | - |
| PLAV_RS06075 () | 1330305..1330586 | - | 282 | WP_012110080.1 | VirB3 family type IV secretion system protein | - |
| PLAV_RS06080 () | 1330586..1330918 | - | 333 | WP_012110081.1 | TrbC/VirB2 family protein | - |
| PLAV_RS06085 () | 1330915..1331898 | - | 984 | WP_012110083.1 | hypothetical protein | VF |
| PLAV_RS06090 () | 1332067..1332516 | - | 450 | WP_012110084.1 | hypothetical protein | - |
| PLAV_RS06095 () | 1332521..1334512 | - | 1992 | WP_012110085.1 | Conjugal transfer protein TraG | VF |
| PLAV_RS06100 () | 1334539..1336278 | - | 1740 | WP_012110086.1 | VirD2 family relaxase/mobilization nuclease | - |
| PLAV_RS06105 () | 1336522..1337301 | - | 780 | WP_012110087.1 | Membrane-bound lytic murein transglycosylase C | VF |
| PLAV_RS06110 () | 1337305..1337652 | - | 348 | WP_041536413.1 | DUF736 domain-containing protein | - |
| PLAV_RS06115 () | 1337721..1338266 | - | 546 | WP_012110089.1 | S26 family signal peptidase | - |
| PLAV_RS06120 () | 1338263..1338784 | - | 522 | WP_012110090.1 | DUF2840 domain-containing protein | - |
| PLAV_RS06125 () | 1338781..1339032 | - | 252 | WP_012110091.1 | hypothetical protein | - |
| PLAV_RS06130 () | 1339029..1339682 | - | 654 | WP_012110092.1 | Chromosome-partitioning ATPase Soj | VF |
| PLAV_RS06135 () | 1339679..1340839 | - | 1161 | WP_012110093.1 | replication initiator protein A | - |
| PLAV_RS06140 () | 1340858..1341139 | - | 282 | WP_012110094.1 | helix-turn-helix domain-containing protein | - |
| PLAV_RS06145 () | 1341276..1341905 | - | 630 | WP_083762510.1 | DUF2285 domain-containing protein | - |
| PLAV_RS06150 () | 1342168..1342428 | - | 261 | WP_012110096.1 | DUF2285 domain-containing protein | - |
| PLAV_RS06155 () | 1342525..1342791 | - | 267 | WP_012110097.1 | helix-turn-helix transcriptional regulator | - |
| PLAV_RS06160 () | 1343099..1343425 | - | 327 | WP_041535876.1 | DUF736 domain-containing protein | - |
| PLAV_RS06170 () | 1343998..1344438 | - | 441 | WP_012110100.1 | hypothetical protein | - |
| PLAV_RS19615 () | 1344573..1344740 | - | 168 | WP_012110101.1 | hypothetical protein | - |
| PLAV_RS06175 () | 1345022..1345444 | - | 423 | WP_012110102.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PLAV_RS06180 () | 1345441..1345695 | - | 255 | WP_012110103.1 | plasmid stabilization protein | Antitoxin Detail |
| PLAV_RS06185 () | 1345782..1346708 | - | 927 | WP_012110104.1 | DUF2493 domain-containing protein | - |
| PLAV_RS06190 () | 1347060..1348094 | - | 1035 | WP_012110105.1 | toprim domain-containing protein | - |
| PLAV_RS06195 () | 1348094..1352413 | - | 4320 | WP_012110106.1 | strawberry notch family protein | - |
| PLAV_RS06200 () | 1352572..1352868 | - | 297 | WP_012110107.1 | hypothetical protein | - |
| PLAV_RS06205 () | 1352865..1353131 | - | 267 | WP_012110108.1 | hypothetical protein | - |
| PLAV_RS06210 () | 1353128..1353544 | - | 417 | WP_012110109.1 | hypothetical protein | - |
| PLAV_RS06215 () | 1353675..1355795 | - | 2121 | WP_012110110.1 | ParB/RepB/Spo0J family partition protein | - |
| PLAV_RS06220 () | 1355957..1356919 | - | 963 | WP_012110111.1 | DUF1738 domain-containing protein | - |
| PLAV_RS06225 () | 1357160..1357753 | + | 594 | WP_012110112.1 | hypothetical protein | - |
| PLAV_RS06230 () | 1357746..1358762 | + | 1017 | WP_012110113.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| PLAV_RS06235 () | 1358846..1361620 | + | 2775 | WP_012110114.1 | AAA family ATPase | - |
| PLAV_RS06240 () | 1361617..1363533 | + | 1917 | WP_012110115.1 | hypothetical protein | - |
| PLAV_RS06245 () | 1363780..1364793 | + | 1014 | WP_012110116.1 | adenosine kinase | - |
| PLAV_RS06250 () | 1364794..1365774 | - | 981 | WP_012110117.1 | type I pantothenate kinase | - |
| PLAV_RS06255 () | 1365774..1366103 | - | 330 | WP_012110118.1 | phosphoribosyl-ATP diphosphatase | - |
| PLAV_RS18785 () | 1366218..1367309 | - | 1092 | WP_012110119.1 | pentapeptide repeat-containing protein | - |
| PLAV_RS06265 () | 1367472..1368998 | - | 1527 | WP_012110120.1 | CYTH and CHAD domain-containing protein | - |
| PLAV_RS06270 () | 1369171..1369932 | - | 762 | WP_012110121.1 | imidazole glycerol phosphate synthase subunit HisF | - |
| PLAV_RS06275 () | 1369929..1370660 | - | 732 | WP_012110122.1 | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | - |
| PLAV_RS06280 () | 1370671..1371321 | - | 651 | WP_012110123.1 | imidazole glycerol phosphate synthase subunit HisH | - |
| PLAV_RS06285 () | 1371326..1371814 | - | 489 | WP_012110124.1 | DUF2628 domain-containing protein | - |
| PLAV_RS06290 () | 1371917..1372528 | - | 612 | WP_012110125.1 | imidazoleglycerol-phosphate dehydratase HisB | - |
| PLAV_RS06295 () | 1372816..1373430 | - | 615 | WP_012110126.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| PLAV_RS06300 () | 1373564..1374112 | + | 549 | WP_012110127.1 | ATP-dependent protease subunit HslV | - |
| PLAV_RS06305 () | 1374160..1375467 | + | 1308 | WP_012110128.1 | ATP-dependent protease ATPase subunit HslU | VF |
| PLAV_RS06310 () | 1375508..1376557 | - | 1050 | WP_143710293.1 | putative urea ABC transporter substrate-binding protein | - |
| PLAV_RS06315 () | 1376663..1377721 | - | 1059 | WP_012110130.1 | isopenicillin N synthase family oxygenase | - |
| PLAV_RS06320 () | 1377718..1378551 | - | 834 | WP_012110131.1 | hypothetical protein | - |
| PLAV_RS06325 () | 1378640..1379590 | - | 951 | WP_012110132.1 | LysR family transcriptional regulator | - |
| PLAV_RS06330 () | 1379785..1380168 | - | 384 | WP_012110133.1 | helix-turn-helix domain-containing protein | - |
| PLAV_RS06335 () | 1380165..1380806 | - | 642 | WP_012110134.1 | Smr/MutS family protein | - |
| PLAV_RS06340 () | 1380838..1381902 | - | 1065 | WP_012110135.1 | murein transglycosylase A | - |
| PLAV_RS06345 () | 1381990..1382721 | - | 732 | WP_202944027.1 | Tim44/TimA family putative adaptor protein | - |
| PLAV_RS06350 () | 1383009..1383518 | + | 510 | WP_049767728.1 | FxsA family protein | - |
| PLAV_RS06355 () | 1383608..1384114 | + | 507 | WP_012110138.1 | protein-export chaperone SecB | - |
| PLAV_RS06360 () | 1384119..1384805 | - | 687 | WP_012110139.1 | DNA polymerase III subunit epsilon | - |
| PLAV_RS06365 () | 1384822..1385250 | - | 429 | WP_012110140.1 | VOC family protein | - |
| PLAV_RS06370 () | 1385268..1385894 | - | 627 | WP_012110141.1 | dephospho-CoA kinase | - |
| PLAV_RS06375 () | 1385906..1386742 | - | 837 | WP_012110142.1 | shikimate dehydrogenase | - |
| PLAV_RS06380 () | 1386739..1387347 | - | 609 | WP_041536421.1 | septum formation protein Maf | - |
| PLAV_RS06385 () | 1387355..1388179 | - | 825 | WP_012110145.1 | kinase/pyrophosphorylase | - |
| PLAV_RS06390 () | 1388762..1389817 | + | 1056 | WP_041535879.1 | uroporphyrinogen decarboxylase | - |
| PLAV_RS06395 () | 1389814..1390851 | + | 1038 | WP_143710178.1 | ferrochelatase | - |
| PLAV_RS06400 () | 1390870..1391316 | + | 447 | WP_012110150.1 | protoporphyrinogen oxidase HemJ | - |
| PLAV_RS06405 () | 1391664..1392932 | + | 1269 | WP_012110151.1 | transcription termination factor Rho | - |
| PLAV_RS06410 () | 1393032..1393703 | + | 672 | WP_012110152.1 | PAS domain-containing protein | - |
| PLAV_RS06415 () | 1393778..1394737 | - | 960 | WP_012110153.1 | alpha/beta fold hydrolase | - |
| PLAV_RS18790 () | 1394734..1395150 | - | 417 | WP_012110154.1 | GFA family protein | - |
| PLAV_RS06425 () | 1395147..1396130 | - | 984 | WP_012110155.1 | Quinone oxidoreductase 1 | VF |
| PLAV_RS06430 () | 1396149..1396775 | - | 627 | WP_012110156.1 | LysE family translocator | - |
| PLAV_RS06435 () | 1396989..1397684 | - | 696 | WP_012110157.1 | dienelactone hydrolase family protein | - |
| PLAV_RS19620 () | 1397823..1397993 | - | 171 | WP_012110158.1 | hypothetical protein | - |
| PLAV_RS06440 () | 1398181..1399134 | + | 954 | WP_012110159.1 | transcriptional regulator GcvA | - |
| PLAV_RS06445 () | 1399171..1399764 | + | 594 | WP_012110160.1 | GNAT family N-acetyltransferase | - |
| PLAV_RS06450 () | 1399771..1401801 | - | 2031 | WP_012110161.1 | thioredoxin domain-containing protein | - |
| PLAV_RS06455 () | 1401902..1402186 | + | 285 | WP_012110162.1 | hypothetical protein | - |
| PLAV_RS06460 () | 1402213..1403529 | + | 1317 | WP_012110163.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| PLAV_RS06465 () | 1403654..1404682 | - | 1029 | WP_012110165.1 | IS1595-like element ISPla1 family transposase | - |
| PLAV_RS06470 () | 1404879..1406735 | + | 1857 | WP_012110166.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|