MGE detailed information
MGE type: Conjugative plasmid MGE length: 58679 bp
Accession: NC_009704 Location: 1..58679 Organism: Yersinia pseudotuberculosis IP 31758 Replicon: plasmid plasmid_59kb
Accession: NC_009704 Location: 1..58679 Organism: Yersinia pseudotuberculosis IP 31758 Replicon: plasmid plasmid_59kb
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YPSIP31758_RS00005 () | 519..1376 | - | 858 | WP_147654424.1 | Replication protein | - |
| YPSIP31758_RS00010 () | 1836..2138 | - | 303 | WP_011988449.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YPSIP31758_RS00015 () | 2126..2416 | - | 291 | WP_011988472.1 | CopG family transcriptional regulator | Antitoxin Detail |
| YPSIP31758_RS24175 () | 3122..3289 | - | 168 | WP_166485334.1 | hypothetical protein | - |
| YPSIP31758_RS00020 () | 3354..3548 | - | 195 | WP_041175615.1 | hypothetical protein | - |
| YPSIP31758_RS22360 () | 3928..4839 | - | 912 | WP_011988417.1 | zeta toxin family protein | - |
| YPSIP31758_RS00030 () | 4836..5057 | - | 222 | WP_041175616.1 | hypothetical protein | - |
| YPSIP31758_RS00035 () | 5634..6002 | + | 369 | WP_011988477.1 | hypothetical protein | VF |
| YPSIP31758_RS00040 () | 6161..7120 | + | 960 | WP_041175630.1 | hypothetical protein | VF |
| YPSIP31758_RS00045 () | 7133..7513 | + | 381 | WP_011988438.1 | TrbC/VirB2 family protein | - |
| YPSIP31758_RS00050 () | 7516..7830 | + | 315 | WP_011988450.1 | conjugal transfer protein TrbD | - |
| YPSIP31758_RS00055 () | 7823..10360 | + | 2538 | WP_011988420.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| YPSIP31758_RS00060 () | 10357..11079 | + | 723 | WP_011988424.1 | conjugal transfer protein TrbF | - |
| YPSIP31758_RS00065 () | 11094..11981 | + | 888 | WP_011988419.1 | P-type conjugative transfer protein TrbG | - |
| YPSIP31758_RS00070 () | 11984..12433 | + | 450 | WP_011988468.1 | conjugal transfer protein TrbH | - |
| YPSIP31758_RS00075 () | 12438..13817 | + | 1380 | WP_011988463.1 | hypothetical protein | VF |
| YPSIP31758_RS00080 () | 13835..14611 | + | 777 | WP_011988458.1 | P-type conjugative transfer protein TrbJ | - |
| YPSIP31758_RS00085 () | 14626..14826 | + | 201 | WP_041175617.1 | entry exclusion lipoprotein TrbK | - |
| YPSIP31758_RS00090 () | 14831..16195 | + | 1365 | WP_041175618.1 | P-type conjugative transfer protein TrbL | - |
| YPSIP31758_RS00095 () | 16248..16868 | + | 621 | WP_011988436.1 | conjugal transfer protein TrbN | - |
| YPSIP31758_RS22365 () | 16987..17466 | + | 480 | WP_011988473.1 | transcriptional activator | - |
| YPSIP31758_RS00105 () | 17489..18421 | + | 933 | WP_011988422.1 | hypothetical protein | VF |
| YPSIP31758_RS00110 () | 18434..20140 | + | 1707 | WP_011988414.1 | hypothetical protein | VF |
| YPSIP31758_RS00115 () | 20150..21484 | + | 1335 | WP_011988426.1 | type 4b pilus protein PilO2 | - |
| YPSIP31758_RS00120 () | 21471..21914 | + | 444 | WP_011988448.1 | type IV pilus biogenesis protein PilP | - |
| YPSIP31758_RS00125 () | 21911..23443 | + | 1533 | WP_011988476.1 | hypothetical protein | VF |
| YPSIP31758_RS00130 () | 23436..24500 | + | 1065 | WP_011988432.1 | type II secretion system F family protein | - |
| YPSIP31758_RS00135 () | 24517..25023 | + | 507 | WP_011988430.1 | type IV secretion system protein PilS2 | - |
| YPSIP31758_RS00140 () | 25039..25992 | + | 954 | WP_011988446.1 | Flp pilus assembly complex ATPase component TadA | - |
| YPSIP31758_RS00145 () | 26005..27261 | + | 1257 | WP_011988423.1 | hypothetical protein | VF |
| YPSIP31758_RS00150 () | 27495..27896 | + | 402 | WP_011988421.1 | hypothetical protein | - |
| YPSIP31758_RS00155 () | 27901..28332 | + | 432 | WP_011988469.1 | type IV pilus biogenesis protein PilM | - |
| YPSIP31758_RS00160 () | 28344..28967 | + | 624 | WP_011988455.1 | hypothetical protein | - |
| YPSIP31758_RS00165 () | 28986..29492 | + | 507 | WP_011988434.1 | hypothetical protein | VF |
| YPSIP31758_RS00170 () | 29517..30002 | + | 486 | WP_011988460.1 | hypothetical protein | - |
| YPSIP31758_RS00175 () | 30036..30335 | + | 300 | WP_011988453.1 | hypothetical protein | - |
| YPSIP31758_RS00180 () | 30468..30716 | + | 249 | WP_011988456.1 | hypothetical protein | - |
| YPSIP31758_RS00185 () | 30797..31144 | + | 348 | WP_011988418.1 | single-stranded DNA-binding protein | - |
| YPSIP31758_RS00190 () | 31794..31994 | - | 201 | WP_041175619.1 | entry exclusion lipoprotein TrbK | - |
| YPSIP31758_RS00195 () | 32134..32799 | - | 666 | WP_011988445.1 | hypothetical protein | - |
| YPSIP31758_RS24180 () | 32812..32982 | - | 171 | WP_011988452.1 | hypothetical protein | - |
| YPSIP31758_RS00205 () | 33378..33923 | + | 546 | WP_011988474.1 | hypothetical protein | - |
| YPSIP31758_RS00210 () | 34388..34684 | + | 297 | WP_041175621.1 | hypothetical protein | - |
| YPSIP31758_RS00215 () | 34854..35048 | + | 195 | WP_041175622.1 | hypothetical protein | - |
| YPSIP31758_RS00220 () | 35038..35337 | + | 300 | WP_011988416.1 | hypothetical protein | - |
| YPSIP31758_RS00225 () | 35407..35859 | + | 453 | WP_041175623.1 | hypothetical protein | - |
| YPSIP31758_RS00230 () | 36026..36532 | - | 507 | WP_147654426.1 | CPBP family intramembrane metalloprotease | - |
| YPSIP31758_RS00235 () | 36756..37538 | - | 783 | WP_011988454.1 | hypothetical protein | - |
| YPSIP31758_RS00240 () | 37549..38232 | - | 684 | WP_041175624.1 | hypothetical protein | - |
| YPSIP31758_RS00245 () | 38600..39370 | + | 771 | WP_049756368.1 | tyrosine-type recombinase/integrase | - |
| YPSIP31758_RS00250 () | 39675..42635 | - | 2961 | WP_011988431.1 | DUF1738 domain-containing protein | - |
| YPSIP31758_RS00255 () | 42628..42861 | - | 234 | WP_011988433.1 | hypothetical protein | - |
| YPSIP31758_RS00260 () | 42867..44906 | - | 2040 | WP_011988435.1 | DNA topoisomerase 3 | - |
| YPSIP31758_RS00265 () | 44942..45466 | - | 525 | WP_011988471.1 | conjugative transfer signal peptidase TraF | - |
| YPSIP31758_RS00270 () | 45463..47400 | - | 1938 | WP_011988415.1 | Conjugal transfer protein TraG | VF |
| YPSIP31758_RS00275 () | 47397..50018 | - | 2622 | WP_011988462.1 | hypothetical protein | Relaxase |
| YPSIP31758_RS00280 () | 50056..50412 | - | 357 | WP_011988427.1 | conjugal transfer transcriptional regulator TraJ | - |
| YPSIP31758_RS00285 () | 50746..51123 | + | 378 | WP_011988429.1 | TraK family protein | - |
| YPSIP31758_RS00290 () | 51135..51863 | + | 729 | WP_011988444.1 | conjugal transfer protein TraL | - |
| YPSIP31758_RS00295 () | 51860..52300 | + | 441 | WP_011988443.1 | conjugal transfer protein TraM | - |
| YPSIP31758_RS00300 () | 52464..53075 | - | 612 | WP_049756369.1 | hypothetical protein | - |
| YPSIP31758_RS00305 () | 53106..53456 | - | 351 | WP_041175625.1 | hypothetical protein | - |
| YPSIP31758_RS00310 () | 54303..54728 | + | 426 | WP_041175626.1 | hypothetical protein | - |
| YPSIP31758_RS00315 () | 54761..55000 | + | 240 | WP_011988467.1 | helix-turn-helix domain-containing protein | - |
| YPSIP31758_RS00320 () | 55088..55408 | - | 321 | WP_011988470.1 | hypothetical protein | - |
| YPSIP31758_RS00325 () | 55522..56574 | - | 1053 | WP_011988428.1 | ParB/RepB/Spo0J family partition protein | - |
| YPSIP31758_RS00330 () | 56571..57341 | - | 771 | WP_041175627.1 | ParA family protein | - |
| YPSIP31758_RS00335 () | 57338..57643 | - | 306 | WP_041175628.1 | transcriptional regulator | - |
| YPSIP31758_RS00340 () | 57838..58155 | - | 318 | WP_011988475.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|