MGE detailed information
MGE type: Mobilizable plasmid MGE length: 219313 bp
Accession: NC_009622 Location: 1..219313 Organism: Sinorhizobium medicae WSM419 Replicon: plasmid pSMED03
Accession: NC_009622 Location: 1..219313 Organism: Sinorhizobium medicae WSM419 Replicon: plasmid pSMED03
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMED_RS31065 () | 297..965 | + | 669 | WP_011971145.1 | hypothetical protein | - |
| SMED_RS31070 () | 1637..2701 | + | 1065 | WP_011971143.1 | glycoside hydrolase | - |
| SMED_RS31075 () | 2698..3741 | + | 1044 | WP_011971142.1 | hypothetical protein | - |
| SMED_RS31080 () | 4381..5304 | + | 924 | WP_011971140.1 | homocysteine S-methyltransferase family protein | - |
| SMED_RS31085 () | 5419..5683 | - | 265 | Protein_4 | Hsp20/alpha crystallin family protein | - |
| SMED_RS31090 () | 5731..6006 | - | 276 | WP_208870268.1 | hypothetical protein | - |
| SMED_RS31095 () | 6172..6639 | + | 468 | WP_011971139.1 | IS66 family transposase ISRm2 | Transposase |
| SMED_RS31100 () | 6620..6973 | + | 354 | WP_011971138.1 | IS66 family transposase ISRm2 | Transposase |
| SMED_RS31105 () | 7027..8619 | + | 1593 | WP_011971137.1 | IS66 family transposase ISRm2 | Transposase |
| SMED_RS31110 () | 8690..11442 | - | 2753 | Protein_9 | hypothetical protein | VF |
| SMED_RS31115 () | 11660..11971 | + | 312 | Protein_10 | DUF982 domain-containing protein | - |
| SMED_RS31120 () | 12172..12594 | - | 423 | Protein_11 | reverse transcriptase | - |
| SMED_RS31125 () | 13207..13689 | - | 483 | Protein_12 | IS256 family transposase ISMtsp13 | Transposase |
| SMED_RS31130 () | 14195..14617 | + | 423 | WP_011971131.1 | low affinity iron permease family protein | - |
| SMED_RS31135 () | 15134..15307 | + | 174 | WP_011971130.1 | DUF3606 domain-containing protein | - |
| SMED_RS31140 () | 15715..16176 | - | 462 | WP_011971129.1 | hypothetical protein | VF |
| SMED_RS31145 () | 16538..17029 | - | 492 | WP_011971128.1 | DUF4142 domain-containing protein | - |
| SMED_RS31150 () | 17385..19199 | + | 1815 | WP_011971127.1 | methanol/ethanol family PQQ-dependent dehydrogenase | - |
| SMED_RS31155 () | 19180..20001 | + | 822 | WP_011971126.1 | substrate-binding domain-containing protein | - |
| SMED_RS31160 () | 19998..20555 | + | 558 | WP_011971125.1 | c-type cytochrome | - |
| SMED_RS31165 () | 20563..21567 | + | 1005 | WP_011971124.1 | cytochrome c oxidase subunit II | - |
| SMED_RS31170 () | 21564..23471 | + | 1908 | WP_011971123.1 | cytochrome c oxidase subunit I | - |
| SMED_RS31175 () | 23472..24068 | + | 597 | WP_011971122.1 | cytochrome c oxidase subunit 3 | - |
| SMED_RS31180 () | 24065..24415 | + | 351 | WP_011971121.1 | hypothetical protein | - |
| SMED_RS31185 () | 24412..25370 | + | 959 | Protein_24 | cytochrome c oxidase assembly protein | - |
| SMED_RS31190 () | 25671..26976 | - | 1306 | Protein_25 | ISNCY family transposase | - |
| SMED_RS31195 () | 28025..28588 | - | 564 | WP_011970372.1 | IS66 family transposase ISSme3 | Transposase |
| SMED_RS31200 () | 28585..30159 | - | 1575 | WP_011971117.1 | IS66 family transposase ISSme3 | Transposase |
| SMED_RS31205 () | 30208..30564 | - | 357 | WP_011970376.1 | IS66 family transposase ISSme3 | Transposase |
| SMED_RS31210 () | 30561..31043 | - | 483 | WP_011971116.1 | IS66 family transposase ISSme3 | Transposase |
| SMED_RS31215 () | 31072..31496 | - | 425 | Protein_30 | helix-turn-helix transcriptional regulator | - |
| SMED_RS31220 () | 31807..32163 | - | 357 | WP_164923159.1 | hypothetical protein | - |
| SMED_RS31225 () | 32284..33642 | + | 1359 | WP_164830043.1 | lipopolysaccharide biosynthesis protein | - |
| SMED_RS31230 () | 33890..35791 | - | 1902 | WP_011971114.1 | potassium transporter Kup | - |
| SMED_RS31235 () | 36540..36953 | - | 414 | WP_011971113.1 | MucR family transcriptional regulator | - |
| SMED_RS31240 () | 37195..37808 | + | 614 | Protein_35 | hypothetical protein | - |
| SMED_RS31245 () | 38080..38535 | + | 456 | Protein_36 | transposase | - |
| SMED_RS31250 () | 38796..39398 | + | 603 | Protein_37 | hypothetical protein | - |
| SMED_RS31255 () | 39464..39784 | - | 321 | WP_011971111.1 | helix-turn-helix domain-containing protein | - |
| SMED_RS31260 () | 40153..40425 | + | 273 | WP_164923161.1 | hypothetical protein | - |
| SMED_RS31265 () | 40553..40775 | - | 223 | Protein_40 | WGR domain-containing protein | - |
| SMED_RS31270 () | 41074..41550 | - | 477 | WP_029722770.1 | helix-turn-helix domain-containing protein | - |
| SMED_RS31275 () | 42192..42389 | - | 198 | WP_164923166.1 | hypothetical protein | - |
| SMED_RS31280 () | 42622..43335 | - | 714 | WP_011971107.1 | ParA family protein | - |
| SMED_RS31285 () | 44025..44426 | + | 402 | WP_011971106.1 | hypothetical protein | Relaxase |
| SMED_RS31290 () | 44430..46922 | + | 2493 | WP_011971105.1 | hypothetical protein | - |
| SMED_RS31295 () | 46929..47138 | + | 210 | WP_011971104.1 | hypothetical protein | - |
| SMED_RS31300 () | 47238..47681 | + | 444 | WP_011971103.1 | ester cyclase | - |
| SMED_RS31305 () | 48021..48722 | - | 702 | WP_164923162.1 | hypothetical protein | - |
| SMED_RS31310 () | 48693..49623 | + | 931 | Protein_49 | MBL fold metallo-hydrolase | - |
| SMED_RS31315 () | 49681..49978 | + | 298 | Protein_50 | DUF982 domain-containing protein | - |
| SMED_RS31320 () | 50156..50413 | + | 258 | Protein_51 | DUF4142 domain-containing protein | - |
| SMED_RS31325 () | 50422..51120 | + | 699 | Protein_52 | cyanophycinase | - |
| SMED_RS31330 () | 51262..52086 | + | 825 | WP_011971101.1 | manganese catalase family protein | - |
| SMED_RS31335 () | 52382..53320 | + | 939 | Protein_54 | alpha/beta hydrolase fold domain-containing protein | - |
| SMED_RS31340 () | 53418..53708 | - | 291 | WP_164923160.1 | hypothetical protein | - |
| SMED_RS31345 () | 53870..55345 | - | 1476 | WP_011971098.1 | DUF1214 domain-containing protein | - |
| SMED_RS31350 () | 55622..56576 | + | 955 | Protein_57 | LysR family transcriptional regulator | - |
| SMED_RS31355 () | 56661..58760 | - | 2100 | WP_011971097.1 | type IV secretory system conjugative DNA transfer family protein | - |
| SMED_RS31360 () | 58757..59785 | - | 1029 | WP_011971096.1 | Type IV secretion system protein VirB11 | VF |
| SMED_RS31365 () | 59766..60977 | - | 1212 | WP_011971095.1 | Type IV secretion system protein virB10 | VF |
| SMED_RS31370 () | 60977..61786 | - | 810 | WP_011971094.1 | Type IV secretion system protein virB9 | VF |
| SMED_RS31375 () | 61783..62478 | - | 696 | WP_011971093.1 | Type IV secretion system protein virB8 | VF |
| SMED_RS31380 () | 62504..63532 | - | 1029 | WP_011971092.1 | type IV secretion system protein | - |
| SMED_RS31385 () | 63548..63775 | - | 228 | WP_011971091.1 | hypothetical protein | - |
| SMED_RS31390 () | 63765..64466 | - | 702 | WP_011971090.1 | conjugal transfer protein | - |
| SMED_RS31395 () | 64478..65566 | - | 1089 | WP_011971089.1 | lytic transglycosylase domain-containing protein | - |
| SMED_RS31400 () | 65563..68022 | - | 2460 | WP_011971088.1 | Type IV secretion system protein virB4 | VF |
| SMED_RS31405 () | 68025..68324 | - | 300 | WP_011971087.1 | hypothetical protein | VF |
| SMED_RS31410 () | 68328..68666 | - | 339 | WP_011971086.1 | hypothetical protein | VF |
| SMED_RS31415 () | 68678..69589 | - | 912 | WP_024312403.1 | lytic transglycosylase domain-containing protein | - |
| SMED_RS31420 () | 69812..70420 | + | 609 | WP_011971084.1 | hypothetical protein | - |
| SMED_RS31425 () | 70417..70953 | + | 537 | WP_011971083.1 | succinoglycan biosynthesis protein exoi | - |
| SMED_RS31430 () | 70950..71651 | + | 702 | WP_011971082.1 | thermonuclease family protein | - |
| SMED_RS31435 () | 71652..72050 | + | 399 | WP_011971081.1 | hypothetical protein | - |
| SMED_RS31440 () | 72052..72648 | + | 597 | WP_011971080.1 | hypothetical protein | - |
| SMED_RS31445 () | 72669..73085 | + | 417 | WP_011971079.1 | hypothetical protein | - |
| SMED_RS31450 () | 73168..73503 | - | 336 | WP_024312400.1 | hypothetical protein | - |
| SMED_RS31455 () | 74230..75240 | - | 1011 | WP_011971076.1 | alpha/beta hydrolase | - |
| SMED_RS31460 () | 75230..76843 | - | 1614 | WP_011971075.1 | membrane protein | - |
| SMED_RS31465 () | 77107..77409 | + | 303 | WP_164923167.1 | hypothetical protein | - |
| SMED_RS31470 () | 77571..78572 | - | 1002 | WP_011971073.1 | IS30 family transposase ISRle2 | Transposase |
| SMED_RS31475 () | 78912..79649 | + | 738 | WP_011971072.1 | hypothetical protein | - |
| SMED_RS31480 () | 79636..81045 | - | 1410 | WP_011971071.1 | ISNCY family transposase ISRel26 | Transposase |
| SMED_RS31485 () | 81837..81979 | + | 143 | Protein_84 | IS5/IS1182 family transposase | - |
| SMED_RS31490 () | 81990..82109 | - | 120 | Protein_85 | transposase | - |
| SMED_RS31495 () | 82106..82647 | + | 542 | Protein_86 | DUF3800 domain-containing protein | - |
| SMED_RS31500 () | 82842..83037 | + | 196 | Protein_87 | IS91 family transposase ISAzo26 | Transposase |
| SMED_RS31505 () | 83690..84022 | - | 333 | WP_011971069.1 | hypothetical protein | - |
| SMED_RS31510 () | 84145..85755 | - | 1611 | WP_011971068.1 | tyrosinase family protein | - |
| SMED_RS31515 () | 85819..86211 | - | 393 | WP_011971067.1 | hypothetical protein | - |
| SMED_RS31520 () | 86239..88188 | - | 1950 | WP_011971066.1 | multicopper oxidase domain-containing protein | - |
| SMED_RS31525 () | 88562..88846 | - | 285 | Protein_92 | IS5 family transposase ISRm33 | Transposase |
| SMED_RS31530 () | 88944..89099 | - | 156 | WP_164830353.1 | hypothetical protein | - |
| SMED_RS31535 () | 89161..89890 | + | 730 | Protein_94 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| SMED_RS31540 () | 90049..90186 | + | 138 | Protein_95 | IS5/IS1182 family transposase | - |
| SMED_RS31545 () | 90277..90929 | + | 653 | Protein_96 | IS5 family transposase ISHph1 | Transposase |
| SMED_RS31550 () | 91437..92630 | + | 1194 | WP_011971065.1 | amino acid ABC transporter permease | - |
| SMED_RS31555 () | 92635..93789 | + | 1155 | WP_011971064.1 | amino acid ABC transporter permease | - |
| SMED_RS31560 () | 93806..94582 | + | 777 | WP_011971063.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| SMED_RS31565 () | 94701..94916 | + | 216 | Protein_100 | IS91 family transposase ISAzo26 | Transposase |
| SMED_RS31570 () | 95960..96244 | + | 285 | WP_011971061.1 | hypothetical protein | - |
| SMED_RS31575 () | 96364..96504 | + | 141 | WP_011971060.1 | hypothetical protein | - |
| SMED_RS31580 () | 96912..98021 | + | 1110 | WP_011971059.1 | ionic transporter y4hA | - |
| SMED_RS31585 () | 98085..98309 | - | 225 | WP_011971058.1 | IS66 family transposase ISSme3 | Transposase |
| SMED_RS31590 () | 98378..98635 | - | 258 | WP_086017937.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| SMED_RS31595 () | 98635..98895 | - | 261 | WP_017266772.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| SMED_RS31600 () | 99270..100026 | - | 757 | Protein_107 | IS5 family transposase ISPbe2 | Transposase |
| SMED_RS31605 () | 100152..101174 | + | 1023 | WP_011971054.1 | IS110 family transposase ISCc4 | Transposase |
| SMED_RS31610 () | 101590..102603 | + | 1014 | Protein_109 | IS630 family transposase ISBj5 | Transposase |
| SMED_RS31615 () | 102612..102989 | - | 378 | Protein_110 | IS256 family transposase ISRm3 | Transposase |
| SMED_RS31620 () | 103050..103734 | - | 685 | Protein_111 | transposase | - |
| SMED_RS31625 () | 103878..104897 | - | 1020 | WP_011971052.1 | 1-aminocyclopropane-1-carboxylate deaminase | - |
| SMED_RS31630 () | 105041..105517 | + | 477 | WP_011971051.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| SMED_RS31640 () | 105781..106290 | - | 510 | Protein_114 | thiazole synthase | - |
| SMED_RS31645 () | 106274..106837 | + | 564 | WP_162142262.1 | transposase | - |
| SMED_RS31650 () | 106898..108136 | + | 1239 | WP_011971049.1 | IS91 family transposase ISShvi3 | Transposase |
| SMED_RS31655 () | 108133..109065 | + | 933 | WP_011971048.1 | tyrosine-type recombinase/integrase | - |
| SMED_RS31660 () | 109062..110059 | + | 998 | Protein_118 | site-specific integrase | - |
| SMED_RS31665 () | 110145..110234 | - | 90 | Protein_119 | IS66 family insertion sequence element accessory protein TnpB | - |
| SMED_RS31670 () | 110521..111258 | - | 738 | WP_011971047.1 | IS21 family transposase ISRel16 | Transposase |
| SMED_RS31675 () | 111271..112787 | - | 1517 | Protein_121 | IS21 family transposase ISRel16 | Transposase |
| SMED_RS31680 () | 113022..113289 | - | 268 | Protein_122 | IS5 family transposase ISRhru5 | Transposase |
| SMED_RS31685 () | 113402..114145 | - | 744 | WP_011971046.1 | hypothetical protein | VF |
| SMED_RS31690 () | 114142..114942 | - | 801 | WP_011971045.1 | SagB/ThcOx family dehydrogenase | - |
| SMED_RS31695 () | 115207..115866 | - | 660 | WP_018210817.1 | hypothetical protein | - |
| SMED_RS31700 () | 116148..116549 | - | 402 | WP_024312552.1 | ParB N-terminal domain-containing protein | - |
| SMED_RS31705 () | 116722..118257 | - | 1536 | WP_011971043.1 | hypothetical protein | - |
| SMED_RS31710 () | 118254..144998 | - | 26745 | WP_011971042.1 | D-alanine--D-alanyl carrier protein ligase | VF |
| SMED_RS31715 () | 145079..154597 | - | 9519 | Protein_129 | D-alanine--D-alanyl carrier protein ligase | VF |
| SMED_RS31720 () | 155453..156526 | - | 1074 | Protein_130 | D-alanine--D-alanyl carrier protein ligase | VF |
| SMED_RS32465 () | 156617..158080 | - | 1464 | Protein_131 | D-alanine--D-alanyl carrier protein ligase | VF |
| SMED_RS31730 () | 161381..171223 | - | 9843 | Protein_132 | D-alanine--D-alanyl carrier protein ligase | VF |
| SMED_RS31740 () | 172148..173047 | + | 900 | WP_011971039.1 | LysR family transcriptional regulator | - |
| SMED_RS31745 () | 173585..173983 | - | 399 | WP_011971038.1 | cytochrome P450 | - |
| SMED_RS31750 () | 174125..175213 | + | 1089 | WP_011970739.1 | IS630 family transposase ISBj5 | Transposase |
| SMED_RS31760 () | 176518..176787 | + | 270 | Protein_137 | group II intron reverse transcriptase/maturase | - |
| SMED_RS31765 () | 176745..176987 | + | 243 | WP_018009473.1 | DUF736 family protein | - |
| SMED_RS31770 () | 177124..177267 | - | 144 | Protein_139 | IS5/IS1182 family transposase | - |
| SMED_RS31775 () | 177515..177781 | + | 267 | WP_011971036.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| SMED_RS31780 () | 177778..178074 | + | 297 | WP_011971035.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| SMED_RS31785 () | 178455..178583 | - | 129 | Protein_142 | IS6 family transposase ISRle7 | Transposase |
| SMED_RS31790 () | 178647..178952 | - | 306 | WP_011971014.1 | hypothetical protein | - |
| SMED_RS31795 () | 178952..180515 | - | 1564 | Protein_144 | IS66 family transposase ISAtu6 | Transposase |
| SMED_RS31800 () | 180587..180934 | - | 348 | WP_011971016.1 | IS66 family transposase ISAtu6 | Transposase |
| SMED_RS31805 () | 180931..181314 | - | 384 | WP_011971017.1 | IS66 family transposase ISRel19 | Transposase |
| SMED_RS31810 () | 181476..181895 | - | 420 | Protein_147 | hypothetical protein | VF |
| SMED_RS31815 () | 182259..183473 | + | 1215 | WP_011971032.1 | hypothetical protein | VF |
| SMED_RS31820 () | 183470..184492 | + | 1023 | WP_011971031.1 | plasmid partitioning protein RepB | - |
| SMED_RS31825 () | 184647..185861 | + | 1215 | WP_011971030.1 | replication initiation protein RepC | - |
| SMED_RS31830 () | 186691..187284 | - | 594 | Protein_151 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| SMED_RS31835 () | 187369..187638 | - | 270 | WP_024312593.1 | hypothetical protein | - |
| SMED_RS31840 () | 187786..188049 | + | 264 | WP_011971028.1 | hypothetical protein | - |
| SMED_RS31845 () | 188046..189214 | - | 1169 | Protein_154 | site-specific integrase | - |
| SMED_RS31850 () | 189285..189563 | + | 279 | WP_011971026.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| SMED_RS31855 () | 189762..190181 | - | 420 | WP_011971025.1 | type II toxin-antitoxin system VapC family toxin | - |
| SMED_RS31860 () | 190178..190420 | - | 243 | WP_024312560.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| SMED_RS31865 () | 190774..191226 | + | 453 | WP_164923163.1 | DUF1612 domain-containing protein | - |
| SMED_RS31870 () | 191238..191378 | + | 141 | WP_164923164.1 | hypothetical protein | - |
| SMED_RS31875 () | 191398..192570 | + | 1173 | Protein_160 | restriction endonuclease | - |
| SMED_RS31880 () | 193025..194950 | + | 1926 | WP_011971023.1 | toll/interleukin-1 receptor domain-containing protein | - |
| SMED_RS31885 () | 194947..196500 | + | 1554 | WP_011971022.1 | hypothetical protein | - |
| SMED_RS31890 () | 196491..196787 | - | 297 | WP_011971021.1 | hypothetical protein | - |
| SMED_RS31900 () | 198161..201754 | + | 3594 | WP_011971019.1 | SIR2 family protein | - |
| SMED_RS31905 () | 201862..202509 | - | 648 | Protein_166 | hypothetical protein | - |
| SMED_RS31910 () | 202588..202931 | + | 344 | Protein_167 | IS3 family transposase IS426 | Transposase |
| SMED_RS31915 () | 203023..203406 | + | 384 | WP_011971017.1 | IS66 family transposase ISRel19 | Transposase |
| SMED_RS31920 () | 203403..203750 | + | 348 | WP_011971016.1 | IS66 family transposase ISAtu6 | Transposase |
| SMED_RS31925 () | 203821..205386 | + | 1566 | WP_011971015.1 | IS66 family transposase ISAtu6 | Transposase |
| SMED_RS31930 () | 205386..205691 | + | 306 | WP_011971014.1 | hypothetical protein | - |
| SMED_RS31935 () | 205740..206417 | + | 678 | Protein_172 | IS3 family transposase IS426 | Transposase |
| SMED_RS31940 () | 206420..206803 | - | 384 | Protein_173 | IS3 family transposase IS426 | Transposase |
| SMED_RS31945 () | 206965..207241 | + | 277 | Protein_174 | transposase | - |
| SMED_RS31950 () | 207573..208307 | - | 735 | WP_011971012.1 | IS21 family transposase ISPkr1 | Transposase |
| SMED_RS31955 () | 208309..209808 | - | 1500 | WP_011971011.1 | IS21 family transposase ISMdi27 | Transposase |
| SMED_RS31960 () | 209954..211174 | - | 1221 | WP_011971010.1 | response regulator | - |
| SMED_RS31965 () | 211179..211634 | - | 456 | WP_011971009.1 | response regulator | - |
| SMED_RS31970 () | 211609..214791 | - | 3183 | WP_164923165.1 | hypothetical protein | - |
| SMED_RS31975 () | 215640..216422 | + | 783 | WP_011971007.1 | lysozyme | - |
| SMED_RS31980 () | 216440..217360 | + | 921 | WP_011971006.1 | hypothetical protein | - |
| SMED_RS31985 () | 218038..219165 | - | 1128 | WP_011971005.1 | glycoside hydrolase family 25 protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|