MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 71507 bp
Accession: NC_009377 Location: 1..71507 Organism: Yersinia pestis Pestoides F Replicon: plasmid CD
Accession: NC_009377 Location: 1..71507 Organism: Yersinia pestis Pestoides F Replicon: plasmid CD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YPDSF_RS20865 () | 785..1033 | + | 249 | WP_002233137.1 | hypothetical protein | VF |
| YPDSF_RS20870 () | 1171..1425 | + | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| YPDSF_RS20875 () | 1667..1741 | + | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| YPDSF_RS20880 () | 1722..2600 | + | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| YPDSF_RS23385 () | 3773..4012 | + | 240 | WP_002213291.1 | hypothetical protein | - |
| YPDSF_RS23830 () | 4190..4502 | + | 313 | Protein_6 | IS3 family transposase ISKpn37 | Transposase |
| YPDSF_RS20890 () | 4758..5186 | + | 429 | WP_002233145.1 | hypothetical protein | VF |
| YPDSF_RS20895 () | 5204..7402 | + | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| YPDSF_RS20900 () | 7798..8664 | + | 867 | WP_002213287.1 | Effector protein YopJ | VF |
| YPDSF_RS20905 () | 9250..9828 | - | 579 | Protein_10 | IS3 family transposase ISYpe1 | Transposase |
| YPDSF_RS20910 () | 9831..10064 | + | 234 | Protein_11 | transposase domain-containing protein | - |
| YPDSF_RS20915 () | 10347..11753 | + | 1407 | WP_011901819.1 | Tyrosine-protein phosphatase YopH | VF |
| YPDSF_RS23400 () | 11974..12246 | - | 273 | Protein_13 | transposase | - |
| YPDSF_RS20920 () | 12265..12402 | - | 138 | Protein_14 | transposase | - |
| YPDSF_RS20925 () | 12468..13250 | - | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| YPDSF_RS20930 () | 13247..14269 | - | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| YPDSF_RS24245 () | 14393..15254 | - | 862 | Protein_17 | IS3 family transposase | - |
| YPDSF_RS20950 () | 15802..16149 | - | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| YPDSF_RS20955 () | 16374..17039 | - | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| YPDSF_RS20960 () | 16985..17614 | - | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| YPDSF_RS20965 () | 17614..18348 | - | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| YPDSF_RS20970 () | 18355..18702 | - | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| YPDSF_RS20975 () | 18703..19200 | - | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| YPDSF_RS20980 () | 19197..19544 | - | 348 | WP_011901822.1 | Putative Yop proteins translocation protein G | VF |
| YPDSF_RS20985 () | 19546..19809 | - | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| YPDSF_RS20990 () | 19810..20010 | - | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| YPDSF_RS20995 () | 20007..21266 | - | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| YPDSF_RS21000 () | 21263..23086 | - | 1824 | WP_002212923.1 | Type 3 secretion system secretin | VF |
| YPDSF_RS21005 () | 23092..23505 | - | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| YPDSF_RS21010 () | 23731..23829 | - | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| YPDSF_RS21015 () | 23908..24723 | - | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| YPDSF_RS21020 () | 24847..25242 | - | 396 | WP_002222527.1 | Type 3 secretion system pilotin | VF |
| YPDSF_RS21025 () | 25817..26881 | - | 1065 | WP_011901823.1 | Yop proteins translocation protein U | VF |
| YPDSF_RS21030 () | 26881..27666 | - | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| YPDSF_RS21035 () | 27663..27929 | - | 267 | WP_002212945.1 | Surface presentation of antigens protein SpaQ | VF |
| YPDSF_RS21040 () | 27931..28584 | - | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| YPDSF_RS21045 () | 28581..29504 | - | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| YPDSF_RS21050 () | 29501..30868 | - | 1368 | WP_011901824.1 | hypothetical protein | VF |
| YPDSF_RS21055 () | 30868..31332 | - | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| YPDSF_RS21060 () | 31329..32648 | - | 1320 | WP_011901825.1 | putative ATP synthase YscN | VF |
| YPDSF_RS21065 () | 32846..33727 | + | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| YPDSF_RS21070 () | 33708..33986 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| YPDSF_RS21075 () | 33973..34344 | + | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| YPDSF_RS21080 () | 34341..34709 | + | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| YPDSF_RS21085 () | 34706..35050 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| YPDSF_RS21090 () | 35037..37151 | + | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| YPDSF_RS21095 () | 37148..37588 | + | 441 | WP_002220918.1 | hypothetical protein | VF |
| YPDSF_RS21100 () | 37630..37917 | + | 288 | WP_002212973.1 | hypothetical protein | VF |
| YPDSF_RS21105 () | 37919..38893 | + | 975 | WP_011171995.1 | Virulence-associated V antigen | VF |
| YPDSF_RS21110 () | 38896..39402 | + | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| YPDSF_RS21115 () | 39380..40585 | + | 1206 | WP_002212985.1 | Protein YopB | VF |
| YPDSF_RS21120 () | 40604..41524 | + | 921 | WP_002212987.1 | Protein YopD | VF |
| YPDSF_RS21125 () | 42067..43275 | + | 1209 | WP_002209743.1 | IS256 family transposase ISEc39 | Transposase |
| YPDSF_RS23835 () | 43315..43952 | - | 638 | Protein_54 | IS6 family transposase | - |
| YPDSF_RS21135 () | 43973..44182 | + | 210 | WP_002229781.1 | hypothetical protein | - |
| YPDSF_RS21140 () | 44576..45805 | + | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| YPDSF_RS21145 () | 45848..46165 | - | 318 | Protein_57 | IS256 family transposase ISSod4 | Transposase |
| YPDSF_RS24255 () | 46047..46292 | - | 246 | WP_116442925.1 | transposase | - |
| YPDSF_RS23425 () | 46295..46513 | + | 219 | Protein_59 | IS6 family transposase | - |
| YPDSF_RS21150 () | 47041..47460 | - | 420 | WP_002222515.1 | hypothetical protein | - |
| YPDSF_RS23430 () | 47478..47759 | - | 282 | Protein_61 | DDE-type integrase/transposase/recombinase | - |
| YPDSF_RS21160 () | 48165..48563 | - | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| YPDSF_RS23435 () | 48563..49530 | - | 968 | Protein_63 | Cysteine protease YopT | VF |
| YPDSF_RS21170 () | 50030..50578 | + | 549 | WP_002213007.1 | hypothetical protein | VF |
| YPDSF_RS23840 () | 50737..51030 | + | 294 | Protein_65 | IS3 family transposase | - |
| YPDSF_RS21175 () | 51176..51805 | + | 630 | WP_002229770.1 | hypothetical protein | - |
| YPDSF_RS24265 () | 51912..53057 | + | 1146 | Protein_67 | IS3 family transposase | - |
| YPDSF_RS21195 () | 53817..54983 | + | 1167 | WP_002220902.1 | hypothetical protein | VF |
| YPDSF_RS21200 () | 54980..55945 | + | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| YPDSF_RS24540 () | 56400..56573 | - | 174 | WP_002213357.1 | hypothetical protein | - |
| YPDSF_RS23850 () | 56660..56952 | + | 293 | Protein_71 | IS6 family transposase ISEas1 | Transposase |
| YPDSF_RS21205 () | 57118..57360 | + | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| YPDSF_RS21210 () | 57353..57652 | + | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YPDSF_RS21215 () | 57792..58451 | - | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| YPDSF_RS21220 () | 58645..59037 | + | 393 | WP_002213403.1 | YopE regulator | VF |
| YPDSF_RS21225 () | 59100..59744 | - | 645 | Protein_76 | IS3 family transposase ISYen3 | Transposase |
| YPDSF_RS21235 () | 59847..61019 | + | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| YPDSF_RS21240 () | 61019..61417 | + | 399 | Protein_78 | IS21 family transposase IS21 | Transposase |
| YPDSF_RS21245 () | 61794..62219 | + | 426 | WP_002213267.1 | hypothetical protein | VF |
| YPDSF_RS21260 () | 63566..63895 | - | 330 | WP_002229829.1 | hypothetical protein | - |
| YPDSF_RS21265 () | 64034..64498 | - | 465 | WP_002224338.1 | hypothetical protein | - |
| YPDSF_RS21270 () | 64517..65068 | - | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YPDSF_RS21275 () | 65232..67547 | + | 2316 | WP_011901828.1 | Tn3 family transposase ISEc63 | Transposase |
| YPDSF_RS21280 () | 67580..67930 | - | 351 | Protein_85 | IS3 family transposase IS1351 | Transposase |
| YPDSF_RS23475 () | 68530..69833 | + | 1304 | Protein_86 | Adhesin YadA | VF |
| YPDSF_RS24545 () | 69903..70061 | + | 159 | Protein_87 | EamA family transporter | - |
| YPDSF_RS21300 () | 70159..70428 | - | 270 | WP_042469136.1 | transposase | - |
| YPDSF_RS21305 () | 70497..70955 | + | 459 | WP_002213246.1 | hypothetical protein | - |
| YPDSF_RS21310 () | 71127..71444 | + | 318 | WP_002213008.1 | IS3 family transposase ISKpn37 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|